Wall clock time and date at job start Tue Mar 31 2020 09:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00198 * 2 1 4 4 H 1.48509 * 109.46984 * 274.46406 * 3 2 1 5 5 H 1.48496 * 109.47258 * 34.46208 * 3 2 1 6 6 H 1.48497 * 109.47471 * 154.46461 * 3 2 1 7 7 C 1.37877 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99867 * 356.64121 * 7 2 1 9 9 C 1.50703 * 120.00157 * 176.64824 * 7 2 1 10 10 C 1.52999 * 115.54754 * 294.64653 * 9 7 2 11 11 N 1.46900 * 109.47103 * 301.65170 * 10 9 7 12 12 C 1.44182 * 111.00286 * 304.37520 * 11 10 9 13 13 C 1.54318 * 112.62048 * 217.52521 * 12 11 10 14 14 C 1.54318 * 111.72140 * 318.91557 * 13 12 11 15 15 N 1.44182 * 112.61379 * 318.92236 * 14 13 12 16 16 C 1.39170 * 110.99780 * 217.52553 * 15 14 13 17 17 C 1.39470 * 120.86593 * 274.94274 * 16 15 14 18 18 C 1.37899 * 119.06934 * 179.73500 * 17 16 15 19 19 N 1.32003 * 120.83476 * 0.55108 * 18 17 16 20 20 C 1.31990 * 121.91353 * 359.72042 * 19 18 17 21 21 C 1.37897 * 120.84228 * 0.02562 * 20 19 18 22 22 C 1.48084 * 109.89615 * 94.35476 * 15 14 13 23 23 C 1.46091 * 112.15707 * 279.63556 * 22 15 14 24 24 C 1.53001 * 117.49907 * 80.31672 * 9 7 2 25 25 C 1.53000 * 117.49984 * 148.97692 * 9 7 2 26 26 H 0.97004 * 120.00165 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.46804 * 181.65835 * 10 9 7 28 28 H 1.08992 * 109.47377 * 61.65340 * 10 9 7 29 29 H 1.09007 * 108.85065 * 96.71405 * 12 11 10 30 30 H 1.08996 * 108.85174 * 338.33776 * 12 11 10 31 31 H 1.09000 * 109.03140 * 198.33898 * 13 12 11 32 32 H 1.09000 * 108.96927 * 79.45354 * 13 12 11 33 33 H 1.09008 * 108.85433 * 198.11351 * 14 13 12 34 34 H 1.08997 * 108.85467 * 79.73228 * 14 13 12 35 35 H 1.08001 * 120.46628 * 359.97314 * 17 16 15 36 36 H 1.07997 * 119.58304 * 180.24798 * 18 17 16 37 37 H 1.08003 * 119.57700 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.46451 * 180.02562 * 21 20 19 39 39 H 1.08998 * 108.94321 * 158.94314 * 22 15 14 40 40 H 1.08996 * 108.94348 * 40.32090 * 22 15 14 41 41 H 1.08997 * 108.94209 * 181.37876 * 23 22 15 42 42 H 1.09005 * 108.94539 * 299.99973 * 23 22 15 43 43 H 1.09001 * 117.49386 * 215.00393 * 24 9 7 44 44 H 1.08994 * 117.49793 * 0.02562 * 24 9 7 45 45 H 1.08998 * 117.49996 * 359.97204 * 25 9 7 46 46 H 1.09001 * 117.50197 * 144.97682 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4023 2.1008 -1.3959 5 1 1.4970 2.6235 0.7922 6 1 3.5907 1.4147 0.6035 7 6 2.0045 -1.1941 -0.0005 8 1 1.4658 -2.1286 0.0538 9 6 3.5096 -1.1952 -0.0768 10 6 4.1046 -0.6564 -1.3793 11 7 3.6015 -1.4463 -2.5111 12 6 3.8781 -2.8491 -2.3257 13 6 4.2553 -3.5589 -3.6431 14 6 3.3723 -3.0889 -4.8182 15 7 1.9879 -2.9366 -4.4450 16 6 1.1460 -3.3430 -5.4760 17 6 0.7986 -2.4666 -6.5038 18 6 -0.0339 -2.9100 -7.5097 19 7 -0.5084 -4.1418 -7.5016 20 6 -0.2076 -4.9991 -6.5441 21 6 0.6225 -4.6355 -5.5048 22 6 1.7203 -1.5308 -4.0643 23 6 2.1471 -1.2392 -2.6979 24 6 4.2827 -0.9290 1.2164 25 6 4.2514 -2.3381 0.6191 26 1 -0.4850 0.8401 -0.0004 27 1 5.1914 -0.7296 -1.3398 28 1 3.8151 0.3866 -1.5070 29 1 2.9940 -3.3301 -1.9071 30 1 4.7019 -2.9554 -1.6200 31 1 4.1333 -4.6344 -3.5149 32 1 5.2987 -3.3448 -3.8747 33 1 3.4415 -3.8188 -5.6248 34 1 3.7471 -2.1313 -5.1794 35 1 1.1794 -1.4560 -6.5137 36 1 -0.3049 -2.2395 -8.3118 37 1 -0.6176 -5.9978 -6.5747 38 1 0.8650 -5.3420 -4.7248 39 1 0.6508 -1.3386 -4.1496 40 1 2.2525 -0.8712 -4.7496 41 1 1.9043 -0.2025 -2.4650 42 1 1.6059 -1.8905 -2.0115 43 1 5.2153 -0.3701 1.1391 44 1 3.7027 -0.7535 2.1224 45 1 3.6508 -3.0890 1.1326 46 1 5.1632 -2.7064 0.1489 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602850482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:10 Heat of formation + Delta-G solvation = 78.829520 kcal Electronic energy + Delta-G solvation = -25876.967110 eV Core-core repulsion = 22574.440638 eV Total energy + Delta-G solvation = -3302.526472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.69239 -40.39519 -38.69347 -36.15758 -34.39121 -33.44862 -32.40427 -31.99486 -29.54103 -28.11116 -26.75531 -25.59913 -24.39267 -23.66465 -23.17553 -21.56802 -21.12605 -20.48055 -18.55925 -18.22827 -17.32277 -17.08461 -16.66836 -16.49430 -16.17698 -15.76728 -15.59793 -15.41636 -14.99196 -14.86827 -14.71622 -14.54567 -14.26597 -14.09248 -13.57681 -13.32316 -12.93043 -12.82539 -12.76060 -12.30031 -12.21101 -12.14400 -12.07130 -11.88523 -11.58070 -11.38794 -11.24127 -10.82564 -10.65486 -10.58588 -10.47318 -10.25275 -10.10247 -9.37249 -9.03198 -8.24270 -6.19412 0.20553 0.25768 1.30987 1.39207 1.50101 2.37726 2.68721 2.86099 2.96953 3.25931 3.42057 3.60185 3.84733 4.02440 4.05515 4.12930 4.19461 4.25627 4.28662 4.37072 4.41412 4.45962 4.52420 4.57436 4.63291 4.70650 4.77513 4.84203 4.88961 4.90212 4.90977 4.95334 5.10093 5.15675 5.18183 5.23281 5.30604 5.40476 5.45295 5.52694 5.64423 5.70311 5.74537 5.98479 6.26894 6.34496 6.38529 6.55160 6.76732 7.03996 7.38890 8.90703 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.004854 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.173259 B = 5766.684639 C = 6473.501591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.036 3.964 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.306 1.306 6 H -0.226 1.226 7 C -0.457 4.457 8 H 0.025 0.975 9 C -0.053 4.053 10 C 0.090 3.910 11 N -0.511 5.511 12 C 0.069 3.931 13 C -0.097 4.097 14 C 0.078 3.922 15 N -0.502 5.502 16 C 0.136 3.864 17 C -0.216 4.216 18 C 0.106 3.894 19 N -0.518 5.518 20 C 0.105 3.895 21 C -0.169 4.169 22 C 0.076 3.924 23 C 0.078 3.922 24 C -0.191 4.191 25 C -0.162 4.162 26 H 0.261 0.739 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.016 0.984 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.139 0.861 36 H 0.177 0.823 37 H 0.182 0.818 38 H 0.144 0.856 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.381 -5.846 -12.301 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.162 4.162 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.234 1.234 6 H -0.148 1.148 7 C -0.495 4.495 8 H 0.043 0.957 9 C -0.055 4.055 10 C -0.038 4.038 11 N -0.233 5.233 12 C -0.060 4.060 13 C -0.135 4.135 14 C -0.049 4.049 15 N -0.221 5.221 16 C 0.033 3.967 17 C -0.239 4.239 18 C -0.051 4.051 19 N -0.228 5.228 20 C -0.051 4.051 21 C -0.190 4.190 22 C -0.050 4.050 23 C -0.050 4.050 24 C -0.229 4.229 25 C -0.199 4.199 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.157 0.843 36 H 0.194 0.806 37 H 0.199 0.801 38 H 0.162 0.838 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.882 -6.141 -12.977 16.378 hybrid contribution -0.288 1.550 1.470 2.156 sum 7.593 -4.591 -11.507 14.531 Atomic orbital electron populations 1.70036 1.08062 1.27463 1.52715 1.25446 0.94753 1.01636 0.94384 0.86297 0.81401 0.79972 0.78346 1.19960 1.23373 1.14810 1.20142 0.88823 0.91931 1.48584 0.95720 1.20166 0.92688 1.01059 0.91574 1.21921 0.98142 0.95895 0.87882 1.61951 1.13833 1.08470 1.39068 1.21710 0.99641 0.87846 0.96814 1.22025 0.98822 0.99181 0.93500 1.21778 0.84925 1.00887 0.97263 1.58772 1.05158 1.22673 1.35528 1.19484 0.93980 0.94343 0.88910 1.22795 1.03078 1.02218 0.95777 1.22967 0.92279 0.92529 0.97319 1.67759 1.23813 1.04163 1.27095 1.23075 0.93478 0.99835 0.88744 1.22179 0.99349 0.96564 1.00932 1.21194 0.99597 0.86810 0.97432 1.20926 0.88907 1.00078 0.95097 1.23023 1.01846 0.99479 0.98549 1.22833 1.01538 0.90986 1.04580 0.92982 0.89902 0.93504 0.96528 0.91472 0.91266 0.90063 0.91381 0.93197 0.84337 0.80631 0.80067 0.83833 0.92457 0.92907 0.93802 0.93616 0.88720 0.91490 0.91452 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.96 21.45 0.30 -56.14 16 2 C 0.04 1.94 4.26 84.66 0.36 2.30 16 3 Si 0.91 42.36 24.09 68.60 1.65 44.01 16 4 H -0.27 -12.35 7.10 99.48 0.71 -11.64 16 5 H -0.31 -14.68 7.11 99.48 0.71 -13.98 16 6 H -0.23 -9.47 5.80 99.48 0.58 -8.89 16 7 C -0.46 -24.06 6.05 25.60 0.15 -23.90 16 8 H 0.02 1.52 7.86 -2.91 -0.02 1.49 16 9 C -0.05 -2.21 0.39 -52.93 -0.02 -2.23 16 10 C 0.09 3.39 4.85 86.30 0.42 3.80 16 11 N -0.51 -18.44 4.48 -910.29 -4.08 -22.52 16 12 C 0.07 2.25 4.07 87.26 0.35 2.61 16 13 C -0.10 -2.43 6.42 31.49 0.20 -2.23 16 14 C 0.08 2.01 5.23 87.26 0.46 2.47 16 15 N -0.50 -15.25 4.27 -707.96 -3.02 -18.27 16 16 C 0.14 3.78 4.37 38.57 0.17 3.95 16 17 C -0.22 -5.39 9.01 22.49 0.20 -5.19 16 18 C 0.11 2.44 11.17 84.59 0.95 3.39 16 19 N -0.52 -13.11 10.36 -196.15 -2.03 -15.14 16 20 C 0.11 2.40 11.17 84.59 0.95 3.34 16 21 C -0.17 -4.25 10.06 22.49 0.23 -4.02 16 22 C 0.08 2.63 4.10 83.95 0.34 2.97 16 23 C 0.08 3.22 3.54 83.95 0.30 3.52 16 24 C -0.19 -7.29 8.20 30.62 0.25 -7.04 16 25 C -0.16 -5.93 8.57 30.62 0.26 -5.66 16 26 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.08 2.66 8.10 -2.39 -0.02 2.64 16 28 H 0.05 1.89 4.66 -2.39 -0.01 1.88 16 29 H 0.02 0.65 7.17 -2.38 -0.02 0.64 16 30 H 0.07 2.06 5.16 -2.39 -0.01 2.05 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.57 7.57 -2.38 -0.02 1.55 16 34 H 0.05 1.32 7.16 -2.39 -0.02 1.30 16 35 H 0.14 3.18 7.00 -2.91 -0.02 3.16 16 36 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 38 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 39 H 0.06 2.10 7.57 -2.39 -0.02 2.08 16 40 H 0.05 1.66 6.88 -2.39 -0.02 1.64 16 41 H 0.04 2.05 5.85 -2.39 -0.01 2.03 16 42 H 0.05 2.29 5.12 -2.38 -0.01 2.28 16 43 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 44 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.10 3.14 6.83 -2.39 -0.02 3.12 16 Total: -1.00 -62.63 338.74 -0.77 -63.40 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.84 Total: 26.59 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 5.57 Total: -21.93 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -8.83 Total: -112.08 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.65 Total: 44.01 kcal Total: -62.63 -0.77 -63.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602850482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.231 kcal (2) G-P(sol) polarization free energy of solvation -62.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds