Wall clock time and date at job start Tue Mar 31 2020 09:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47174 * 2 1 4 4 C 1.53001 * 109.47316 * 239.99820 * 2 1 3 5 5 Si 1.86299 * 109.46854 * 119.99873 * 2 1 3 6 6 C 1.86295 * 109.47154 * 299.99730 * 5 2 1 7 7 C 1.86302 * 109.47162 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47305 * 60.00097 * 5 2 1 9 9 C 1.42895 * 113.99902 * 180.02562 * 8 5 2 10 10 C 1.53009 * 109.46927 * 179.97438 * 9 8 5 11 11 N 1.46896 * 109.47120 * 67.08334 * 10 9 8 12 12 C 1.47013 * 110.99822 * 285.71797 * 11 10 9 13 13 C 1.53104 * 109.25605 * 177.60704 * 12 11 10 14 14 O 1.43015 * 109.25599 * 56.85386 * 13 12 11 15 15 C 1.43014 * 113.73603 * 301.32659 * 14 13 12 16 16 C 1.47018 * 110.99958 * 162.08567 * 11 10 9 17 17 C 1.50691 * 109.50301 * 302.37010 * 16 11 10 18 18 N 1.27937 * 120.00575 * 3.47672 * 17 16 11 19 19 Si 1.86807 * 119.99572 * 183.48072 * 17 16 11 20 20 H 1.48499 * 109.47397 * 59.99745 * 19 17 16 21 21 H 1.48507 * 109.46872 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46943 * 299.99682 * 19 17 16 23 23 H 1.09003 * 109.47216 * 300.00396 * 1 2 3 24 24 H 1.09004 * 109.47207 * 60.00312 * 1 2 3 25 25 H 1.08998 * 109.47665 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47010 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47323 * 299.99381 * 3 2 1 28 28 H 1.08995 * 109.47517 * 59.99995 * 3 2 1 29 29 H 1.09010 * 109.46629 * 300.00267 * 4 2 1 30 30 H 1.08994 * 109.47049 * 59.99833 * 4 2 1 31 31 H 1.08990 * 109.47337 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.47321 * 179.97438 * 6 5 2 33 33 H 1.08998 * 109.47542 * 300.00080 * 6 5 2 34 34 H 1.09003 * 109.47009 * 60.00164 * 6 5 2 35 35 H 1.08999 * 109.47543 * 300.00285 * 7 5 2 36 36 H 1.09000 * 109.46652 * 59.99835 * 7 5 2 37 37 H 1.08994 * 109.47506 * 179.97438 * 7 5 2 38 38 H 1.09003 * 109.47143 * 299.99557 * 9 8 5 39 39 H 1.08991 * 109.47703 * 60.00025 * 9 8 5 40 40 H 1.09001 * 109.46607 * 187.08428 * 10 9 8 41 41 H 1.08994 * 109.47116 * 307.08181 * 10 9 8 42 42 H 1.09000 * 109.51309 * 297.54119 * 12 11 10 43 43 H 1.09002 * 109.50924 * 57.67884 * 12 11 10 44 44 H 1.08994 * 109.50719 * 296.91185 * 13 12 11 45 45 H 1.08999 * 109.50554 * 176.78465 * 13 12 11 46 46 H 1.09002 * 109.50853 * 298.73706 * 15 14 13 47 47 H 1.09001 * 109.53980 * 178.63042 * 15 14 13 48 48 H 1.08998 * 109.50187 * 62.45589 * 16 11 10 49 49 H 0.97005 * 120.00287 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8782 1.5212 6 6 1.5299 0.0001 3.0422 7 6 4.0139 -0.8789 1.5209 8 8 1.6072 -2.4160 1.5212 9 6 2.0283 -3.1813 2.6521 10 6 1.4625 -4.5990 2.5478 11 7 2.0839 -5.2919 1.4112 12 6 1.5486 -4.7955 0.1351 13 6 2.2643 -5.4998 -1.0207 14 8 2.1067 -6.9144 -0.8811 15 6 2.6177 -7.4318 0.3504 16 6 1.9057 -6.7472 1.5201 17 6 2.4939 -7.2301 2.8207 18 7 2.9794 -6.3899 3.6544 19 14 2.5141 -9.0559 3.2156 20 1 3.2945 -9.7780 2.1788 21 1 3.1423 -9.2679 4.5444 22 1 1.1223 -9.5731 3.2372 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7490 -1.2491 30 1 1.6767 -0.2075 -2.1392 31 1 3.1299 -0.7217 -1.2490 32 1 1.8928 -0.5140 3.9323 33 1 1.8933 1.0277 3.0423 34 1 0.4399 0.0001 3.0422 35 1 4.3769 -1.3930 0.6309 36 1 4.3775 0.1486 1.5206 37 1 4.3772 -1.3923 2.4110 38 1 3.1172 -3.2251 2.6760 39 1 1.6635 -2.7112 3.5652 40 1 1.6768 -5.1442 3.4670 41 1 0.3840 -4.5496 2.3977 42 1 0.4801 -5.0042 0.0827 43 1 1.7141 -3.7205 0.0645 44 1 3.3245 -5.2478 -0.9999 45 1 1.8314 -5.1771 -1.9675 46 1 3.6883 -7.2360 0.4111 47 1 2.4411 -8.5065 0.3955 48 1 0.8429 -6.9869 1.4899 49 1 3.3583 -6.7009 4.4915 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808737129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:29 Heat of formation + Delta-G solvation = -92.915611 kcal Electronic energy + Delta-G solvation = -25092.170934 eV Core-core repulsion = 21792.146071 eV Total energy + Delta-G solvation = -3300.024863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83042 -38.24161 -37.25228 -36.82226 -35.15424 -32.06148 -30.86566 -29.33855 -29.04399 -27.83841 -27.35416 -27.02335 -25.53425 -22.78755 -22.31163 -20.51658 -20.37370 -18.32465 -17.53753 -17.34537 -16.93798 -16.40825 -15.92430 -15.80135 -15.64403 -15.52326 -14.87359 -14.84331 -14.73466 -14.52514 -14.33195 -13.97471 -13.88371 -13.47929 -13.39499 -13.22258 -13.12202 -12.93109 -12.90806 -12.79598 -12.65222 -12.45790 -12.37504 -12.33674 -12.12704 -11.92854 -11.72437 -11.61529 -11.38800 -11.23241 -11.12616 -10.44698 -10.17417 -10.02985 -9.68680 -9.12537 0.67863 0.92819 1.27439 1.54747 1.60748 1.73597 1.82474 2.12795 2.54050 2.84675 3.05751 3.46975 3.92767 4.13634 4.13664 4.14171 4.19034 4.32971 4.43339 4.44571 4.49169 4.54618 4.58327 4.68353 4.72403 4.75231 4.77666 4.79402 4.80886 4.83086 4.86596 4.91154 4.95899 5.00867 5.10751 5.11863 5.15326 5.20361 5.25442 5.33737 5.36874 5.44823 5.49473 5.57254 5.65582 5.67101 6.14101 6.24199 6.26937 6.81103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.375 4.375 3 C -0.136 4.136 4 C -0.133 4.133 5 Si 1.285 2.715 6 C -0.511 4.511 7 C -0.509 4.509 8 O -0.623 6.623 9 C 0.096 3.904 10 C 0.043 3.957 11 N -0.510 5.510 12 C 0.008 3.992 13 C 0.058 3.942 14 O -0.381 6.381 15 C 0.072 3.928 16 C 0.072 3.928 17 C -0.007 4.007 18 N -0.604 5.604 19 Si 0.930 3.070 20 H -0.231 1.231 21 H -0.245 1.245 22 H -0.234 1.234 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.121 0.879 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.122 0.878 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 -1.106 1.641 1.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.190 4.190 5 Si 1.415 2.585 6 C -0.613 4.613 7 C -0.610 4.610 8 O -0.583 6.583 9 C 0.020 3.980 10 C -0.084 4.084 11 N -0.236 5.236 12 C -0.119 4.119 13 C -0.019 4.019 14 O -0.299 6.299 15 C -0.006 4.006 16 C -0.037 4.037 17 C -0.255 4.255 18 N -0.218 5.218 19 Si 0.745 3.255 20 H -0.153 1.153 21 H -0.168 1.168 22 H -0.156 1.156 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.139 0.861 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.090 0.910 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.529 -1.147 1.578 2.022 hybrid contribution -0.405 0.210 0.704 0.839 sum 0.124 -0.937 2.282 2.471 Atomic orbital electron populations 1.21497 0.93915 1.01913 1.01657 1.25793 1.00552 1.02599 1.12895 1.21549 1.00764 0.95023 1.02029 1.21505 1.00622 1.00111 0.96734 0.76729 0.63082 0.54071 0.64617 1.27048 1.06832 1.09350 1.18050 1.27016 1.25177 1.04306 1.04518 1.85428 1.79523 1.45491 1.47893 1.22026 0.99145 0.91030 0.85770 1.22731 0.95800 0.93650 0.96242 1.62113 1.57810 1.01395 1.02301 1.23203 0.96936 1.02979 0.88770 1.22813 1.00477 0.80235 0.98399 1.88015 1.82357 1.22617 1.36904 1.22581 0.97940 0.97684 0.82395 1.21574 0.99062 0.90466 0.92641 1.30220 0.93820 1.05679 0.95798 1.68179 1.06373 1.40958 1.06264 0.85788 0.83441 0.74161 0.82070 1.15314 1.16812 1.15634 0.92834 0.92921 0.92209 0.92554 0.92594 0.92627 0.92251 0.92900 0.92693 0.91535 0.90976 0.91059 0.90933 0.91150 0.91473 0.91562 0.92832 0.86174 0.94797 0.94398 0.86073 0.92264 0.88481 0.91647 0.88364 0.90985 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.01 7.85 37.15 0.29 0.28 16 2 C -0.38 0.12 0.53 -90.62 -0.05 0.07 16 3 C -0.14 0.05 7.85 37.16 0.29 0.34 16 4 C -0.13 0.03 7.85 37.16 0.29 0.32 16 5 Si 1.28 -1.07 8.45 -169.99 -1.44 -2.51 16 6 C -0.51 0.08 8.50 101.05 0.86 0.94 16 7 C -0.51 0.00 8.50 101.05 0.86 0.86 16 8 O -0.62 -0.10 5.62 -35.23 -0.20 -0.30 16 9 C 0.10 0.02 5.42 37.16 0.20 0.22 16 10 C 0.04 0.03 4.99 -3.82 -0.02 0.01 16 11 N -0.51 -0.59 4.30 -227.73 -0.98 -1.57 16 12 C 0.01 0.01 5.31 -3.71 -0.02 -0.01 16 13 C 0.06 0.05 7.01 37.21 0.26 0.31 16 14 O -0.38 -0.88 10.83 -35.23 -0.38 -1.26 16 15 C 0.07 0.02 5.80 37.21 0.22 0.24 16 16 C 0.07 0.01 2.08 -68.76 -0.14 -0.13 16 17 C -0.01 0.01 4.96 -13.90 -0.07 -0.06 16 18 N -0.60 0.28 10.12 56.22 0.57 0.85 16 19 Si 0.93 -1.95 27.97 -169.99 -4.75 -6.71 16 20 H -0.23 0.43 7.09 56.52 0.40 0.83 16 21 H -0.25 0.36 7.11 56.52 0.40 0.76 16 22 H -0.23 0.34 7.11 56.52 0.40 0.74 16 23 H 0.05 -0.01 7.79 -51.93 -0.40 -0.42 16 24 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 25 H 0.06 0.01 7.96 -51.93 -0.41 -0.40 16 26 H 0.06 -0.05 7.79 -51.93 -0.40 -0.45 16 27 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.05 -0.04 7.79 -51.93 -0.40 -0.45 16 29 H 0.06 -0.03 7.85 -51.92 -0.41 -0.43 16 30 H 0.05 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.05 -0.03 7.79 -51.93 -0.40 -0.43 16 32 H 0.07 -0.02 7.48 -51.93 -0.39 -0.41 16 33 H 0.07 -0.02 7.79 -51.93 -0.40 -0.43 16 34 H 0.07 0.01 7.79 -51.93 -0.40 -0.40 16 35 H 0.07 0.02 7.79 -51.93 -0.40 -0.38 16 36 H 0.07 -0.01 7.79 -51.93 -0.40 -0.42 16 37 H 0.07 0.01 7.48 -51.93 -0.39 -0.38 16 38 H 0.07 0.02 7.21 -51.93 -0.37 -0.35 16 39 H 0.05 -0.05 7.21 -51.93 -0.37 -0.43 16 40 H 0.12 0.05 4.69 -51.98 -0.24 -0.20 16 41 H 0.03 0.04 8.01 -51.93 -0.42 -0.37 16 42 H 0.04 0.06 8.13 -51.93 -0.42 -0.36 16 43 H 0.12 0.10 5.21 -51.93 -0.27 -0.17 16 44 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 45 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 46 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 47 H 0.10 -0.15 6.86 -51.93 -0.36 -0.51 16 48 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 49 H 0.33 -0.69 8.23 -40.82 -0.34 -1.03 16 LS Contribution 370.89 15.07 5.59 5.59 Total: 0.00 -3.50 370.89 -8.00 -11.50 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -9.38 Total: -8.99 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 2.97 Total: 3.39 kcal Atomic # 7 Polarization: -0.30 SS G_CDS: -0.41 Total: -0.71 kcal Atomic # 8 Polarization: -0.98 SS G_CDS: -0.58 Total: -1.56 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: -6.19 Total: -9.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -3.50 -8.00 -11.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808737129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.411 kcal (2) G-P(sol) polarization free energy of solvation -3.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds