Wall clock time and date at job start Tue Mar 31 2020 09:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47174 * 2 1 4 4 C 1.53001 * 109.47316 * 239.99820 * 2 1 3 5 5 Si 1.86299 * 109.46854 * 119.99873 * 2 1 3 6 6 C 1.86295 * 109.47154 * 299.99730 * 5 2 1 7 7 C 1.86302 * 109.47162 * 179.97438 * 5 2 1 8 8 O 1.63102 * 109.47305 * 60.00097 * 5 2 1 9 9 C 1.42895 * 113.99902 * 180.02562 * 8 5 2 10 10 C 1.53009 * 109.46927 * 179.97438 * 9 8 5 11 11 N 1.46896 * 109.47120 * 67.08334 * 10 9 8 12 12 C 1.47013 * 110.99822 * 285.71797 * 11 10 9 13 13 C 1.53104 * 109.25605 * 177.60704 * 12 11 10 14 14 O 1.43015 * 109.25599 * 56.85386 * 13 12 11 15 15 C 1.43014 * 113.73603 * 301.32659 * 14 13 12 16 16 C 1.47018 * 110.99958 * 162.08567 * 11 10 9 17 17 C 1.50691 * 109.50301 * 302.37010 * 16 11 10 18 18 N 1.27937 * 120.00575 * 3.47672 * 17 16 11 19 19 Si 1.86807 * 119.99572 * 183.48072 * 17 16 11 20 20 H 1.48499 * 109.47397 * 59.99745 * 19 17 16 21 21 H 1.48507 * 109.46872 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46943 * 299.99682 * 19 17 16 23 23 H 1.09003 * 109.47216 * 300.00396 * 1 2 3 24 24 H 1.09004 * 109.47207 * 60.00312 * 1 2 3 25 25 H 1.08998 * 109.47665 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47010 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.47323 * 299.99381 * 3 2 1 28 28 H 1.08995 * 109.47517 * 59.99995 * 3 2 1 29 29 H 1.09010 * 109.46629 * 300.00267 * 4 2 1 30 30 H 1.08994 * 109.47049 * 59.99833 * 4 2 1 31 31 H 1.08990 * 109.47337 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.47321 * 179.97438 * 6 5 2 33 33 H 1.08998 * 109.47542 * 300.00080 * 6 5 2 34 34 H 1.09003 * 109.47009 * 60.00164 * 6 5 2 35 35 H 1.08999 * 109.47543 * 300.00285 * 7 5 2 36 36 H 1.09000 * 109.46652 * 59.99835 * 7 5 2 37 37 H 1.08994 * 109.47506 * 179.97438 * 7 5 2 38 38 H 1.09003 * 109.47143 * 299.99557 * 9 8 5 39 39 H 1.08991 * 109.47703 * 60.00025 * 9 8 5 40 40 H 1.09001 * 109.46607 * 187.08428 * 10 9 8 41 41 H 1.08994 * 109.47116 * 307.08181 * 10 9 8 42 42 H 1.09000 * 109.51309 * 297.54119 * 12 11 10 43 43 H 1.09002 * 109.50924 * 57.67884 * 12 11 10 44 44 H 1.08994 * 109.50719 * 296.91185 * 13 12 11 45 45 H 1.08999 * 109.50554 * 176.78465 * 13 12 11 46 46 H 1.09002 * 109.50853 * 298.73706 * 15 14 13 47 47 H 1.09001 * 109.53980 * 178.63042 * 15 14 13 48 48 H 1.08998 * 109.50187 * 62.45589 * 16 11 10 49 49 H 0.97005 * 120.00287 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1509 -0.8782 1.5212 6 6 1.5299 0.0001 3.0422 7 6 4.0139 -0.8789 1.5209 8 8 1.6072 -2.4160 1.5212 9 6 2.0283 -3.1813 2.6521 10 6 1.4625 -4.5990 2.5478 11 7 2.0839 -5.2919 1.4112 12 6 1.5486 -4.7955 0.1351 13 6 2.2643 -5.4998 -1.0207 14 8 2.1067 -6.9144 -0.8811 15 6 2.6177 -7.4318 0.3504 16 6 1.9057 -6.7472 1.5201 17 6 2.4939 -7.2301 2.8207 18 7 2.9794 -6.3899 3.6544 19 14 2.5141 -9.0559 3.2156 20 1 3.2945 -9.7780 2.1788 21 1 3.1423 -9.2679 4.5444 22 1 1.1223 -9.5731 3.2372 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9563 0.8899 29 1 1.6766 -1.7490 -1.2491 30 1 1.6767 -0.2075 -2.1392 31 1 3.1299 -0.7217 -1.2490 32 1 1.8928 -0.5140 3.9323 33 1 1.8933 1.0277 3.0423 34 1 0.4399 0.0001 3.0422 35 1 4.3769 -1.3930 0.6309 36 1 4.3775 0.1486 1.5206 37 1 4.3772 -1.3923 2.4110 38 1 3.1172 -3.2251 2.6760 39 1 1.6635 -2.7112 3.5652 40 1 1.6768 -5.1442 3.4670 41 1 0.3840 -4.5496 2.3977 42 1 0.4801 -5.0042 0.0827 43 1 1.7141 -3.7205 0.0645 44 1 3.3245 -5.2478 -0.9999 45 1 1.8314 -5.1771 -1.9675 46 1 3.6883 -7.2360 0.4111 47 1 2.4411 -8.5065 0.3955 48 1 0.8429 -6.9869 1.4899 49 1 3.3583 -6.7009 4.4915 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808737129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:29 Heat of formation + Delta-G solvation = -84.575339 kcal Electronic energy + Delta-G solvation = -25091.809273 eV Core-core repulsion = 21792.146071 eV Total energy + Delta-G solvation = -3299.663201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86379 -38.26992 -37.24057 -36.80373 -35.16537 -32.07111 -30.90692 -29.32488 -29.03197 -27.81577 -27.34843 -27.05742 -25.54904 -22.81346 -22.33277 -20.51446 -20.36056 -18.30008 -17.51654 -17.37251 -16.97397 -16.42538 -15.91879 -15.83210 -15.65726 -15.51393 -14.85695 -14.81914 -14.71224 -14.49185 -14.35887 -13.95421 -13.87312 -13.47197 -13.37893 -13.20558 -13.07898 -12.93068 -12.90342 -12.78128 -12.63815 -12.47707 -12.36275 -12.26744 -12.07342 -11.91319 -11.70669 -11.60061 -11.37613 -11.22495 -11.12637 -10.49188 -10.18052 -10.01561 -9.61892 -9.18548 0.78217 1.06279 1.44599 1.59419 1.75669 1.86667 1.88197 2.16990 2.55871 2.82185 3.05220 3.52996 3.92906 4.10483 4.15251 4.15982 4.18216 4.31857 4.37492 4.43630 4.49225 4.51821 4.59809 4.69182 4.74376 4.77102 4.77862 4.79585 4.81006 4.84442 4.86766 4.91032 4.94094 5.02536 5.10618 5.11017 5.12665 5.18224 5.24996 5.32809 5.37916 5.45023 5.49775 5.59146 5.66233 5.66837 6.10777 6.19685 6.22539 6.93822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.379 4.379 3 C -0.141 4.141 4 C -0.135 4.135 5 Si 1.317 2.683 6 C -0.519 4.519 7 C -0.516 4.516 8 O -0.631 6.631 9 C 0.093 3.907 10 C 0.042 3.958 11 N -0.518 5.518 12 C 0.012 3.988 13 C 0.057 3.943 14 O -0.399 6.399 15 C 0.068 3.932 16 C 0.067 3.933 17 C -0.008 4.008 18 N -0.619 5.619 19 Si 0.970 3.030 20 H -0.231 1.231 21 H -0.253 1.253 22 H -0.242 1.242 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.026 0.974 42 H 0.028 0.972 43 H 0.122 0.878 44 H 0.058 0.942 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.116 0.884 48 H 0.073 0.927 49 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 -1.398 2.035 2.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.422 4.422 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.446 2.554 6 C -0.620 4.620 7 C -0.617 4.617 8 O -0.591 6.591 9 C 0.017 3.983 10 C -0.085 4.085 11 N -0.244 5.244 12 C -0.116 4.116 13 C -0.020 4.020 14 O -0.317 6.317 15 C -0.010 4.010 16 C -0.043 4.043 17 C -0.255 4.255 18 N -0.234 5.234 19 Si 0.785 3.215 20 H -0.154 1.154 21 H -0.176 1.176 22 H -0.165 1.165 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.140 0.860 44 H 0.077 0.923 45 H 0.125 0.875 46 H 0.082 0.918 47 H 0.133 0.867 48 H 0.090 0.910 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.758 -1.426 1.972 2.549 hybrid contribution -0.470 0.319 0.582 0.813 sum 0.288 -1.107 2.554 2.798 Atomic orbital electron populations 1.21520 0.94257 1.01792 1.01632 1.25871 1.00298 1.02790 1.13210 1.21601 1.01176 0.94969 1.02084 1.21534 1.00887 1.00176 0.96639 0.76160 0.62117 0.53334 0.63802 1.27135 1.06754 1.09657 1.18473 1.27118 1.25945 1.04392 1.04241 1.85414 1.79625 1.45959 1.48055 1.22080 0.99040 0.90908 0.86245 1.22764 0.95305 0.94115 0.96319 1.62148 1.57854 1.02036 1.02336 1.23161 0.96324 1.03054 0.89034 1.22877 1.00477 0.79811 0.98829 1.87983 1.82628 1.23224 1.37899 1.22732 0.97802 0.98643 0.81800 1.21659 0.99259 0.90024 0.93368 1.30369 0.93392 1.06598 0.95168 1.68129 1.06739 1.41707 1.06829 0.85221 0.82575 0.72330 0.81351 1.15395 1.17576 1.16517 0.92455 0.93375 0.92375 0.92013 0.93078 0.92089 0.92103 0.93367 0.92321 0.91343 0.90754 0.91262 0.91318 0.90893 0.91637 0.91774 0.91616 0.85856 0.95591 0.95372 0.86020 0.92342 0.87508 0.91767 0.86659 0.90957 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.06 7.85 71.98 0.56 0.50 16 2 C -0.38 0.16 0.53 -10.80 -0.01 0.16 16 3 C -0.14 0.09 7.85 71.98 0.56 0.65 16 4 C -0.14 0.01 7.85 71.98 0.56 0.57 16 5 Si 1.32 -2.14 8.45 68.60 0.58 -1.56 16 6 C -0.52 0.29 8.50 113.37 0.96 1.25 16 7 C -0.52 -0.01 8.50 113.37 0.96 0.95 16 8 O -0.63 -0.36 5.62 -148.98 -0.84 -1.19 16 9 C 0.09 0.05 5.42 71.99 0.39 0.44 16 10 C 0.04 0.08 4.99 86.31 0.43 0.51 16 11 N -0.52 -1.45 4.30 -874.39 -3.76 -5.21 16 12 C 0.01 0.03 5.31 86.32 0.46 0.49 16 13 C 0.06 0.13 7.01 72.02 0.50 0.63 16 14 O -0.40 -1.98 10.83 -148.98 -1.61 -3.59 16 15 C 0.07 0.05 5.80 72.01 0.42 0.47 16 16 C 0.07 0.05 2.08 44.18 0.09 0.14 16 17 C -0.01 0.02 4.96 88.67 0.44 0.46 16 18 N -0.62 0.58 10.12 24.10 0.24 0.83 16 19 Si 0.97 -4.61 27.97 68.60 1.92 -2.69 16 20 H -0.23 1.08 7.09 99.48 0.71 1.78 16 21 H -0.25 0.90 7.11 99.48 0.71 1.61 16 22 H -0.24 0.83 7.11 99.48 0.71 1.53 16 23 H 0.06 -0.02 7.79 -2.39 -0.02 -0.04 16 24 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 25 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 26 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 27 H 0.05 0.02 8.14 -2.38 -0.02 0.00 16 28 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 29 H 0.06 -0.03 7.85 -2.38 -0.02 -0.05 16 30 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 32 H 0.07 -0.06 7.48 -2.38 -0.02 -0.08 16 33 H 0.07 -0.07 7.79 -2.39 -0.02 -0.09 16 34 H 0.07 0.00 7.79 -2.39 -0.02 -0.02 16 35 H 0.07 0.06 7.79 -2.39 -0.02 0.04 16 36 H 0.07 -0.04 7.79 -2.39 -0.02 -0.06 16 37 H 0.06 0.03 7.48 -2.39 -0.02 0.01 16 38 H 0.06 0.06 7.21 -2.39 -0.02 0.04 16 39 H 0.07 -0.15 7.21 -2.39 -0.02 -0.16 16 40 H 0.12 0.13 4.69 -2.49 -0.01 0.12 16 41 H 0.03 0.08 8.01 -2.39 -0.02 0.06 16 42 H 0.03 0.13 8.13 -2.39 -0.02 0.11 16 43 H 0.12 0.28 5.21 -2.39 -0.01 0.27 16 44 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.12 -0.40 6.86 -2.39 -0.02 -0.41 16 48 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 49 H 0.34 -1.46 8.23 -92.70 -0.76 -2.23 16 Total: 0.00 -7.68 370.89 3.76 -3.92 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: 0.88 Total: 2.29 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.35 Total: 7.22 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -3.52 Total: -4.38 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: -2.45 Total: -4.79 kcal Atomic # 14 Polarization: -6.75 SS G_CDS: 2.50 Total: -4.26 kcal Total: -7.68 3.76 -3.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808737129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.659 kcal (2) G-P(sol) polarization free energy of solvation -7.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds