Wall clock time and date at job start Tue Mar 31 2020 07:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.47080 * 2 1 4 4 C 1.34236 * 117.00002 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99873 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99944 * 180.27440 * 4 3 2 7 7 H 1.09003 * 109.47160 * 14.72685 * 6 4 3 8 8 F 1.39904 * 109.47138 * 254.72517 * 6 4 3 9 9 C 1.53001 * 109.46875 * 134.72803 * 6 4 3 10 10 C 1.53933 * 113.73128 * 161.72835 * 9 6 4 11 11 N 1.47961 * 86.18068 * 221.91812 * 10 9 6 12 12 C 1.46895 * 111.00084 * 137.58067 * 11 10 9 13 13 C 1.53006 * 109.47195 * 76.85852 * 12 11 10 14 14 C 1.52991 * 109.47553 * 174.96540 * 13 12 11 15 15 C 1.53000 * 109.46827 * 294.96703 * 13 12 11 16 16 C 1.52998 * 109.47036 * 54.96260 * 13 12 11 17 17 C 1.50700 * 109.47049 * 180.02562 * 16 13 12 18 18 H 1.07999 * 119.99889 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00037 * 179.97438 * 17 16 13 20 20 N 1.31510 * 120.00299 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47170 * 89.99849 * 21 19 17 23 23 H 1.48498 * 109.46866 * 209.99881 * 21 19 17 24 24 H 1.48505 * 109.46912 * 329.99853 * 21 19 17 25 25 C 1.47963 * 90.76057 * 24.68767 * 11 10 9 26 26 H 1.09005 * 109.46922 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47209 * 300.00038 * 1 2 3 28 28 H 1.09005 * 109.46533 * 60.00054 * 1 2 3 29 29 H 1.08999 * 109.47209 * 239.99962 * 2 1 3 30 30 H 1.08997 * 109.47131 * 120.00108 * 2 1 3 31 31 H 1.08997 * 112.93887 * 293.43307 * 9 6 4 32 32 H 1.08993 * 113.76572 * 336.23271 * 10 9 6 33 33 H 1.09000 * 113.76167 * 107.60375 * 10 9 6 34 34 H 1.09004 * 109.47375 * 196.85273 * 12 11 10 35 35 H 1.08997 * 109.47477 * 316.85455 * 12 11 10 36 36 H 1.09007 * 109.47099 * 54.17786 * 14 13 12 37 37 H 1.08992 * 109.47472 * 174.18148 * 14 13 12 38 38 H 1.09007 * 109.46922 * 294.18426 * 14 13 12 39 39 H 1.08999 * 109.47358 * 68.65896 * 15 13 12 40 40 H 1.08997 * 109.47113 * 188.65902 * 15 13 12 41 41 H 1.09007 * 109.46810 * 308.65782 * 15 13 12 42 42 H 1.09004 * 109.47362 * 299.99965 * 16 13 12 43 43 H 1.09000 * 109.47564 * 60.00540 * 16 13 12 44 44 H 0.96993 * 120.00408 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.75892 * 220.99030 * 25 11 10 46 46 H 1.09007 * 113.75495 * 89.63188 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0068 7 1 3.1412 3.6518 0.2715 8 9 4.4199 3.2413 -1.2643 9 6 5.0540 3.0159 1.0318 10 6 5.9949 4.2163 0.8243 11 7 7.0986 3.2757 1.1181 12 6 8.2260 3.4836 0.1997 13 6 9.0079 4.7280 0.6254 14 6 10.2521 4.8738 -0.2528 15 6 8.1228 5.9658 0.4654 16 6 9.4303 4.5889 2.0893 17 6 10.1998 5.8148 2.5088 18 1 10.3701 6.6135 1.8020 19 6 10.6855 5.9172 3.7951 20 7 10.4768 4.9454 4.6562 21 14 11.6388 7.4372 4.3152 22 1 10.6976 8.4511 4.8551 23 1 12.6242 7.0689 5.3633 24 1 12.3523 8.0000 3.1407 25 6 6.2656 2.1321 0.6848 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.7068 2.9008 2.0586 32 1 6.0026 4.5970 -0.1969 33 1 5.8765 5.0014 1.5712 34 1 8.8831 2.6144 0.2283 35 1 7.8487 3.6206 -0.8137 36 1 9.9585 4.8691 -1.3026 37 1 10.7532 5.8133 -0.0199 38 1 10.9311 4.0427 -0.0617 39 1 7.3186 5.9349 1.2006 40 1 8.7219 6.8632 0.6197 41 1 7.6974 5.9810 -0.5381 42 1 8.5438 4.4851 2.7150 43 1 10.0608 3.7071 2.2033 44 1 10.8188 5.0173 5.5610 45 1 6.3635 1.2519 1.3202 46 1 6.3524 1.9032 -0.3774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816634581.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:31 Heat of formation + Delta-G solvation = -109.195029 kcal Electronic energy + Delta-G solvation = -25640.177606 eV Core-core repulsion = 21866.435801 eV Total energy + Delta-G solvation = -3773.741805 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.28528 -40.78148 -39.76892 -37.04787 -36.11427 -32.46250 -32.21758 -31.00877 -27.81308 -27.12862 -26.75091 -25.26753 -24.24320 -23.14484 -22.47135 -21.21239 -19.53507 -18.50935 -17.95967 -17.36712 -16.95702 -16.46946 -16.11883 -15.88581 -15.23818 -14.65505 -14.42988 -14.26504 -14.14314 -13.65922 -13.23983 -13.21180 -12.92589 -12.78706 -12.51206 -12.36217 -12.26986 -12.00515 -11.92693 -11.86257 -11.38912 -11.24344 -11.06162 -10.92876 -10.90558 -10.70597 -10.57348 -10.36134 -10.25310 -10.17036 -9.91659 -9.52279 -8.93194 -8.67903 -8.31864 -8.14139 -5.84176 -3.84011 1.69870 2.07980 3.38361 3.44992 3.47548 3.90934 4.07630 4.24364 4.48523 4.52369 4.56471 4.56750 4.59614 4.77563 4.86290 5.23715 5.28997 5.35994 5.39734 5.49709 5.51328 5.54919 5.67898 5.74676 5.90413 5.95591 6.00989 6.07357 6.13880 6.26011 6.28021 6.41414 6.53181 6.75491 6.79422 6.86655 7.10764 7.24719 7.29340 7.36327 7.57255 7.90662 8.10624 8.25918 8.62359 9.23564 9.77578 11.26918 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.028451 B = 0.002971 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.909479 B = 9423.278125 C = 9778.109654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.354 6.354 4 C 0.443 3.557 5 O -0.476 6.476 6 C 0.118 3.882 7 H 0.119 0.881 8 F -0.181 7.181 9 C -0.149 4.149 10 C 0.020 3.980 11 N -0.457 5.457 12 C 0.036 3.964 13 C -0.058 4.058 14 C -0.126 4.126 15 C -0.132 4.132 16 C 0.044 3.956 17 C -0.508 4.508 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.019 3.981 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.032 0.968 43 H 0.009 0.991 44 H 0.257 0.743 45 H 0.091 0.909 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.590 -7.143 -10.681 23.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.271 6.271 4 C 0.283 3.717 5 O -0.361 6.361 6 C 0.080 3.920 7 H 0.137 0.863 8 F -0.161 7.161 9 C -0.168 4.168 10 C -0.108 4.108 11 N -0.179 5.179 12 C -0.092 4.092 13 C -0.059 4.059 14 C -0.183 4.183 15 C -0.189 4.189 16 C 0.007 3.993 17 C -0.547 4.547 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.711 3.289 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.201 1.201 25 C -0.110 4.110 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.995 -7.527 -9.897 22.703 hybrid contribution 0.366 0.612 -0.558 0.905 sum -18.629 -6.915 -10.455 22.453 Atomic orbital electron populations 1.21820 0.92357 1.03144 1.03671 1.23110 0.95558 0.79759 1.02941 1.86520 1.24024 1.33009 1.83573 1.24092 0.81132 0.92919 0.73600 1.90711 1.60260 1.42625 1.42515 1.21104 0.97741 0.91501 0.81651 0.86330 1.92904 1.89055 1.93322 1.40841 1.23813 0.92960 1.01023 0.99052 1.24102 0.89778 0.95144 1.01813 1.68666 1.02869 1.01989 1.44397 1.22757 0.93808 1.00104 0.92558 1.20594 0.93488 0.91788 0.99990 1.21725 0.97837 1.02349 0.96438 1.21979 0.99794 0.98812 0.98320 1.19029 0.96543 0.95955 0.87727 1.21348 1.33591 1.03723 0.96015 0.92786 1.24994 0.96644 0.95889 0.97000 1.69980 1.46650 1.32008 1.04852 0.86749 0.79982 0.83869 0.78279 1.20924 1.21486 1.20113 1.23837 0.90600 0.96141 1.00387 0.90065 0.91288 0.91402 0.91023 0.90824 0.86010 0.90440 0.88255 0.91313 0.95432 0.95397 0.91928 0.93507 0.92381 0.92447 0.95646 0.94935 0.97271 0.93353 0.89088 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.29 37.16 0.38 -0.40 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.35 -3.49 10.22 -39.27 -0.40 -3.89 16 4 C 0.44 5.07 7.30 36.00 0.26 5.33 16 5 O -0.48 -6.64 15.01 -18.75 -0.28 -6.92 16 6 C 0.12 1.24 3.96 -27.88 -0.11 1.13 16 7 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 8 F -0.18 -2.23 15.47 2.25 0.03 -2.19 16 9 C -0.15 -1.84 3.87 -89.69 -0.35 -2.18 16 10 C 0.02 0.29 5.04 -2.77 -0.01 0.28 16 11 N -0.46 -7.95 5.24 -238.29 -1.25 -9.20 16 12 C 0.04 0.65 3.91 -3.82 -0.01 0.64 16 13 C -0.06 -1.19 0.61 -154.51 -0.09 -1.28 16 14 C -0.13 -2.44 8.10 37.15 0.30 -2.14 16 15 C -0.13 -2.49 6.75 37.16 0.25 -2.24 16 16 C 0.04 1.15 3.82 -27.88 -0.11 1.04 16 17 C -0.51 -14.15 7.81 -34.44 -0.27 -14.42 16 18 H 0.05 1.46 5.73 -52.49 -0.30 1.16 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 21 Si 0.88 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.02 0.28 5.81 -2.77 -0.02 0.27 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.08 6.11 -51.93 -0.32 0.76 16 33 H 0.10 1.45 6.85 -51.93 -0.36 1.09 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.03 0.46 7.66 -51.93 -0.40 0.06 16 36 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 37 H 0.06 1.28 6.80 -51.93 -0.35 0.93 16 38 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 39 H 0.06 1.09 5.29 -51.93 -0.27 0.81 16 40 H 0.06 1.15 6.89 -51.93 -0.36 0.79 16 41 H 0.02 0.41 7.71 -51.92 -0.40 0.01 16 42 H 0.03 0.91 7.47 -51.93 -0.39 0.52 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 1.06 7.46 -51.93 -0.39 0.68 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -32.25 362.97 -8.09 -40.34 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.74 Total: -2.13 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 0.36 Total: -11.80 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.51 Total: -35.79 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.68 Total: -10.82 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.25 -8.09 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816634581.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.852 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds