Wall clock time and date at job start Tue Mar 31 2020 09:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.48742 * 2 1 4 4 C 1.53047 * 109.50776 * 239.95298 * 2 1 3 5 5 N 1.46958 * 109.36566 * 181.61989 * 4 2 1 6 6 C 1.39169 * 110.99764 * 183.18249 * 5 4 2 7 7 C 1.39477 * 120.86814 * 359.72722 * 6 5 4 8 8 C 1.37892 * 119.06599 * 179.72796 * 7 6 5 9 9 N 1.31994 * 120.84480 * 0.55152 * 8 7 6 10 10 C 1.32004 * 121.90669 * 359.71949 * 9 8 7 11 11 C 1.37891 * 120.84422 * 359.97438 * 10 9 8 12 12 C 1.46999 * 110.88957 * 59.31677 * 5 4 2 13 13 C 1.53048 * 109.34263 * 300.69463 * 12 5 4 14 14 N 1.46949 * 109.48743 * 120.04559 * 2 1 3 15 15 C 1.46898 * 111.00233 * 303.17699 * 14 2 1 16 16 C 1.53004 * 109.47111 * 159.40753 * 15 14 2 17 17 C 1.50692 * 115.55055 * 155.48030 * 16 15 14 18 18 H 1.08006 * 120.00272 * 144.92312 * 17 16 15 19 19 C 1.37879 * 120.00353 * 324.92105 * 17 16 15 20 20 N 1.31510 * 120.00406 * 159.84870 * 19 17 16 21 21 Si 1.86803 * 119.99504 * 339.84817 * 19 17 16 22 22 H 1.48503 * 109.46975 * 95.57193 * 21 19 17 23 23 H 1.48493 * 109.47208 * 215.57053 * 21 19 17 24 24 H 1.48501 * 109.47564 * 335.57661 * 21 19 17 25 25 C 1.52997 * 117.49682 * 9.76458 * 16 15 14 26 26 C 1.52998 * 60.00192 * 252.51404 * 25 16 15 27 27 H 1.09001 * 109.47130 * 299.95717 * 1 2 3 28 28 H 1.09000 * 109.46978 * 59.94943 * 1 2 3 29 29 H 1.08993 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.48847 * 301.58641 * 4 2 1 31 31 H 1.08999 * 109.49410 * 61.62773 * 4 2 1 32 32 H 1.07999 * 120.46166 * 359.96704 * 7 6 5 33 33 H 1.07997 * 119.57972 * 180.29416 * 8 7 6 34 34 H 1.07998 * 119.57631 * 180.02562 * 10 9 8 35 35 H 1.07997 * 120.46597 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.51556 * 180.72035 * 12 5 4 37 37 H 1.08999 * 109.48380 * 60.64615 * 12 5 4 38 38 H 1.08999 * 109.49003 * 298.41338 * 13 12 5 39 39 H 1.09000 * 109.48879 * 178.37203 * 13 12 5 40 40 H 1.09001 * 109.47215 * 279.40186 * 15 14 2 41 41 H 1.09000 * 109.46938 * 39.40395 * 15 14 2 42 42 H 0.96997 * 120.00240 * 180.02562 * 20 19 17 43 43 H 1.08998 * 117.50375 * 0.02562 * 25 16 15 44 44 H 1.08999 * 117.49558 * 145.02588 * 25 16 15 45 45 H 1.08995 * 117.50315 * 252.51162 * 26 25 16 46 46 H 1.09006 * 117.49666 * 107.49299 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7223 -1.2487 5 7 3.5102 -0.7545 -1.2261 6 6 4.0140 -1.3417 -2.3829 7 6 3.1573 -1.8145 -3.3769 8 6 3.6968 -2.3847 -4.5106 9 7 5.0040 -2.4953 -4.6561 10 6 5.8473 -2.0651 -3.7361 11 6 5.3886 -1.4773 -2.5762 12 6 4.0008 -1.4484 -0.0267 13 6 3.4893 -0.7258 1.2218 14 7 2.0203 -0.6936 1.1992 15 6 1.4884 -0.0739 2.4202 16 6 1.5737 -1.0714 3.5772 17 6 1.6258 -0.4650 4.9557 18 1 1.1424 -0.9629 5.7834 19 6 2.2905 0.7255 5.1606 20 7 2.0218 1.4546 6.2216 21 14 3.5728 1.3027 3.9309 22 1 2.9460 2.2416 2.9661 23 1 4.6729 1.9935 4.6504 24 1 4.1187 0.1319 3.1985 25 6 2.3632 -2.3606 3.3417 26 6 0.8357 -2.4022 3.4183 27 1 -0.3633 0.5132 0.8904 28 1 -0.3633 0.5146 -0.8895 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6552 -1.7416 -1.2627 31 1 1.7023 -0.1931 -2.1394 32 1 2.0867 -1.7316 -3.2619 33 1 3.0413 -2.7492 -5.2877 34 1 6.9100 -2.1743 -3.8943 35 1 6.0840 -1.1280 -1.8273 36 1 5.0909 -1.4480 -0.0261 37 1 3.6372 -2.4759 -0.0268 38 1 3.8752 0.2935 1.2358 39 1 3.8278 -1.2550 2.1126 40 1 2.0735 0.8135 2.6618 41 1 0.4480 0.2093 2.2604 42 1 2.4892 2.2922 6.3655 43 1 2.8222 -2.4980 2.3626 44 1 2.9206 -2.7703 4.1839 45 1 0.3882 -2.8393 4.3109 46 1 0.2895 -2.5671 2.4895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887134630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:37 Heat of formation + Delta-G solvation = 113.124529 kcal Electronic energy + Delta-G solvation = -25651.803794 eV Core-core repulsion = 22350.764465 eV Total energy + Delta-G solvation = -3301.039329 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.93216 -39.36504 -37.23808 -35.07310 -32.64782 -32.19505 -31.38269 -31.00080 -28.18704 -27.09805 -26.01067 -24.07013 -23.64025 -22.61450 -21.62803 -20.99856 -19.75453 -18.95447 -17.79652 -16.70561 -16.35220 -15.84020 -15.72757 -15.38998 -14.99983 -14.83596 -14.62378 -14.34692 -13.92056 -13.75751 -13.55661 -13.09185 -12.94104 -12.75933 -12.17881 -12.12695 -11.89006 -11.77451 -11.63573 -11.27194 -11.05798 -10.86442 -10.61469 -10.52217 -10.31547 -10.20464 -9.68109 -9.59278 -9.36168 -9.32266 -9.20330 -8.76161 -8.37065 -8.24990 -7.80956 -6.23256 -4.10891 0.99552 1.12941 3.13954 3.27915 3.32901 3.41095 3.73149 4.09065 4.30437 4.31974 4.53069 4.68460 4.82029 4.85231 4.93510 5.03143 5.10085 5.22292 5.24850 5.33804 5.38743 5.42974 5.52910 5.57679 5.62162 5.66142 5.78581 5.84308 5.87933 5.96044 5.96944 6.09283 6.18904 6.25101 6.33799 6.41838 6.47004 6.65389 6.69757 6.74389 6.89017 6.95001 7.13219 7.31936 7.37633 7.45147 7.78139 7.87015 8.48420 8.86368 9.43501 10.87991 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.004299 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.598597 B = 6511.076742 C = 6855.858201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.045 0.955 4 C 0.062 3.938 5 N -0.490 5.490 6 C 0.164 3.836 7 C -0.228 4.228 8 C 0.121 3.879 9 N -0.512 5.512 10 C 0.118 3.882 11 C -0.199 4.199 12 C 0.063 3.937 13 C 0.039 3.961 14 N -0.528 5.528 15 C 0.074 3.926 16 C 0.018 3.982 17 C -0.488 4.488 18 H 0.076 0.924 19 C 0.076 3.924 20 N -0.884 5.884 21 Si 0.872 3.128 22 H -0.287 1.287 23 H -0.301 1.301 24 H -0.242 1.242 25 C -0.212 4.212 26 C -0.179 4.179 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.116 0.884 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.265 0.735 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -4.932 -18.501 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 H 0.063 0.937 4 C -0.065 4.065 5 N -0.204 5.204 6 C 0.056 3.944 7 C -0.251 4.251 8 C -0.036 4.036 9 N -0.223 5.223 10 C -0.038 4.038 11 C -0.222 4.222 12 C -0.062 4.062 13 C -0.089 4.089 14 N -0.253 5.253 15 C -0.052 4.052 16 C 0.017 3.983 17 C -0.525 4.525 18 H 0.094 0.906 19 C -0.127 4.127 20 N -0.519 5.519 21 Si 0.703 3.297 22 H -0.216 1.216 23 H -0.229 1.229 24 H -0.166 1.166 25 C -0.249 4.249 26 C -0.217 4.217 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.133 0.867 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.076 -5.112 -19.025 19.939 hybrid contribution 0.380 1.141 0.290 1.237 sum 3.456 -3.971 -18.736 19.461 Atomic orbital electron populations 1.21901 0.93598 1.02870 1.02113 1.21658 0.95710 0.95987 0.89853 0.93655 1.22424 0.84657 1.00842 0.98575 1.58962 1.10436 1.49532 1.01479 1.19331 0.93619 0.89536 0.91891 1.22291 1.01125 1.04273 0.97452 1.22558 0.91528 0.93951 0.95523 1.67720 1.04026 1.19424 1.31141 1.22576 0.99649 0.92727 0.88826 1.21819 0.94383 1.05123 1.00834 1.22426 1.00045 0.96372 0.87323 1.22863 0.88580 0.99764 0.97664 1.62248 1.07396 1.53555 1.02111 1.22153 0.99674 0.95843 0.87554 1.19228 0.99968 0.85666 0.93488 1.20385 1.34449 1.06077 0.91603 0.90605 1.25007 0.96580 0.95598 0.95514 1.70006 1.39876 1.12552 1.29482 0.87304 0.81910 0.79472 0.81008 1.21567 1.22898 1.16637 1.23318 0.93491 1.07621 1.00501 1.22628 0.94293 1.04641 1.00123 0.91200 0.92424 0.91579 0.92285 0.89896 0.84510 0.82982 0.82814 0.84705 0.89746 0.92503 0.94462 0.86676 0.94456 0.90199 0.92524 0.89661 0.90917 0.90952 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.95 37.16 0.33 -1.51 16 2 C 0.08 1.10 2.56 -67.66 -0.17 0.93 16 3 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 4 C 0.06 0.75 3.59 -3.77 -0.01 0.74 16 5 N -0.49 -6.36 4.75 -170.73 -0.81 -7.17 16 6 C 0.16 1.96 5.65 -83.61 -0.47 1.49 16 7 C -0.23 -2.43 8.88 -39.25 -0.35 -2.78 16 8 C 0.12 1.26 11.17 -17.61 -0.20 1.07 16 9 N -0.51 -6.05 10.36 -13.35 -0.14 -6.18 16 10 C 0.12 1.25 11.17 -17.60 -0.20 1.05 16 11 C -0.20 -2.19 9.28 -39.25 -0.36 -2.55 16 12 C 0.06 0.85 5.39 -3.75 -0.02 0.83 16 13 C 0.04 0.65 2.98 -3.77 -0.01 0.64 16 14 N -0.53 -8.89 3.59 -226.49 -0.81 -9.70 16 15 C 0.07 1.49 4.43 -3.82 -0.02 1.48 16 16 C 0.02 0.40 1.73 -155.66 -0.27 0.13 16 17 C -0.49 -13.29 9.51 -34.44 -0.33 -13.62 16 18 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 19 C 0.08 2.12 5.35 -17.82 -0.10 2.03 16 20 N -0.88 -26.19 13.96 55.43 0.77 -25.42 16 21 Si 0.87 20.72 23.20 -169.99 -3.94 16.77 16 22 H -0.29 -6.83 6.64 56.52 0.38 -6.45 16 23 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 24 H -0.24 -5.20 3.89 56.52 0.22 -4.98 16 25 C -0.21 -4.28 8.25 -26.73 -0.22 -4.50 16 26 C -0.18 -3.64 9.86 -26.73 -0.26 -3.90 16 27 H 0.07 0.97 5.96 -51.93 -0.31 0.66 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.71 7.61 -51.93 -0.40 0.31 16 31 H 0.08 0.88 7.22 -51.93 -0.38 0.51 16 32 H 0.14 1.25 5.97 -52.49 -0.31 0.93 16 33 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.14 1.32 7.27 -52.49 -0.38 0.94 16 36 H 0.08 1.01 6.90 -51.93 -0.36 0.65 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.67 6.69 -51.93 -0.35 0.32 16 39 H 0.12 2.07 3.99 -51.93 -0.21 1.86 16 40 H 0.04 0.85 2.37 -51.93 -0.12 0.72 16 41 H 0.08 1.57 5.36 -51.93 -0.28 1.29 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.09 1.58 5.03 -51.93 -0.26 1.32 16 44 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -29.84 336.10 -9.45 -39.29 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.92 Total: 5.84 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.66 Total: -18.49 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.99 Total: -48.48 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -3.94 Total: 16.77 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.84 -9.45 -39.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887134630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.414 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds