Wall clock time and date at job start Tue Mar 31 2020 09:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.48742 * 2 1 4 4 C 1.53047 * 109.50776 * 239.95298 * 2 1 3 5 5 N 1.46958 * 109.36566 * 181.61989 * 4 2 1 6 6 C 1.39169 * 110.99764 * 183.18249 * 5 4 2 7 7 C 1.39477 * 120.86814 * 359.72722 * 6 5 4 8 8 C 1.37892 * 119.06599 * 179.72796 * 7 6 5 9 9 N 1.31994 * 120.84480 * 0.55152 * 8 7 6 10 10 C 1.32004 * 121.90669 * 359.71949 * 9 8 7 11 11 C 1.37891 * 120.84422 * 359.97438 * 10 9 8 12 12 C 1.46999 * 110.88957 * 59.31677 * 5 4 2 13 13 C 1.53048 * 109.34263 * 300.69463 * 12 5 4 14 14 N 1.46949 * 109.48743 * 120.04559 * 2 1 3 15 15 C 1.46898 * 111.00233 * 303.17699 * 14 2 1 16 16 C 1.53004 * 109.47111 * 159.40753 * 15 14 2 17 17 C 1.50692 * 115.55055 * 155.48030 * 16 15 14 18 18 H 1.08006 * 120.00272 * 144.92312 * 17 16 15 19 19 C 1.37879 * 120.00353 * 324.92105 * 17 16 15 20 20 N 1.31510 * 120.00406 * 159.84870 * 19 17 16 21 21 Si 1.86803 * 119.99504 * 339.84817 * 19 17 16 22 22 H 1.48503 * 109.46975 * 95.57193 * 21 19 17 23 23 H 1.48493 * 109.47208 * 215.57053 * 21 19 17 24 24 H 1.48501 * 109.47564 * 335.57661 * 21 19 17 25 25 C 1.52997 * 117.49682 * 9.76458 * 16 15 14 26 26 C 1.52998 * 60.00192 * 252.51404 * 25 16 15 27 27 H 1.09001 * 109.47130 * 299.95717 * 1 2 3 28 28 H 1.09000 * 109.46978 * 59.94943 * 1 2 3 29 29 H 1.08993 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.48847 * 301.58641 * 4 2 1 31 31 H 1.08999 * 109.49410 * 61.62773 * 4 2 1 32 32 H 1.07999 * 120.46166 * 359.96704 * 7 6 5 33 33 H 1.07997 * 119.57972 * 180.29416 * 8 7 6 34 34 H 1.07998 * 119.57631 * 180.02562 * 10 9 8 35 35 H 1.07997 * 120.46597 * 179.97438 * 11 10 9 36 36 H 1.09002 * 109.51556 * 180.72035 * 12 5 4 37 37 H 1.08999 * 109.48380 * 60.64615 * 12 5 4 38 38 H 1.08999 * 109.49003 * 298.41338 * 13 12 5 39 39 H 1.09000 * 109.48879 * 178.37203 * 13 12 5 40 40 H 1.09001 * 109.47215 * 279.40186 * 15 14 2 41 41 H 1.09000 * 109.46938 * 39.40395 * 15 14 2 42 42 H 0.96997 * 120.00240 * 180.02562 * 20 19 17 43 43 H 1.08998 * 117.50375 * 0.02562 * 25 16 15 44 44 H 1.08999 * 117.49558 * 145.02588 * 25 16 15 45 45 H 1.08995 * 117.50315 * 252.51162 * 26 25 16 46 46 H 1.09006 * 117.49666 * 107.49299 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7223 -1.2487 5 7 3.5102 -0.7545 -1.2261 6 6 4.0140 -1.3417 -2.3829 7 6 3.1573 -1.8145 -3.3769 8 6 3.6968 -2.3847 -4.5106 9 7 5.0040 -2.4953 -4.6561 10 6 5.8473 -2.0651 -3.7361 11 6 5.3886 -1.4773 -2.5762 12 6 4.0008 -1.4484 -0.0267 13 6 3.4893 -0.7258 1.2218 14 7 2.0203 -0.6936 1.1992 15 6 1.4884 -0.0739 2.4202 16 6 1.5737 -1.0714 3.5772 17 6 1.6258 -0.4650 4.9557 18 1 1.1424 -0.9629 5.7834 19 6 2.2905 0.7255 5.1606 20 7 2.0218 1.4546 6.2216 21 14 3.5728 1.3027 3.9309 22 1 2.9460 2.2416 2.9661 23 1 4.6729 1.9935 4.6504 24 1 4.1187 0.1319 3.1985 25 6 2.3632 -2.3606 3.3417 26 6 0.8357 -2.4022 3.4183 27 1 -0.3633 0.5132 0.8904 28 1 -0.3633 0.5146 -0.8895 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6552 -1.7416 -1.2627 31 1 1.7023 -0.1931 -2.1394 32 1 2.0867 -1.7316 -3.2619 33 1 3.0413 -2.7492 -5.2877 34 1 6.9100 -2.1743 -3.8943 35 1 6.0840 -1.1280 -1.8273 36 1 5.0909 -1.4480 -0.0261 37 1 3.6372 -2.4759 -0.0268 38 1 3.8752 0.2935 1.2358 39 1 3.8278 -1.2550 2.1126 40 1 2.0735 0.8135 2.6618 41 1 0.4480 0.2093 2.2604 42 1 2.4892 2.2922 6.3655 43 1 2.8222 -2.4980 2.3626 44 1 2.9206 -2.7703 4.1839 45 1 0.3882 -2.8393 4.3109 46 1 0.2895 -2.5671 2.4895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887134630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:37 Heat of formation + Delta-G solvation = 92.962543 kcal Electronic energy + Delta-G solvation = -25652.678084 eV Core-core repulsion = 22350.764465 eV Total energy + Delta-G solvation = -3301.913619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86077 -40.49025 -38.56527 -36.35488 -34.40320 -33.63008 -32.19578 -31.97140 -29.47993 -28.33556 -27.60741 -25.38613 -24.66510 -23.66353 -22.77166 -22.35085 -20.96190 -20.75995 -18.67737 -18.36692 -17.41222 -17.30707 -16.75541 -16.61925 -16.21058 -15.98414 -15.89209 -15.38524 -15.08496 -14.83546 -14.60818 -14.45117 -14.42961 -14.23479 -13.69872 -13.28776 -13.14154 -12.85503 -12.79799 -12.64732 -12.49683 -12.29092 -12.06218 -11.85634 -11.74014 -11.47343 -11.40474 -11.06337 -10.94985 -10.53354 -10.42736 -10.17194 -10.09178 -9.29495 -9.20411 -8.38670 -6.29610 0.24775 0.31229 1.20995 1.33125 1.43059 2.27817 2.50526 2.72905 2.91518 2.94973 3.53488 3.64207 3.65161 3.75805 3.86686 4.07176 4.08435 4.15970 4.18095 4.27884 4.31214 4.32888 4.40110 4.50164 4.52710 4.61628 4.65237 4.70757 4.74859 4.85449 4.88430 4.90903 4.92058 4.99448 5.05744 5.07998 5.09395 5.24225 5.31090 5.48839 5.62292 5.66394 5.69401 5.79249 5.96979 6.12919 6.13863 6.36241 6.70792 7.11280 7.27583 8.76412 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.004299 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.598597 B = 6511.076742 C = 6855.858201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 H 0.029 0.971 4 C 0.069 3.931 5 N -0.500 5.500 6 C 0.148 3.852 7 C -0.228 4.228 8 C 0.115 3.885 9 N -0.534 5.534 10 C 0.113 3.887 11 C -0.204 4.204 12 C 0.073 3.927 13 C 0.036 3.964 14 N -0.522 5.522 15 C 0.083 3.917 16 C -0.008 4.008 17 C -0.495 4.495 18 H 0.030 0.970 19 C 0.024 3.976 20 N -0.936 5.936 21 Si 0.936 3.064 22 H -0.287 1.287 23 H -0.312 1.312 24 H -0.209 1.209 25 C -0.191 4.191 26 C -0.166 4.166 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.153 0.847 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.023 0.977 39 H 0.100 0.900 40 H 0.015 0.985 41 H 0.082 0.918 42 H 0.265 0.735 43 H 0.111 0.889 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -6.138 -22.267 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 H 0.047 0.953 4 C -0.058 4.058 5 N -0.214 5.214 6 C 0.041 3.959 7 C -0.251 4.251 8 C -0.041 4.041 9 N -0.245 5.245 10 C -0.043 4.043 11 C -0.227 4.227 12 C -0.052 4.052 13 C -0.092 4.092 14 N -0.247 5.247 15 C -0.044 4.044 16 C -0.009 4.009 17 C -0.533 4.533 18 H 0.049 0.951 19 C -0.175 4.175 20 N -0.574 5.574 21 Si 0.765 3.235 22 H -0.215 1.215 23 H -0.241 1.241 24 H -0.131 1.131 25 C -0.228 4.228 26 C -0.203 4.203 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.171 0.829 33 H 0.194 0.806 34 H 0.193 0.807 35 H 0.162 0.838 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.118 0.882 40 H 0.033 0.967 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.653 -6.353 -22.824 23.972 hybrid contribution 0.123 1.460 1.474 2.079 sum 3.776 -4.893 -21.351 22.227 Atomic orbital electron populations 1.21873 0.92237 1.03386 1.02534 1.21796 0.96855 0.95217 0.89571 0.95264 1.22399 0.84400 1.01127 0.97861 1.58949 1.10808 1.50050 1.01583 1.19447 0.94237 0.90423 0.91807 1.22477 1.01860 1.03688 0.97044 1.22992 0.91485 0.93508 0.96113 1.67766 1.04867 1.20045 1.31817 1.22959 1.00713 0.92145 0.88439 1.21986 0.94387 1.05044 1.01248 1.22294 1.00879 0.95829 0.86235 1.22815 0.88299 0.99191 0.98879 1.62221 1.07632 1.53209 1.01595 1.21864 0.99799 0.94242 0.88464 1.19117 1.02926 0.86985 0.91908 1.20610 1.33550 1.06048 0.93085 0.95140 1.25790 0.98404 0.95842 0.97453 1.70138 1.41650 1.13449 1.32192 0.86340 0.78677 0.79957 0.78571 1.21546 1.24084 1.13105 1.23267 0.93528 1.04664 1.01358 1.22649 0.94658 1.02191 1.00785 0.93069 0.89741 0.90947 0.91545 0.87917 0.82903 0.80602 0.80654 0.83842 0.88233 0.92237 0.95880 0.88180 0.96748 0.89945 0.92558 0.87119 0.91945 0.92009 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.95 71.98 0.64 -2.51 16 2 C 0.07 1.92 2.56 44.92 0.12 2.03 16 3 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 4 C 0.07 1.40 3.59 86.31 0.31 1.71 16 5 N -0.50 -11.23 4.75 -694.06 -3.30 -14.53 16 6 C 0.15 3.02 5.65 38.57 0.22 3.24 16 7 C -0.23 -4.01 8.88 22.49 0.20 -3.81 16 8 C 0.12 2.02 11.17 84.59 0.94 2.97 16 9 N -0.53 -11.08 10.36 -196.16 -2.03 -13.12 16 10 C 0.11 2.06 11.17 84.58 0.94 3.01 16 11 C -0.20 -3.87 9.28 22.49 0.21 -3.66 16 12 C 0.07 1.72 5.39 86.30 0.47 2.18 16 13 C 0.04 1.10 2.98 86.31 0.26 1.36 16 14 N -0.52 -16.28 3.59 -870.49 -3.13 -19.40 16 15 C 0.08 3.29 4.43 86.30 0.38 3.67 16 16 C -0.01 -0.36 1.73 -52.93 -0.09 -0.45 16 17 C -0.50 -27.98 9.51 25.60 0.24 -27.74 16 18 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 19 C 0.02 1.37 5.35 84.66 0.45 1.82 16 20 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 21 Si 0.94 43.97 23.20 68.60 1.59 45.57 16 22 H -0.29 -13.39 6.64 99.48 0.66 -12.73 16 23 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 24 H -0.21 -8.54 3.89 99.48 0.39 -8.16 16 25 C -0.19 -7.39 8.25 30.59 0.25 -7.14 16 26 C -0.17 -6.48 9.86 30.59 0.30 -6.17 16 27 H 0.05 1.33 5.96 -2.39 -0.01 1.31 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.29 7.61 -2.39 -0.02 1.27 16 31 H 0.10 1.72 7.22 -2.39 -0.02 1.71 16 32 H 0.15 2.11 5.97 -2.91 -0.02 2.09 16 33 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.14 2.38 7.27 -2.91 -0.02 2.36 16 36 H 0.10 2.04 6.90 -2.39 -0.02 2.02 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.02 0.78 6.69 -2.39 -0.02 0.76 16 39 H 0.10 3.33 3.99 -2.39 -0.01 3.32 16 40 H 0.02 0.66 2.37 -2.39 -0.01 0.65 16 41 H 0.08 3.18 5.36 -2.39 -0.01 3.17 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 43 H 0.11 3.75 5.03 -2.39 -0.01 3.74 16 44 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 Total: -1.00 -67.20 336.10 -0.10 -67.30 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.62 Total: 21.50 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 5.85 Total: -29.50 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -8.16 Total: -104.87 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.59 Total: 45.57 kcal Total: -67.20 -0.10 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887134630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.262 kcal (2) G-P(sol) polarization free energy of solvation -67.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds