Wall clock time and date at job start Tue Mar 31 2020 09:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38682 * 119.27534 * 2 1 4 4 C 1.38011 * 119.62298 * 180.02562 * 3 2 1 5 5 C 1.40996 * 118.28624 * 359.97438 * 4 3 2 6 6 C 1.41017 * 120.70776 * 180.02562 * 5 4 3 7 7 H 1.08005 * 119.99699 * 155.53299 * 6 5 4 8 8 C 1.39946 * 120.00067 * 335.54221 * 6 5 4 9 9 N 1.30862 * 120.00130 * 342.45628 * 8 6 5 10 10 Si 1.86800 * 120.00013 * 162.45978 * 8 6 5 11 11 H 1.48510 * 109.47165 * 60.00058 * 10 8 6 12 12 H 1.48499 * 109.47273 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47384 * 299.99776 * 10 8 6 14 14 C 1.41706 * 118.58898 * 0.02562 * 5 4 3 15 15 N 1.38090 * 119.90942 * 179.97438 * 14 5 4 16 16 C 1.47564 * 111.00335 * 124.01716 * 15 14 5 17 17 C 1.55210 * 106.99384 * 121.59002 * 16 15 14 18 18 H 1.08999 * 112.29808 * 144.40417 * 17 16 15 19 19 C 1.53107 * 107.19107 * 267.85484 * 17 16 15 20 20 C 1.51625 * 111.21906 * 160.55998 * 19 17 16 21 21 C 1.53336 * 108.53625 * 300.65874 * 20 19 17 22 22 N 1.46654 * 108.18584 * 62.87887 * 21 20 19 23 23 C 1.46901 * 110.99806 * 173.54952 * 22 21 20 24 24 C 1.44558 * 113.68669 * 299.53775 * 22 21 20 25 25 H 1.09008 * 108.77568 * 174.95193 * 24 22 21 26 26 C 1.48192 * 110.99822 * 244.85906 * 15 14 5 27 27 N 1.31968 * 119.27492 * 180.27498 * 2 1 3 28 28 H 1.08998 * 109.47051 * 89.99702 * 1 2 3 29 29 H 1.09002 * 109.46844 * 209.99744 * 1 2 3 30 30 H 1.09000 * 109.46848 * 330.00053 * 1 2 3 31 31 H 1.07995 * 120.18495 * 0.04660 * 3 2 1 32 32 H 1.08001 * 120.85468 * 179.97438 * 4 3 2 33 33 H 0.96999 * 120.00096 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.92842 * 2.25084 * 16 15 14 35 35 H 1.08999 * 109.92469 * 240.92243 * 16 15 14 36 36 H 1.08989 * 109.24756 * 280.95874 * 19 17 16 37 37 H 1.09000 * 109.24740 * 40.37927 * 19 17 16 38 38 H 1.09003 * 109.86359 * 180.71072 * 20 19 17 39 39 H 1.09003 * 109.32830 * 60.28560 * 20 19 17 40 40 H 1.09000 * 109.71824 * 303.20720 * 21 20 19 41 41 H 1.09003 * 109.72492 * 182.55551 * 21 20 19 42 42 H 1.09000 * 109.47014 * 187.46712 * 23 22 21 43 43 H 1.09002 * 109.47553 * 307.46960 * 23 22 21 44 44 H 1.09000 * 109.46969 * 67.47549 * 23 22 21 45 45 H 1.08998 * 110.49252 * 95.71330 * 26 15 14 46 46 H 1.09000 * 110.49489 * 333.05335 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2097 0.0000 4 6 3.5652 1.2181 -0.0005 5 6 4.2409 -0.0195 -0.0005 6 6 5.6502 -0.0705 -0.0005 7 1 6.1590 -0.9408 0.3869 8 6 6.3894 1.0067 -0.5023 9 7 5.8125 1.8943 -1.2716 10 14 8.1996 1.1774 -0.0741 11 1 8.9370 -0.0187 -0.5549 12 1 8.7501 2.3927 -0.7260 13 1 8.3511 1.2934 1.3986 14 6 3.4738 -1.2109 -0.0005 15 7 4.1074 -2.4378 -0.0010 16 6 3.6657 -3.2617 1.1408 17 6 3.0701 -4.5690 0.5534 18 1 3.2806 -5.4368 1.1785 19 6 1.5666 -4.3410 0.3750 20 6 0.9733 -5.3350 -0.6044 21 6 1.6823 -5.1719 -1.9542 22 7 3.0992 -5.5026 -1.7698 23 6 3.8085 -5.5151 -3.0562 24 6 3.7741 -4.6535 -0.8142 25 1 4.7898 -5.0230 -0.6726 26 6 3.8284 -3.1791 -1.2535 27 7 2.1523 -1.1511 -0.0055 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6364 2.1398 0.0008 32 1 4.1135 2.1486 -0.0010 33 1 6.3248 2.6411 -1.6191 34 1 2.9040 -2.7293 1.7104 35 1 4.5163 -3.4958 1.7809 36 1 1.0696 -4.4518 1.3386 37 1 1.3984 -3.3321 -0.0017 38 1 -0.0933 -5.1451 -0.7243 39 1 1.1263 -6.3467 -0.2289 40 1 1.5868 -4.1419 -2.2977 41 1 1.2393 -5.8470 -2.6864 42 1 4.8211 -5.8907 -2.9091 43 1 3.2794 -6.1614 -3.7566 44 1 3.8513 -4.5025 -3.4573 45 1 4.6308 -3.0251 -1.9749 46 1 2.8713 -2.8707 -1.6743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157271753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:07 Heat of formation + Delta-G solvation = 41.838732 kcal Electronic energy + Delta-G solvation = -26080.629087 eV Core-core repulsion = 22776.498573 eV Total energy + Delta-G solvation = -3304.130513 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.35690 -38.37113 -35.78309 -34.23929 -33.35562 -31.52524 -30.71820 -28.95811 -27.82366 -27.62609 -26.04820 -24.41488 -23.22727 -22.10335 -21.39790 -20.57004 -19.80548 -18.30412 -17.28609 -16.14817 -16.00800 -15.54888 -14.76088 -14.40946 -14.30387 -14.16590 -13.92028 -13.66055 -13.22537 -12.86144 -12.80962 -12.55371 -12.23072 -12.15166 -11.87139 -11.79245 -11.68420 -11.45922 -11.38201 -11.16360 -11.08740 -10.95397 -10.90314 -10.80500 -10.52748 -10.27762 -10.00088 -9.83738 -9.78094 -9.31422 -8.32609 -8.11639 -8.01189 -7.50943 -7.36968 -6.84038 -4.38706 2.57350 2.87723 3.02678 3.06280 3.19036 3.86957 4.07289 4.53693 4.85321 4.89825 5.11075 5.19909 5.29818 5.41111 5.49335 5.62207 5.63822 5.69911 5.73024 5.82825 5.88766 6.00292 6.05465 6.05732 6.06861 6.16936 6.23278 6.29014 6.36135 6.40290 6.41947 6.45952 6.52734 6.54654 6.65235 6.85491 6.95644 6.97744 7.12358 7.16099 7.30719 7.40360 7.60296 7.70988 7.75264 8.01112 8.30949 8.60226 8.69795 8.94470 9.58879 10.05261 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.005812 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.536890 B = 4816.141874 C = 6006.976565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.013 4.013 3 C -0.145 4.145 4 C -0.137 4.137 5 C 0.092 3.908 6 C -0.416 4.416 7 H 0.093 0.907 8 C 0.070 3.930 9 N -0.790 5.790 10 Si 0.912 3.088 11 H -0.263 1.263 12 H -0.279 1.279 13 H -0.262 1.262 14 C 0.151 3.849 15 N -0.440 5.440 16 C 0.054 3.946 17 C -0.094 4.094 18 H 0.080 0.920 19 C -0.129 4.129 20 C -0.111 4.111 21 C 0.058 3.942 22 N -0.539 5.539 23 C 0.027 3.973 24 C 0.087 3.913 25 H 0.084 0.916 26 C 0.029 3.971 27 N -0.482 5.482 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.283 0.717 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.054 -8.501 -0.221 9.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.153 4.153 3 C -0.165 4.165 4 C -0.163 4.163 5 C 0.086 3.914 6 C -0.445 4.445 7 H 0.111 0.889 8 C -0.149 4.149 9 N -0.415 5.415 10 Si 0.737 3.263 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.187 1.187 14 C -0.082 4.082 15 N -0.161 5.161 16 C -0.074 4.074 17 C -0.114 4.114 18 H 0.099 0.901 19 C -0.166 4.166 20 C -0.149 4.149 21 C -0.070 4.070 22 N -0.262 5.262 23 C -0.121 4.121 24 C -0.022 4.022 25 H 0.102 0.898 26 C -0.100 4.100 27 N -0.194 5.194 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.920 -9.391 -0.156 10.178 hybrid contribution 0.469 1.771 -0.389 1.873 sum -3.451 -7.620 -0.545 8.383 Atomic orbital electron populations 1.20255 0.91957 1.00556 1.00139 1.19978 0.94352 0.88385 1.12567 1.21396 0.95327 0.96883 1.02933 1.21621 0.92375 0.98697 1.03610 1.18072 0.94143 0.89841 0.89393 1.19550 0.90958 1.01442 1.32524 0.88899 1.26086 1.01507 0.94576 0.92683 1.69822 1.38972 1.10729 1.21936 0.86286 0.81486 0.78539 0.80030 1.18733 1.20432 1.18698 1.19441 0.86308 0.90213 1.12220 1.61054 1.53310 1.00711 1.01042 1.23098 0.98276 0.91936 0.94129 1.22298 0.95439 0.98011 0.95613 0.90149 1.21555 0.94286 1.01857 0.98921 1.21323 0.98456 0.99997 0.95139 1.22082 0.87999 0.99264 0.97658 1.60650 1.02309 1.53354 1.09887 1.22303 0.99084 1.00233 0.90461 1.21873 0.97709 0.90781 0.91887 0.89839 1.23401 1.00148 0.92927 0.93525 1.66642 1.11001 1.29947 1.11802 0.93560 0.92951 0.93097 0.88606 0.85610 0.90627 0.92038 0.91636 0.92881 0.88621 0.92050 0.91843 0.94373 0.91318 0.91478 0.91868 0.95235 0.91339 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.15 36.01 0.37 -0.92 16 2 C -0.01 -0.28 6.79 -82.37 -0.56 -0.84 16 3 C -0.14 -3.34 9.69 -39.50 -0.38 -3.73 16 4 C -0.14 -3.47 8.80 -38.62 -0.34 -3.81 16 5 C 0.09 2.39 5.60 -106.48 -0.60 1.79 16 6 C -0.42 -10.68 8.70 -37.89 -0.33 -11.01 16 7 H 0.09 2.37 7.60 -52.48 -0.40 1.97 16 8 C 0.07 1.70 5.17 -17.33 -0.09 1.61 16 9 N -0.79 -19.70 10.98 55.55 0.61 -19.09 16 10 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 11 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 12 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 13 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 14 C 0.15 3.65 5.18 -155.02 -0.80 2.84 16 15 N -0.44 -9.48 4.36 -169.13 -0.74 -10.22 16 16 C 0.05 1.01 6.00 -2.29 -0.01 0.99 16 17 C -0.09 -1.51 3.65 -88.85 -0.32 -1.83 16 18 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.13 -2.03 4.68 -27.37 -0.13 -2.16 16 20 C -0.11 -1.52 6.08 -27.25 -0.17 -1.69 16 21 C 0.06 0.81 5.34 -3.78 -0.02 0.79 16 22 N -0.54 -7.86 4.70 -235.42 -1.11 -8.97 16 23 C 0.03 0.35 9.38 60.07 0.56 0.91 16 24 C 0.09 1.42 2.60 -67.93 -0.18 1.24 16 25 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 26 C 0.03 0.57 4.70 -2.62 -0.01 0.56 16 27 N -0.48 -11.18 7.15 -8.11 -0.06 -11.24 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 32 H 0.13 3.25 6.26 -52.49 -0.33 2.92 16 33 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 34 H 0.06 1.25 6.82 -51.93 -0.35 0.90 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.80 8.14 -51.94 -0.42 0.37 16 37 H 0.10 1.80 5.41 -51.93 -0.28 1.52 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.62 6.59 -51.93 -0.34 0.28 16 41 H 0.07 0.84 8.05 -51.93 -0.42 0.43 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 44 H 0.03 0.41 7.11 -51.93 -0.37 0.04 16 45 H 0.07 1.39 7.84 -51.93 -0.41 0.98 16 46 H 0.05 1.12 5.37 -51.93 -0.28 0.84 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -26.56 347.39 -11.48 -38.04 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.38 Total: 8.25 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -3.01 Total: -15.23 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -1.29 Total: -49.51 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.56 -11.48 -38.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157271753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.880 kcal (2) G-P(sol) polarization free energy of solvation -26.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds