Wall clock time and date at job start Tue Mar 31 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35896 * 117.00641 * 2 1 4 4 C 1.38753 * 120.08947 * 0.02562 * 3 2 1 5 5 C 1.38004 * 119.87852 * 179.97438 * 4 3 2 6 6 C 1.38546 * 120.29032 * 0.02562 * 5 4 3 7 7 C 1.38262 * 119.93800 * 359.97438 * 6 5 4 8 8 C 1.38417 * 119.90456 * 359.97438 * 7 6 5 9 9 C 1.51382 * 109.75645 * 179.97438 * 7 6 5 10 10 C 1.54339 * 105.17096 * 17.20257 * 9 7 6 11 11 H 1.08997 * 110.81873 * 215.40359 * 10 9 7 12 12 N 1.46896 * 110.99072 * 91.93647 * 10 9 7 13 13 C 1.46852 * 110.99839 * 302.02898 * 12 10 9 14 14 C 1.53034 * 109.52186 * 174.16370 * 13 12 10 15 15 C 1.53121 * 109.28144 * 59.18139 * 14 13 12 16 16 C 1.53120 * 109.15875 * 302.34528 * 15 14 13 17 17 H 1.09005 * 109.50354 * 297.71482 * 16 15 14 18 18 C 1.50701 * 109.53771 * 177.61478 * 16 15 14 19 19 H 1.08003 * 119.99743 * 275.35114 * 18 16 15 20 20 C 1.37879 * 120.00024 * 95.35184 * 18 16 15 21 21 N 1.31519 * 119.99848 * 185.75317 * 20 18 16 22 22 Si 1.86793 * 120.00110 * 5.74775 * 20 18 16 23 23 H 1.48504 * 109.47352 * 84.78233 * 22 20 18 24 24 H 1.48500 * 109.47434 * 204.78457 * 22 20 18 25 25 H 1.48504 * 109.47104 * 324.78003 * 22 20 18 26 26 C 1.46851 * 111.00170 * 177.82440 * 12 10 9 27 27 C 1.51392 * 130.32442 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.46824 * 300.00140 * 1 2 3 29 29 H 1.09003 * 109.46949 * 59.99565 * 1 2 3 30 30 H 1.08996 * 109.47807 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.06290 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.85881 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.90972 * 180.02562 * 8 7 6 34 34 H 1.08996 * 110.30114 * 258.27920 * 9 7 6 35 35 H 1.09004 * 110.29901 * 136.12584 * 9 7 6 36 36 H 1.09003 * 109.46576 * 294.17674 * 13 12 10 37 37 H 1.08991 * 109.46362 * 54.14849 * 13 12 10 38 38 H 1.08999 * 109.50377 * 299.23862 * 14 13 12 39 39 H 1.09004 * 109.53881 * 179.14082 * 14 13 12 40 40 H 1.09005 * 109.52425 * 182.44380 * 15 14 13 41 41 H 1.09001 * 109.52654 * 62.25042 * 15 14 13 42 42 H 0.97001 * 119.99771 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.45972 * 305.85422 * 26 12 10 44 44 H 1.08996 * 109.46471 * 65.82968 * 26 12 10 45 45 H 1.09000 * 110.30230 * 43.89930 * 27 6 5 46 46 H 1.08995 * 110.38463 * 281.78985 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2923 2.3757 0.0005 5 6 1.9235 3.6030 0.0011 6 6 3.3070 3.6772 0.0005 7 6 4.0602 2.5178 0.0000 8 6 3.4300 1.2854 0.0005 9 6 5.5337 2.8649 -0.0012 10 6 5.6010 4.3426 0.4393 11 1 6.4051 4.8650 -0.0789 12 7 5.7640 4.4508 1.8951 13 6 4.6644 3.7788 2.5992 14 6 4.9413 3.7852 4.1043 15 6 5.0733 5.2319 4.5881 16 6 6.1929 5.9234 3.8052 17 1 7.1394 5.4198 4.0022 18 6 6.2913 7.3649 4.2334 19 1 5.6508 8.1075 3.7809 20 6 7.1989 7.7358 5.2028 21 7 7.2079 8.9698 5.6576 22 14 8.4157 6.4855 5.8702 23 1 9.6017 6.4240 4.9786 24 1 8.8423 6.8891 7.2341 25 1 7.7705 5.1492 5.9286 26 6 5.8797 5.8551 2.3088 27 6 4.2234 4.8823 0.0004 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2137 2.3222 0.0005 32 1 1.3365 4.5095 0.0019 33 1 4.0183 0.3797 0.0005 34 1 5.9487 2.7494 -1.0024 35 1 6.0713 2.2343 0.7070 36 1 3.7304 4.3042 2.3996 37 1 4.5840 2.7498 2.2491 38 1 5.8680 3.2480 4.3061 39 1 4.1179 3.2999 4.6285 40 1 5.3136 5.2401 5.6513 41 1 4.1336 5.7588 4.4220 42 1 7.8462 9.2306 6.3398 43 1 6.6821 6.3341 1.7476 44 1 4.9401 6.3707 2.1107 45 1 3.8663 5.6291 0.7096 46 1 4.2866 5.3111 -0.9997 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168280708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:10 Heat of formation + Delta-G solvation = -31.568355 kcal Electronic energy + Delta-G solvation = -25175.062821 eV Core-core repulsion = 21835.456387 eV Total energy + Delta-G solvation = -3339.606435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88929 -40.36147 -38.70492 -36.23368 -34.58305 -32.81067 -32.27677 -31.94403 -29.04837 -28.87935 -27.23069 -26.79148 -24.89377 -23.46132 -22.73123 -21.72664 -21.13928 -20.20058 -18.92994 -18.54828 -17.50420 -17.05477 -16.61246 -16.43912 -16.14028 -15.86448 -15.54091 -15.33178 -14.94415 -14.58735 -14.36711 -14.21402 -14.17326 -14.13622 -13.56812 -13.26531 -12.97855 -12.91215 -12.83076 -12.71538 -12.59086 -12.37631 -12.27819 -12.02823 -11.79440 -11.74812 -11.66561 -11.54529 -11.23288 -11.03538 -10.80612 -10.60344 -9.72021 -9.18655 -8.88089 -8.27552 -6.30511 0.36762 0.45849 1.37951 1.38741 1.50811 2.34048 2.37887 2.74991 3.00404 3.13169 3.55803 3.63577 3.93605 4.06071 4.14898 4.16496 4.22509 4.25033 4.34601 4.38345 4.39828 4.43662 4.51969 4.56043 4.69314 4.73587 4.78562 4.79067 4.83030 4.86481 4.95137 4.98067 5.02487 5.10731 5.16228 5.19208 5.23805 5.28758 5.35556 5.42094 5.57872 5.68483 5.72792 5.76548 5.79422 6.19603 6.36200 6.41188 6.47003 6.77768 7.35952 8.89470 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.026705 B = 0.003568 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.227165 B = 7845.410635 C = 8002.034872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.116 3.884 4 C -0.209 4.209 5 C -0.079 4.079 6 C -0.137 4.137 7 C -0.057 4.057 8 C -0.153 4.153 9 C -0.069 4.069 10 C 0.080 3.920 11 H 0.106 0.894 12 N -0.531 5.531 13 C 0.070 3.930 14 C -0.116 4.116 15 C -0.108 4.108 16 C 0.020 3.980 17 H 0.035 0.965 18 C -0.513 4.513 19 H 0.029 0.971 20 C 0.014 3.986 21 N -0.951 5.951 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.248 1.248 26 C 0.084 3.916 27 C -0.109 4.109 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.023 0.977 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.265 0.735 43 H 0.063 0.937 44 H 0.016 0.984 45 H 0.057 0.943 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 -18.842 -14.349 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.071 3.929 4 C -0.227 4.227 5 C -0.097 4.097 6 C -0.137 4.137 7 C -0.057 4.057 8 C -0.172 4.172 9 C -0.106 4.106 10 C -0.029 4.029 11 H 0.124 0.876 12 N -0.254 5.254 13 C -0.058 4.058 14 C -0.154 4.154 15 C -0.147 4.147 16 C 0.000 4.000 17 H 0.053 0.947 18 C -0.551 4.551 19 H 0.048 0.952 20 C -0.183 4.183 21 N -0.592 5.592 22 Si 0.768 3.232 23 H -0.191 1.191 24 H -0.217 1.217 25 H -0.171 1.171 26 C -0.044 4.044 27 C -0.148 4.148 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.042 0.958 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.034 0.966 45 H 0.076 0.924 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.524 -19.158 -14.101 26.012 hybrid contribution -0.608 0.968 0.502 1.249 sum -11.132 -18.190 -13.599 25.292 Atomic orbital electron populations 1.23317 0.76560 1.05496 1.02114 1.86025 1.23331 1.26678 1.88845 1.18928 0.92253 0.84637 0.97109 1.21278 1.00872 0.91530 1.09051 1.20606 0.93283 0.97860 0.97975 1.20568 0.93743 0.95790 1.03623 1.20465 0.96688 0.92038 0.96508 1.19911 0.91619 0.97878 1.07770 1.21158 0.91107 0.95158 1.03212 1.22535 0.96031 0.96465 0.87836 0.87587 1.62194 1.43639 1.14733 1.04853 1.22023 0.91521 0.98787 0.93457 1.21663 1.01616 0.96438 0.95651 1.21720 0.98962 0.95063 0.98913 1.19102 0.95199 0.93341 0.92321 0.94682 1.21243 1.19602 0.93505 1.20770 0.95226 1.25903 0.99218 0.96925 0.96285 1.70065 1.38232 1.20106 1.30769 0.85792 0.79657 0.80470 0.77329 1.19107 1.21717 1.17148 1.21911 0.98655 0.87066 0.96746 1.21661 0.95108 0.95612 1.02422 0.92090 0.91719 0.86288 0.83464 0.85258 0.84794 0.87359 0.89508 0.95832 0.90065 0.91972 0.91043 0.94456 0.94364 0.92619 0.91845 0.96554 0.92408 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.76 10.50 -92.38 -0.97 -7.73 16 3 C 0.12 2.57 6.68 22.48 0.15 2.73 16 4 C -0.21 -4.27 9.04 22.34 0.20 -4.06 16 5 C -0.08 -1.78 10.03 22.29 0.22 -1.56 16 6 C -0.14 -3.34 4.62 -19.56 -0.09 -3.43 16 7 C -0.06 -1.32 4.33 -19.60 -0.08 -1.40 16 8 C -0.15 -3.50 9.98 22.40 0.22 -3.27 16 9 C -0.07 -1.48 5.82 30.52 0.18 -1.30 16 10 C 0.08 2.06 3.32 45.82 0.15 2.21 16 11 H 0.11 2.53 8.11 -2.39 -0.02 2.51 16 12 N -0.53 -17.31 4.67 -865.85 -4.04 -21.36 16 13 C 0.07 2.21 4.03 86.32 0.35 2.56 16 14 C -0.12 -3.97 6.09 30.65 0.19 -3.78 16 15 C -0.11 -4.61 5.27 30.67 0.16 -4.45 16 16 C 0.02 0.92 1.94 -11.49 -0.02 0.90 16 17 H 0.04 1.67 5.25 -2.38 -0.01 1.66 16 18 C -0.51 -29.34 8.86 25.60 0.23 -29.11 16 19 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 20 C 0.01 0.79 5.47 84.65 0.46 1.25 16 21 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 22 Si 0.94 45.14 27.01 68.60 1.85 46.99 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.25 -11.15 6.78 99.48 0.67 -10.48 16 26 C 0.08 3.35 4.45 86.32 0.38 3.73 16 27 C -0.11 -2.74 5.66 30.52 0.17 -2.57 16 28 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 29 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 30 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.15 2.23 6.31 -2.91 -0.02 2.22 16 32 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 1.91 7.85 -2.38 -0.02 1.89 16 36 H 0.02 0.79 6.36 -2.39 -0.02 0.77 16 37 H 0.08 2.36 5.59 -2.39 -0.01 2.35 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.06 2.55 8.10 -2.38 -0.02 2.53 16 44 H 0.02 0.68 6.65 -2.39 -0.02 0.66 16 45 H 0.06 1.70 5.93 -2.39 -0.01 1.69 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -67.46 347.51 2.05 -65.41 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.93 Total: 16.58 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 3.99 Total: -40.24 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -3.75 Total: -81.00 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.97 Total: -7.73 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.85 Total: 46.99 kcal Total: -67.46 2.05 -65.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168280708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.839 kcal (2) G-P(sol) polarization free energy of solvation -67.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds