Wall clock time and date at job start Tue Mar 31 2020 09:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46973 * 2 1 4 4 H 1.08995 * 109.47773 * 304.25535 * 3 2 1 5 5 C 1.50704 * 109.47026 * 184.25058 * 3 2 1 6 6 H 1.08001 * 119.99876 * 240.00665 * 5 3 2 7 7 C 1.37873 * 119.99774 * 60.00524 * 5 3 2 8 8 N 1.31509 * 120.00259 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00197 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47560 * 89.99659 * 9 7 5 11 11 H 1.48494 * 109.47387 * 210.00303 * 9 7 5 12 12 H 1.48505 * 109.46795 * 329.99728 * 9 7 5 13 13 N 1.46898 * 109.46991 * 64.25739 * 3 2 1 14 14 C 1.46893 * 111.00374 * 205.87903 * 13 3 2 15 15 C 1.50699 * 109.47558 * 174.79565 * 14 13 3 16 16 N 1.30107 * 124.94818 * 269.69515 * 15 14 13 17 17 C 1.35786 * 109.64481 * 179.89265 * 16 15 14 18 18 C 1.39743 * 133.60325 * 180.13456 * 17 16 15 19 19 C 1.36603 * 119.88454 * 180.29996 * 18 17 16 20 20 C 1.38770 * 120.66907 * 359.94780 * 19 18 17 21 21 C 1.37852 * 120.45509 * 0.02873 * 20 19 18 22 22 C 1.38836 * 119.68841 * 359.97438 * 21 20 19 23 23 N 1.36037 * 124.95317 * 89.99746 * 15 14 13 24 24 C 1.46505 * 126.34475 * 359.97438 * 23 15 14 25 25 C 1.52994 * 109.47009 * 120.00138 * 24 23 15 26 26 C 1.52996 * 109.46487 * 239.99769 * 24 23 15 27 27 H 1.09008 * 109.46539 * 294.89535 * 1 2 3 28 28 H 1.08995 * 109.47209 * 54.89631 * 1 2 3 29 29 H 1.08998 * 109.46850 * 174.90251 * 1 2 3 30 30 H 1.09006 * 109.46937 * 240.00706 * 2 1 3 31 31 H 1.09002 * 109.47681 * 120.00828 * 2 1 3 32 32 H 0.97000 * 120.00430 * 180.02562 * 8 7 5 33 33 H 1.00899 * 111.00204 * 81.91449 * 13 3 2 34 34 H 1.09000 * 109.47599 * 54.78990 * 14 13 3 35 35 H 1.09002 * 109.47135 * 294.79931 * 14 13 3 36 36 H 1.08004 * 120.05593 * 0.26787 * 18 17 16 37 37 H 1.07995 * 119.66305 * 179.97438 * 19 18 17 38 38 H 1.08008 * 119.77495 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.15897 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47051 * 359.97438 * 24 23 15 41 41 H 1.09002 * 109.47178 * 179.97438 * 25 24 23 42 42 H 1.09003 * 109.47221 * 299.99230 * 25 24 23 43 43 H 1.08994 * 109.48002 * 59.99561 * 25 24 23 44 44 H 1.08996 * 109.47504 * 60.00381 * 26 24 23 45 45 H 1.09001 * 109.47136 * 180.02562 * 26 24 23 46 46 H 1.09004 * 109.47468 * 299.99659 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9779 -0.8493 5 6 3.5433 1.4438 -0.1053 6 1 4.1390 1.8917 0.6764 7 6 4.1582 0.8732 -1.1995 8 7 3.4329 0.3274 -2.1510 9 14 6.0217 0.8742 -1.3298 10 1 6.5629 -0.3551 -0.6965 11 1 6.4179 0.9095 -2.7605 12 1 6.5657 2.0691 -0.6359 13 7 1.6360 2.1046 1.2475 14 6 1.5391 3.5589 1.0643 15 6 1.0012 4.1891 2.3230 16 7 -0.2589 4.3932 2.5746 17 6 -0.3925 4.9750 3.7943 18 6 -1.4925 5.3996 4.5443 19 6 -1.3009 5.9700 5.7706 20 6 -0.0218 6.1328 6.2834 21 6 1.0781 5.7211 5.5616 22 6 0.9028 5.1392 4.3133 23 7 1.7626 4.6329 3.3593 24 6 3.2242 4.5826 3.4466 25 6 3.7755 6.0023 3.5929 26 6 3.6339 3.7486 4.6621 27 1 -0.3633 0.4327 0.9323 28 1 -0.3633 0.5909 -0.8407 29 1 -0.3633 -1.0236 -0.0913 30 1 1.8933 -0.5138 -0.8901 31 1 1.8935 -0.5140 0.8899 32 1 3.8654 -0.0744 -2.9207 33 1 2.2689 1.8763 1.9995 34 1 0.8679 3.7765 0.2335 35 1 2.5275 3.9646 0.8485 36 1 -2.4924 5.2773 4.1547 37 1 -2.1535 6.2972 6.3470 38 1 0.1131 6.5853 7.2549 39 1 2.0715 5.8505 5.9651 40 1 3.6268 4.1276 2.5417 41 1 4.8629 5.9649 3.6584 42 1 3.4836 6.5965 2.7270 43 1 3.3729 6.4570 4.4980 44 1 3.2412 2.7372 4.5579 45 1 4.7213 3.7115 4.7274 46 1 3.2313 4.2034 5.5672 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204012775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:37 Heat of formation + Delta-G solvation = 59.756199 kcal Electronic energy + Delta-G solvation = -25006.687665 eV Core-core repulsion = 21703.334111 eV Total energy + Delta-G solvation = -3303.353554 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04749 -37.54609 -36.20690 -35.86787 -32.76637 -31.45466 -31.28990 -29.68039 -29.19316 -27.45011 -26.89322 -24.88007 -23.07477 -22.62766 -21.71909 -21.13050 -19.81137 -19.45608 -17.19995 -16.77083 -16.67347 -15.53055 -15.32810 -14.83109 -14.73931 -14.27711 -14.13768 -13.74893 -13.58112 -13.33822 -13.27075 -12.73753 -12.56067 -12.44672 -12.25380 -11.88139 -11.85159 -11.71300 -11.39722 -11.34321 -11.20962 -11.17388 -11.01890 -10.93223 -10.70217 -10.25554 -10.16962 -9.67824 -9.61133 -9.56772 -9.15129 -8.46823 -8.13758 -7.91591 -7.41806 -6.08702 -4.22899 1.09878 1.65578 2.73041 3.00944 3.19786 3.27707 3.28090 4.03215 4.30300 4.40944 4.48107 4.59909 4.79920 4.90652 5.04976 5.09923 5.16978 5.32748 5.34604 5.42504 5.48035 5.53290 5.58646 5.60629 5.72172 5.79987 5.95141 5.99718 6.02292 6.17580 6.25242 6.41964 6.53343 6.58299 6.63358 6.71006 6.73358 7.02796 7.07380 7.20525 7.32000 7.39013 7.51372 7.69136 7.95834 8.00763 8.19414 8.24531 8.49277 8.87570 9.45185 10.91624 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.004252 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.213888 B = 6583.379537 C = 7730.060373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.037 0.963 5 C -0.551 4.551 6 H 0.052 0.948 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.676 5.676 14 C 0.139 3.861 15 C 0.310 3.690 16 N -0.487 5.487 17 C 0.048 3.952 18 C -0.066 4.066 19 C -0.135 4.135 20 C -0.115 4.115 21 C -0.110 4.110 22 C 0.049 3.951 23 N -0.482 5.482 24 C 0.129 3.871 25 C -0.163 4.163 26 C -0.164 4.164 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.024 0.976 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.263 0.737 33 H 0.327 0.673 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 10.589 13.997 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.055 0.945 5 C -0.590 4.590 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.518 5.518 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.306 5.306 14 C 0.008 3.992 15 C 0.044 3.956 16 N -0.206 5.206 17 C -0.071 4.071 18 C -0.086 4.086 19 C -0.156 4.156 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.061 4.061 23 N -0.172 5.172 24 C 0.026 3.974 25 C -0.221 4.221 26 C -0.221 4.221 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.110 0.890 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.955 10.174 13.151 16.887 hybrid contribution 2.772 0.353 0.364 2.818 sum -0.183 10.527 13.515 17.132 Atomic orbital electron populations 1.21693 0.98734 0.98335 1.00684 1.21485 0.92307 0.98788 1.01691 1.19212 0.92792 0.91388 0.85603 0.94513 1.21791 0.92439 1.38823 1.05966 0.92968 1.24908 0.97954 0.94834 0.95572 1.69869 1.34972 1.37468 1.09486 0.86661 0.85983 0.78364 0.77343 1.20613 1.21126 1.20121 1.60861 1.55579 1.03828 1.10374 1.20350 0.99088 0.90467 0.89303 1.24047 0.85762 0.94773 0.91020 1.70510 1.16096 1.19508 1.14452 1.19183 0.92372 1.02501 0.93072 1.19990 0.97002 0.97976 0.93608 1.20534 0.97090 1.02025 0.95951 1.20779 0.92014 1.01141 0.99545 1.19970 0.99102 1.01850 0.92108 1.18817 0.90880 1.03183 0.93204 1.45622 1.06595 1.49708 1.15265 1.21449 0.76611 0.97690 1.01651 1.22188 1.01716 0.95229 1.02985 1.22184 1.02298 1.00676 0.96979 0.93305 0.94301 0.95679 0.89043 0.95123 0.92711 0.85720 0.88317 0.93333 0.85726 0.85890 0.85890 0.86501 0.87301 0.90512 0.91786 0.91826 0.91313 0.90547 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.73 37.16 0.36 -2.51 16 2 C -0.10 -2.44 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 5.12 1.98 -68.86 -0.14 4.98 16 4 H 0.04 0.96 7.70 -51.93 -0.40 0.56 16 5 C -0.55 -13.86 8.47 -34.44 -0.29 -14.15 16 6 H 0.05 1.28 7.73 -52.49 -0.41 0.87 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -23.88 11.29 55.43 0.63 -23.26 16 9 Si 0.89 20.07 29.54 -169.99 -5.02 15.04 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 13 N -0.68 -13.74 5.72 -109.23 -0.62 -14.37 16 14 C 0.14 2.57 5.63 -4.98 -0.03 2.54 16 15 C 0.31 5.50 7.41 -154.83 -1.15 4.35 16 16 N -0.49 -9.31 11.27 -8.23 -0.09 -9.40 16 17 C 0.05 0.81 7.23 -84.70 -0.61 0.20 16 18 C -0.07 -0.93 10.05 -39.61 -0.40 -1.33 16 19 C -0.14 -1.54 9.96 -39.98 -0.40 -1.94 16 20 C -0.12 -1.25 10.03 -39.53 -0.40 -1.65 16 21 C -0.11 -1.35 8.77 -39.50 -0.35 -1.69 16 22 C 0.05 0.74 6.21 -83.99 -0.52 0.22 16 23 N -0.48 -7.30 2.65 -104.12 -0.28 -7.58 16 24 C 0.13 1.59 3.51 -67.93 -0.24 1.36 16 25 C -0.16 -1.67 9.25 37.15 0.34 -1.33 16 26 C -0.16 -1.79 9.25 37.16 0.34 -1.44 16 27 H 0.05 1.01 7.88 -51.92 -0.41 0.61 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.33 6.53 8.45 -39.29 -0.33 6.20 16 34 H 0.10 1.89 7.92 -51.93 -0.41 1.48 16 35 H 0.05 0.87 7.00 -51.93 -0.36 0.51 16 36 H 0.12 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.12 1.19 6.04 -52.49 -0.32 0.87 16 40 H 0.11 1.46 6.62 -51.93 -0.34 1.11 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.62 6.33 -51.93 -0.33 0.29 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.64 6.33 -51.93 -0.33 0.31 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -28.48 367.48 -10.87 -39.35 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.31 Total: 7.91 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.71 Total: -13.24 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.37 Total: -54.61 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.48 -10.87 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204012775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.108 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds