Wall clock time and date at job start Tue Mar 31 2020 08:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 119.99969 * 2 1 4 4 H 1.48496 * 109.47088 * 271.71622 * 3 2 1 5 5 H 1.48497 * 109.47202 * 31.72211 * 3 2 1 6 6 H 1.48500 * 109.47036 * 151.71780 * 3 2 1 7 7 C 1.39947 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99886 * 25.16437 * 7 2 1 9 9 C 1.41391 * 119.99995 * 205.16918 * 7 2 1 10 10 C 1.40739 * 120.24660 * 232.77507 * 9 7 2 11 11 C 1.37594 * 119.74593 * 180.32254 * 10 9 7 12 12 C 1.38648 * 120.25011 * 359.65705 * 11 10 9 13 13 C 1.38619 * 120.50264 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24536 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.12501 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47178 * 265.51751 * 15 14 13 17 17 C 1.46968 * 111.00003 * 294.74732 * 16 15 14 18 18 C 1.53055 * 109.50260 * 183.77214 * 17 16 15 19 19 N 1.47125 * 109.27335 * 300.91647 * 18 17 16 20 20 C 1.45964 * 111.00517 * 57.85532 * 19 18 17 21 21 C 1.54390 * 110.58858 * 66.27470 * 20 19 18 22 22 C 1.54448 * 102.94198 * 83.31050 * 21 20 19 23 23 N 1.47501 * 107.26574 * 21.61214 * 22 21 20 24 24 C 1.47989 * 108.60528 * 0.91698 * 23 22 21 25 25 C 1.47123 * 110.99883 * 58.41945 * 16 15 14 26 26 H 0.97000 * 119.99585 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.12134 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.87348 * 179.68397 * 11 10 9 29 29 H 1.08001 * 119.75157 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.87635 * 180.02562 * 13 12 11 31 31 H 1.08998 * 109.47109 * 145.51615 * 15 14 13 32 32 H 1.09001 * 109.47309 * 25.51981 * 15 14 13 33 33 H 1.08997 * 109.46250 * 63.75887 * 17 16 15 34 34 H 1.08999 * 109.45727 * 303.77814 * 17 16 15 35 35 H 1.08997 * 109.50048 * 180.98503 * 18 17 16 36 36 H 1.08991 * 109.53510 * 60.87655 * 18 17 16 37 37 H 1.00896 * 111.00407 * 181.81200 * 19 18 17 38 38 H 1.08998 * 110.71546 * 324.94387 * 21 20 19 39 39 H 1.08998 * 110.87175 * 201.74511 * 21 20 19 40 40 H 1.09009 * 109.88351 * 262.19620 * 22 21 20 41 41 H 1.09003 * 109.88528 * 141.03060 * 22 21 20 42 42 H 1.00897 * 111.00314 * 123.21112 * 23 22 21 43 43 H 1.09000 * 110.38077 * 95.51018 * 24 23 22 44 44 H 1.08997 * 110.38462 * 217.88019 * 24 23 22 45 45 H 1.09001 * 109.47170 * 58.32836 * 25 16 15 46 46 H 1.09000 * 109.47419 * 298.32065 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4534 2.0674 -1.3994 5 1 1.4584 2.6419 0.7361 6 1 3.5575 1.4300 0.6634 7 6 2.0080 -1.2120 -0.0005 8 1 1.5448 -2.1027 -0.3987 9 6 3.3212 -1.2703 0.5202 10 6 4.3665 -1.8112 -0.2515 11 6 5.6393 -1.8690 0.2680 12 6 5.8954 -1.3904 1.5438 13 6 4.8750 -0.8495 2.3103 14 6 3.5939 -0.7825 1.8114 15 6 2.4865 -0.1944 2.6473 16 7 1.7874 -1.2711 3.3614 17 6 1.0998 -2.1670 2.4209 18 6 0.3076 -3.2178 3.2026 19 7 1.2284 -3.9839 4.0568 20 6 1.9499 -3.1031 4.9701 21 6 0.9804 -2.4647 5.9880 22 6 0.8513 -3.5555 7.0739 23 7 2.0360 -4.4271 6.9618 24 6 2.8990 -3.9134 5.8749 25 6 2.7162 -2.0260 4.2171 26 1 -0.4849 0.8401 0.0004 27 1 4.1693 -2.1840 -1.2459 28 1 6.4419 -2.2884 -0.3205 29 1 6.8976 -1.4394 1.9434 30 1 5.0859 -0.4793 3.3027 31 1 1.7825 0.3297 2.0010 32 1 2.9082 0.5058 3.3685 33 1 1.8355 -2.6632 1.7881 34 1 0.4182 -1.5866 1.7991 35 1 -0.1883 -3.8928 2.5051 36 1 -0.4391 -2.7235 3.8240 37 1 0.7367 -4.7051 4.5629 38 1 0.0137 -2.2640 5.5262 39 1 1.4031 -1.5516 6.4070 40 1 -0.0548 -4.1383 6.9081 41 1 0.8224 -3.0942 8.0611 42 1 2.5396 -4.4668 7.8352 43 1 3.6783 -3.2688 6.2814 44 1 3.3408 -4.7398 5.3182 45 1 3.1856 -1.3482 4.9301 46 1 3.4836 -2.4912 3.5985 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235061561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:28 Heat of formation + Delta-G solvation = 49.238520 kcal Electronic energy + Delta-G solvation = -26543.952543 eV Core-core repulsion = 23240.142908 eV Total energy + Delta-G solvation = -3303.809634 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.185 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.04731 -38.41849 -36.14231 -33.89778 -33.26717 -30.71136 -30.21265 -30.02124 -29.18295 -26.80309 -25.18281 -24.99952 -22.93297 -21.57015 -21.09023 -20.57694 -19.67959 -18.27408 -17.41794 -16.61594 -15.86551 -15.46119 -15.13699 -14.74032 -14.33739 -14.16704 -13.78129 -13.66856 -13.61835 -13.36649 -12.92635 -12.82859 -12.73732 -12.24465 -12.09273 -11.65033 -11.58483 -11.48092 -11.37673 -10.99354 -10.96286 -10.73716 -10.66076 -10.36826 -10.17061 -10.09140 -10.01828 -9.88659 -9.63255 -8.78334 -8.46788 -8.01698 -7.72264 -7.41613 -7.30729 -6.78708 -4.38401 2.53421 2.57512 3.10541 3.20365 3.31049 4.04792 4.23473 4.48447 4.52660 4.65876 4.88800 5.07492 5.16217 5.28812 5.42485 5.50158 5.68821 5.77054 5.84888 5.89858 5.92710 5.95482 6.02032 6.03445 6.13004 6.14917 6.17517 6.35553 6.38596 6.47248 6.53713 6.67485 6.78390 6.82729 6.89459 7.03753 7.23210 7.30353 7.33673 7.39943 7.49316 7.56424 7.63960 7.78220 7.89464 7.97336 8.02413 8.09789 8.46459 8.69467 8.90671 10.23785 Molecular weight = 301.18amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.006190 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.072167 B = 4522.322084 C = 5302.395259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.102 3.898 3 Si 0.861 3.139 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.237 1.237 7 C -0.492 4.492 8 H 0.092 0.908 9 C 0.104 3.896 10 C -0.188 4.188 11 C -0.103 4.103 12 C -0.213 4.213 13 C -0.091 4.091 14 C -0.185 4.185 15 C 0.105 3.895 16 N -0.522 5.522 17 C 0.056 3.944 18 C 0.056 3.944 19 N -0.668 5.668 20 C 0.120 3.880 21 C -0.162 4.162 22 C 0.043 3.957 23 N -0.684 5.684 24 C 0.055 3.945 25 C 0.069 3.931 26 H 0.279 0.721 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.339 0.661 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.335 0.665 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -2.939 10.236 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.113 4.113 3 Si 0.685 3.315 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.160 1.160 7 C -0.523 4.523 8 H 0.109 0.891 9 C 0.102 3.898 10 C -0.207 4.207 11 C -0.121 4.121 12 C -0.232 4.232 13 C -0.110 4.110 14 C -0.188 4.188 15 C -0.022 4.022 16 N -0.245 5.245 17 C -0.071 4.071 18 C -0.073 4.073 19 N -0.299 5.299 20 C 0.027 3.973 21 C -0.203 4.203 22 C -0.086 4.086 23 N -0.313 5.313 24 C -0.075 4.075 25 C -0.061 4.061 26 H 0.090 0.910 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.157 0.843 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.150 0.850 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.587 -3.132 9.672 10.290 hybrid contribution 0.695 1.502 0.501 1.729 sum 2.283 -1.630 10.173 10.552 Atomic orbital electron populations 1.69719 1.07538 1.29414 1.37724 1.25589 0.94196 1.00062 0.91502 0.87065 0.83147 0.81966 0.79339 1.20145 1.20435 1.15979 1.18951 0.96394 0.96973 1.39993 0.89072 1.17627 0.93124 0.89400 0.89683 1.21493 0.92378 1.07692 0.99133 1.20746 0.96431 0.99615 0.95356 1.20545 0.97625 1.08574 0.96422 1.20592 0.93128 0.99413 0.97832 1.20712 0.94421 1.08012 0.95634 1.21046 0.93836 0.92940 0.94356 1.62688 1.27256 1.12393 1.22123 1.22559 0.98529 0.93185 0.92853 1.22223 0.93881 0.95719 0.95485 1.60283 1.31781 1.13870 1.23969 1.21276 0.93445 0.91752 0.90832 1.23324 1.02060 0.98056 0.96811 1.22671 0.94577 0.93319 0.98078 1.61919 1.08807 1.51613 1.08974 1.22807 0.94424 0.98246 0.92033 1.21871 0.94581 0.93589 0.96032 0.91013 0.87965 0.88820 0.88887 0.89040 0.89524 0.92871 0.92066 0.86986 0.91018 0.95286 0.84305 0.90233 0.91277 0.91299 0.93470 0.84989 0.93561 0.89374 0.92106 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.41 13.00 55.55 0.72 -19.69 16 2 C 0.10 2.49 3.29 -17.34 -0.06 2.44 16 3 Si 0.86 19.55 25.24 -169.99 -4.29 15.26 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.24 -5.50 5.96 56.52 0.34 -5.16 16 7 C -0.49 -12.24 5.73 -37.74 -0.22 -12.45 16 8 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.10 2.46 3.38 -106.82 -0.36 2.10 16 10 C -0.19 -4.22 9.80 -38.87 -0.38 -4.60 16 11 C -0.10 -2.10 10.02 -39.66 -0.40 -2.50 16 12 C -0.21 -4.25 10.05 -39.29 -0.39 -4.64 16 13 C -0.09 -1.86 8.24 -39.66 -0.33 -2.19 16 14 C -0.19 -4.09 2.39 -103.91 -0.25 -4.33 16 15 C 0.11 2.23 4.61 -4.98 -0.02 2.21 16 16 N -0.52 -10.26 4.75 -236.34 -1.12 -11.38 16 17 C 0.06 1.17 3.91 -3.76 -0.01 1.16 16 18 C 0.06 0.99 6.51 -3.67 -0.02 0.96 16 19 N -0.67 -10.84 6.42 -99.47 -0.64 -11.48 16 20 C 0.12 1.82 0.73 -131.23 -0.10 1.73 16 21 C -0.16 -2.24 5.72 -25.24 -0.14 -2.38 16 22 C 0.04 0.50 7.26 -2.73 -0.02 0.48 16 23 N -0.68 -8.04 7.38 -111.01 -0.82 -8.86 16 24 C 0.05 0.73 6.66 -2.63 -0.02 0.71 16 25 C 0.07 1.20 3.63 -4.14 -0.02 1.19 16 26 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 27 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 28 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.09 1.99 3.24 -51.93 -0.17 1.82 16 32 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.06 1.45 5.59 -51.93 -0.29 1.16 16 34 H 0.11 2.64 5.68 -51.93 -0.29 2.34 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.50 6.34 -51.93 -0.33 0.17 16 37 H 0.34 5.08 8.43 -39.29 -0.33 4.75 16 38 H 0.08 1.20 6.16 -51.93 -0.32 0.88 16 39 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 40 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.33 3.28 8.91 -39.29 -0.35 2.93 16 43 H 0.05 0.57 8.00 -51.93 -0.42 0.16 16 44 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.00 8.05 -51.93 -0.42 0.59 16 46 H 0.05 1.03 6.37 -51.93 -0.33 0.70 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -24.66 332.80 -10.95 -35.61 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -7.08 Total: 15.65 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.74 Total: -20.13 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -1.86 Total: -51.41 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.29 Total: 15.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -24.66 -10.95 -35.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235061561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.853 kcal (2) G-P(sol) polarization free energy of solvation -24.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds