Wall clock time and date at job start Tue Mar 31 2020 08:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46676 * 2 1 4 4 C 1.50695 * 109.47419 * 119.99697 * 2 1 3 5 5 C 1.38262 * 120.11854 * 300.00803 * 4 2 1 6 6 C 1.37934 * 119.77521 * 179.85913 * 5 4 2 7 7 C 1.38905 * 120.54226 * 0.02562 * 6 5 4 8 8 C 1.37661 * 119.68606 * 0.20148 * 7 6 5 9 9 C 1.37939 * 120.11311 * 119.98062 * 4 2 1 10 10 C 1.50629 * 122.56634 * 179.31809 * 8 7 6 11 11 H 1.09006 * 109.25422 * 257.50239 * 10 8 7 12 12 N 1.46898 * 109.25544 * 138.03953 * 10 8 7 13 13 C 1.46904 * 111.00367 * 155.00140 * 12 10 8 14 14 C 1.53001 * 109.47176 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47024 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46878 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00462 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99760 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00580 * 179.97438 * 18 16 15 20 20 Si 1.86807 * 120.00184 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46905 * 89.99755 * 20 18 16 22 22 H 1.48494 * 109.47170 * 210.00207 * 20 18 16 23 23 H 1.48499 * 109.46867 * 330.00411 * 20 18 16 24 24 C 1.52796 * 110.61227 * 17.78288 * 10 8 7 25 25 C 1.53324 * 108.35419 * 308.92853 * 24 10 8 26 26 C 1.50632 * 117.75416 * 180.26210 * 7 6 5 27 27 H 1.08998 * 109.47580 * 299.99384 * 1 2 3 28 28 H 1.09005 * 109.47575 * 60.00073 * 1 2 3 29 29 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47580 * 240.00616 * 2 1 3 31 31 H 1.09000 * 109.47302 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47133 * 300.00159 * 3 2 1 33 33 H 1.09008 * 109.46770 * 59.99924 * 3 2 1 34 34 H 1.08005 * 120.11416 * 359.87672 * 5 4 2 35 35 H 1.07996 * 119.72590 * 180.02562 * 6 5 4 36 36 H 1.07998 * 119.72371 * 0.02562 * 9 4 2 37 37 H 1.00906 * 111.00364 * 31.04601 * 12 10 8 38 38 H 1.08998 * 109.46276 * 299.99609 * 13 12 10 39 39 H 1.08992 * 109.47312 * 59.99706 * 13 12 10 40 40 H 1.08997 * 109.47140 * 299.99824 * 14 13 12 41 41 H 1.09001 * 109.47375 * 59.99628 * 14 13 12 42 42 H 1.09008 * 109.46406 * 299.99660 * 15 14 13 43 43 H 1.08992 * 109.47359 * 59.99766 * 15 14 13 44 44 H 0.96995 * 120.01167 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.73582 * 189.18987 * 24 10 8 46 46 H 1.08998 * 109.65314 * 68.62310 * 24 10 8 47 47 H 1.09002 * 109.68341 * 310.09052 * 25 24 10 48 48 H 1.08999 * 109.67969 * 189.57488 * 25 24 10 49 49 H 1.08993 * 109.25615 * 77.43979 * 26 7 6 50 50 H 1.09000 * 109.22229 * 317.98814 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 1.6998 -0.2401 2.4874 6 6 2.1611 -0.8974 3.6088 7 6 2.9581 -2.0285 3.4862 8 6 3.2932 -2.4940 2.2348 9 6 2.8252 -1.8322 1.1066 10 6 4.1651 -3.7045 2.0266 11 1 5.1704 -3.3811 1.7562 12 7 3.6098 -4.5202 0.9385 13 6 4.6553 -5.3342 0.3042 14 6 4.0401 -6.1675 -0.8218 15 6 5.1292 -7.0148 -1.4828 16 6 4.5233 -7.8351 -2.5923 17 1 3.4671 -7.7600 -2.8046 18 6 5.3173 -8.6823 -3.3358 19 7 4.7886 -9.3986 -4.3038 20 14 7.1442 -8.8129 -2.9682 21 1 7.3719 -9.8833 -1.9643 22 1 7.8781 -9.1409 -4.2168 23 1 7.6348 -7.5182 -2.4312 24 6 4.2323 -4.5446 3.3011 25 6 4.6057 -3.6227 4.4679 26 6 3.4220 -2.7003 4.7521 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 3.1299 1.4427 0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6764 1.9564 0.8901 34 1 1.0806 0.6388 2.5908 35 1 1.9005 -0.5297 4.5902 36 1 3.0846 -2.1989 0.1244 37 1 3.1384 -3.9430 0.2581 38 1 5.4250 -4.6809 -0.1066 39 1 5.0997 -5.9974 1.0464 40 1 3.2701 -6.8207 -0.4114 41 1 3.5960 -5.5040 -1.5639 42 1 5.8989 -6.3612 -1.8933 43 1 5.5736 -7.6783 -0.7410 44 1 5.3472 -9.9944 -4.8271 45 1 4.9887 -5.3215 3.1904 46 1 3.2610 -5.0016 3.4905 47 1 5.4790 -3.0277 4.2007 48 1 4.8257 -4.2207 5.3523 49 1 2.6026 -3.2854 5.1695 50 1 3.7238 -1.9398 5.4722 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090408024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:26 Heat of formation + Delta-G solvation = -15.051433 kcal Electronic energy + Delta-G solvation = -24311.551690 eV Core-core repulsion = 21108.494577 eV Total energy + Delta-G solvation = -3203.057113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52508 -37.71437 -36.01830 -34.36301 -33.60037 -32.02386 -30.44502 -29.68294 -28.27391 -27.36898 -26.11596 -23.54779 -23.39824 -22.40642 -21.31040 -20.87385 -20.14511 -18.82430 -16.81474 -16.54231 -16.10791 -15.56351 -15.33411 -14.75890 -14.39738 -14.28710 -14.11056 -14.00095 -13.76621 -13.64337 -13.30138 -12.99832 -12.91998 -12.51484 -12.50159 -12.28376 -12.03419 -11.82804 -11.75190 -11.56445 -11.38253 -11.25841 -11.02487 -10.95687 -10.92514 -10.75796 -10.57980 -10.27833 -9.91637 -9.71860 -9.54723 -9.14509 -8.94360 -8.57834 -8.51082 -8.12247 -6.01398 -3.99063 1.23198 1.27151 3.32338 3.39384 3.43176 3.57284 4.32442 4.38474 4.47311 4.47531 4.60836 4.72052 4.79341 4.94363 4.97455 5.03681 5.09484 5.18121 5.28643 5.32442 5.33566 5.38410 5.40034 5.48793 5.58322 5.60852 5.64340 5.71593 5.73092 5.77234 5.79620 5.87737 5.89865 5.94764 6.01165 6.05248 6.09715 6.19532 6.28946 6.36456 6.51896 6.54870 6.58306 6.63309 6.89954 6.94523 7.24862 7.37278 7.46688 7.59070 7.83208 8.58019 9.04290 9.61247 11.12221 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.014435 B = 0.003119 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.297308 B = 8974.897723 C =10434.429718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.076 4.076 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.074 4.074 8 C -0.066 4.066 9 C -0.115 4.115 10 C 0.126 3.874 11 H 0.052 0.948 12 N -0.684 5.684 13 C 0.056 3.944 14 C -0.099 4.099 15 C -0.012 4.012 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.079 4.079 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.340 0.660 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 21.889 17.741 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.076 4.076 5 C -0.134 4.134 6 C -0.138 4.138 7 C -0.075 4.075 8 C -0.066 4.066 9 C -0.134 4.134 10 C 0.016 3.984 11 H 0.069 0.931 12 N -0.318 5.318 13 C -0.073 4.073 14 C -0.137 4.137 15 C -0.050 4.050 16 C -0.556 4.556 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.145 4.145 25 C -0.158 4.158 26 C -0.116 4.116 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.161 0.839 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.817 21.250 17.998 28.261 hybrid contribution 1.418 0.477 -0.510 1.581 sum -3.399 21.727 17.488 28.097 Atomic orbital electron populations 1.21846 0.94254 1.02251 1.01714 1.20134 0.96052 0.95955 0.95538 1.21848 1.01208 0.95182 1.01772 1.19717 0.97611 0.95549 0.94696 1.20833 1.00569 1.00068 0.91979 1.21086 0.98487 0.95759 0.98478 1.19551 0.98024 0.95761 0.94127 1.19626 0.98232 0.96259 0.92525 1.21016 0.98614 0.95512 0.98234 1.20341 0.94980 0.89684 0.93354 0.93064 1.60716 1.29691 1.27303 1.14050 1.22225 0.92326 0.95787 0.96958 1.21441 0.99566 0.97812 0.94899 1.19538 0.94667 0.94991 0.95836 1.21157 0.97085 1.22752 1.14636 0.91030 1.25044 0.98534 0.95217 0.94803 1.69915 1.36004 1.27176 1.21331 0.86768 0.85882 0.78862 0.77698 1.20292 1.21442 1.19098 1.21567 1.02790 0.97410 0.92778 1.21561 0.97673 0.97805 0.98739 1.20468 0.98390 0.98386 0.94358 0.92626 0.92395 0.92295 0.90333 0.92601 0.92383 0.92600 0.86373 0.86362 0.86284 0.83933 0.95816 0.91356 0.91911 0.93118 0.96890 0.97053 0.92788 0.91474 0.90625 0.91885 0.91283 0.90582 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.01 37.16 0.33 -0.82 16 2 C -0.06 -0.52 3.10 -91.77 -0.28 -0.80 16 3 C -0.14 -1.10 9.01 37.16 0.33 -0.76 16 4 C -0.08 -0.79 4.77 -104.73 -0.50 -1.29 16 5 C -0.12 -1.13 8.72 -39.68 -0.35 -1.47 16 6 C -0.12 -1.17 9.61 -39.45 -0.38 -1.55 16 7 C -0.07 -0.80 5.74 -104.62 -0.60 -1.40 16 8 C -0.07 -0.80 5.55 -104.62 -0.58 -1.38 16 9 C -0.12 -1.36 8.50 -39.44 -0.34 -1.69 16 10 C 0.13 1.60 2.53 -69.00 -0.17 1.43 16 11 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 12 N -0.68 -10.04 6.29 -108.10 -0.68 -10.72 16 13 C 0.06 0.92 5.48 -3.82 -0.02 0.90 16 14 C -0.10 -2.01 5.41 -26.73 -0.14 -2.15 16 15 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 16 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 17 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 20 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 24 C -0.11 -1.25 5.38 -26.67 -0.14 -1.39 16 25 C -0.12 -1.11 5.97 -26.70 -0.16 -1.27 16 26 C -0.08 -0.70 5.67 -28.05 -0.16 -0.86 16 27 H 0.05 0.41 7.41 -51.93 -0.38 0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.39 7.40 -51.92 -0.38 0.01 16 34 H 0.12 0.93 7.13 -52.48 -0.37 0.55 16 35 H 0.12 0.90 8.05 -52.49 -0.42 0.48 16 36 H 0.12 1.38 6.40 -52.49 -0.34 1.04 16 37 H 0.34 4.82 6.07 -39.29 -0.24 4.58 16 38 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 39 H 0.07 1.13 7.53 -51.93 -0.39 0.74 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.01 0.31 7.20 -51.92 -0.37 -0.06 16 43 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.07 0.80 7.63 -51.93 -0.40 0.40 16 46 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 47 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -31.13 383.95 -11.65 -42.77 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -9.16 Total: 0.91 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -3.70 Total: -28.54 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.09 Total: -38.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.13 -11.65 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090408024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.722 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds