Wall clock time and date at job start Tue Mar 31 2020 08:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53123 * 1 3 3 C 1.54486 * 107.30235 * 2 1 4 4 C 1.52464 * 109.99956 * 116.79304 * 2 1 3 5 5 C 1.52709 * 110.77188 * 72.39733 * 4 2 1 6 6 N 1.46903 * 109.08147 * 180.51856 * 5 4 2 7 7 C 1.39684 * 119.99376 * 155.00020 * 6 5 4 8 8 C 1.39332 * 119.95410 * 0.02562 * 7 6 5 9 9 C 1.38486 * 120.42419 * 179.97438 * 8 7 6 10 10 C 1.37687 * 120.32363 * 359.97438 * 9 8 7 11 11 C 1.40754 * 119.89586 * 0.02562 * 10 9 8 12 12 C 1.41405 * 120.20767 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99734 * 24.33050 * 12 11 10 14 14 C 1.39930 * 119.99525 * 204.33082 * 12 11 10 15 15 N 1.30828 * 120.00462 * 17.73372 * 14 12 11 16 16 Si 1.86800 * 119.99703 * 197.73422 * 14 12 11 17 17 H 1.48501 * 109.47231 * 89.99887 * 16 14 12 18 18 H 1.48508 * 109.47369 * 209.99865 * 16 14 12 19 19 H 1.48501 * 109.47090 * 329.99646 * 16 14 12 20 20 C 1.38281 * 119.94829 * 179.72406 * 7 6 5 21 21 C 1.52709 * 108.84406 * 61.58714 * 5 4 2 22 22 C 1.52448 * 110.80048 * 298.47581 * 21 5 4 23 23 C 1.54490 * 107.61074 * 170.88164 * 22 21 5 24 24 C 1.53139 * 109.99941 * 287.46254 * 22 21 5 25 25 C 1.51734 * 112.64748 * 52.02076 * 22 21 5 26 26 H 1.09005 * 109.47232 * 303.21223 * 1 2 3 27 27 H 1.09005 * 109.47405 * 63.20886 * 1 2 3 28 28 H 1.08999 * 109.47559 * 183.21156 * 1 2 3 29 29 H 1.08996 * 109.47351 * 178.34647 * 3 2 1 30 30 H 1.09001 * 109.46817 * 298.34417 * 3 2 1 31 31 H 1.09001 * 109.47291 * 58.33895 * 3 2 1 32 32 H 1.09297 * 109.43591 * 192.96319 * 4 2 1 33 33 H 1.09300 * 109.43247 * 311.85772 * 4 2 1 34 34 H 1.08653 * 110.51030 * 300.05700 * 5 4 2 35 35 H 0.96989 * 120.00291 * 334.99709 * 6 5 4 36 36 H 1.07995 * 119.78868 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.83663 * 180.02562 * 9 8 7 38 38 H 1.07998 * 120.05354 * 180.02562 * 10 9 8 39 39 H 0.97006 * 120.00001 * 180.02562 * 15 14 12 40 40 H 1.08000 * 120.16184 * 359.97438 * 20 7 6 41 41 H 1.09294 * 109.29063 * 59.16307 * 21 5 4 42 42 H 1.09313 * 109.25069 * 177.84922 * 21 5 4 43 43 H 1.09005 * 109.46623 * 60.00380 * 23 22 21 44 44 H 1.09000 * 109.47091 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47646 * 300.00377 * 23 22 21 46 46 H 1.09007 * 109.47131 * 60.00490 * 24 22 21 47 47 H 1.09004 * 109.46788 * 179.97438 * 24 22 21 48 48 H 1.08994 * 109.47142 * 300.00129 * 24 22 21 49 49 H 1.10239 * 108.62884 * 194.09329 * 25 22 21 50 50 H 1.10268 * 108.56615 * 79.28507 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5312 0.0000 0.0000 3 6 1.9907 1.4750 0.0000 4 6 2.0527 -0.6458 1.2789 5 6 1.8321 -2.1566 1.2515 6 7 2.3354 -2.7382 2.5031 7 6 1.8173 -3.9491 2.9684 8 6 0.8236 -4.6047 2.2444 9 6 0.3034 -5.8059 2.6964 10 6 0.7634 -6.3660 3.8671 11 6 1.7668 -5.7153 4.6093 12 6 2.2437 -6.2844 5.8127 13 1 2.1601 -7.3485 5.9771 14 6 2.8238 -5.4687 6.7905 15 7 2.6234 -4.1760 6.7674 16 14 3.8845 -6.2254 8.1290 17 1 5.2985 -6.2648 7.6771 18 1 3.7822 -5.4069 9.3639 19 1 3.4161 -7.6063 8.4103 20 6 2.2957 -4.4985 4.1438 21 6 2.6103 -2.7475 0.0779 22 6 2.1107 -2.1774 -1.2448 23 6 3.0865 -2.6377 -2.3505 24 6 0.7349 -2.7604 -1.5801 25 6 2.0780 -0.6604 -1.2520 26 1 -0.3634 0.5629 0.8598 27 1 -0.3634 0.4632 -0.9174 28 1 -0.3634 -1.0260 0.0576 29 1 3.0795 1.5164 0.0297 30 1 1.6329 1.9669 -0.9045 31 1 1.5838 1.9823 0.8747 32 1 3.1209 -0.4386 1.3815 33 1 1.5307 -0.2206 2.1399 34 1 0.7739 -2.3853 1.1603 35 1 3.0274 -2.2814 3.0064 36 1 0.4574 -4.1737 1.3244 37 1 -0.4662 -6.3061 2.1274 38 1 0.3549 -7.3031 4.2153 39 1 3.0259 -3.6106 7.4451 40 1 3.0696 -3.9939 4.7031 41 1 3.6720 -2.5167 0.1958 42 1 2.4880 -3.8338 0.0748 43 1 3.1043 -3.7269 -2.3889 44 1 2.7564 -2.2459 -3.3126 45 1 4.0870 -2.2655 -2.1302 46 1 0.0292 -2.5041 -0.7899 47 1 0.3860 -2.3470 -2.5264 48 1 0.8101 -3.8446 -1.6626 49 1 1.4812 -0.3251 -2.1160 50 1 3.1010 -0.2880 -1.4269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313434708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:02 Heat of formation + Delta-G solvation = -16.116015 kcal Electronic energy + Delta-G solvation = -25552.116852 eV Core-core repulsion = 22349.013576 eV Total energy + Delta-G solvation = -3203.103276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05001 -37.56774 -35.00644 -34.87619 -33.25352 -30.45710 -29.38264 -27.86310 -26.80375 -26.63961 -26.58611 -26.08652 -25.09490 -21.83837 -20.81283 -19.74727 -19.58128 -17.88181 -17.09723 -15.84344 -15.44816 -14.84687 -14.77638 -14.58488 -14.29342 -14.19203 -13.85680 -13.65218 -13.17312 -12.81675 -12.61360 -12.55227 -12.28196 -12.11539 -12.11009 -11.92530 -11.70577 -11.58301 -11.56075 -11.31596 -11.04343 -10.98595 -10.89996 -10.82528 -10.60749 -10.51313 -10.42113 -10.23180 -10.04833 -9.87802 -9.51441 -9.34910 -9.16247 -8.66914 -7.24726 -6.67904 -6.07322 -4.25902 2.91178 3.12638 3.16366 3.29366 3.39962 4.01519 4.22170 4.55285 4.70072 4.78380 4.85099 5.01188 5.04602 5.15414 5.33293 5.50801 5.53577 5.55133 5.60151 5.65978 5.68850 5.70636 5.80351 5.83112 5.87612 5.90192 5.94217 5.99056 6.05677 6.11848 6.13703 6.20335 6.22439 6.32211 6.38770 6.43144 6.50253 6.59824 6.62836 6.74611 6.95583 7.18225 7.20397 7.45101 7.51670 7.89080 8.03058 8.18333 8.23861 8.55858 8.80513 8.91095 9.07353 9.19147 10.30837 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.020068 B = 0.003671 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.904178 B = 7625.430267 C = 8192.734451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.114 4.114 5 C 0.165 3.835 6 N -0.758 5.758 7 C 0.220 3.780 8 C -0.298 4.298 9 C -0.067 4.067 10 C -0.259 4.259 11 C 0.139 3.861 12 C -0.466 4.466 13 H 0.075 0.925 14 C 0.079 3.921 15 N -0.793 5.793 16 Si 0.903 3.097 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.263 1.263 20 C -0.233 4.233 21 C -0.120 4.120 22 C -0.054 4.054 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.091 4.091 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.387 0.613 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.276 0.724 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.091 9.617 -13.841 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.052 4.052 3 C -0.202 4.202 4 C -0.152 4.152 5 C 0.059 3.941 6 N -0.390 5.390 7 C 0.121 3.879 8 C -0.321 4.321 9 C -0.086 4.086 10 C -0.280 4.280 11 C 0.136 3.864 12 C -0.496 4.496 13 H 0.093 0.907 14 C -0.139 4.139 15 N -0.419 5.419 16 Si 0.728 3.272 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.187 1.187 20 C -0.257 4.257 21 C -0.159 4.159 22 C -0.055 4.055 23 C -0.202 4.202 24 C -0.201 4.201 25 C -0.129 4.129 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.220 0.780 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.034 9.856 -13.860 17.007 hybrid contribution 0.779 -0.067 0.858 1.160 sum 0.812 9.790 -13.003 16.296 Atomic orbital electron populations 1.22063 0.94593 1.02325 1.01258 1.20287 0.95587 0.94751 0.94610 1.22297 1.00869 0.95595 1.01434 1.21741 1.01174 0.95352 0.96920 1.20519 0.98224 0.91017 0.84368 1.44659 1.45480 1.23794 1.25059 1.17638 0.92565 0.84914 0.92810 1.19909 1.07798 1.00755 1.03638 1.20280 0.97682 0.94913 0.95688 1.20845 1.04374 1.03024 0.99727 1.17313 0.87729 0.90410 0.90927 1.19557 1.34636 0.95265 1.00167 0.90671 1.25854 0.94791 0.94540 0.98669 1.69873 1.34710 1.05150 1.32165 0.86405 0.80843 0.80212 0.79741 1.19442 1.20490 1.18712 1.20727 1.06881 1.01230 0.96841 1.21992 0.99692 1.01090 0.93124 1.20335 0.95564 0.94286 0.95316 1.22292 0.98757 1.01217 0.97885 1.22050 0.96409 1.00717 1.00922 1.21330 1.00941 0.94023 0.96600 0.92759 0.92978 0.91929 0.92904 0.92958 0.92704 0.92083 0.91635 0.90479 0.78026 0.89496 0.89814 0.89553 0.91285 0.86660 0.92497 0.91325 0.92651 0.93152 0.93023 0.92116 0.93192 0.92601 0.92530 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.00 37.22 0.30 -1.23 16 2 C -0.05 -0.55 0.71 -154.58 -0.11 -0.66 16 3 C -0.14 -1.35 8.06 37.94 0.31 -1.04 16 4 C -0.11 -1.46 3.96 -27.15 -0.11 -1.56 16 5 C 0.16 2.52 1.95 -68.01 -0.13 2.39 16 6 N -0.76 -14.40 5.23 -52.37 -0.27 -14.68 16 7 C 0.22 5.11 6.63 -83.86 -0.56 4.55 16 8 C -0.30 -6.77 8.94 -39.08 -0.35 -7.11 16 9 C -0.07 -1.56 10.02 -39.69 -0.40 -1.96 16 10 C -0.26 -6.64 9.79 -38.83 -0.38 -7.02 16 11 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 12 C -0.47 -12.77 9.05 -37.74 -0.34 -13.11 16 13 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 14 C 0.08 2.03 5.14 -17.35 -0.09 1.94 16 15 N -0.79 -20.94 10.96 55.55 0.61 -20.33 16 16 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 20 C -0.23 -6.14 8.53 -38.67 -0.33 -6.47 16 21 C -0.12 -1.70 4.07 -27.16 -0.11 -1.81 16 22 C -0.05 -0.62 0.71 -154.58 -0.11 -0.73 16 23 C -0.14 -1.50 8.06 37.94 0.31 -1.19 16 24 C -0.14 -1.63 8.00 37.23 0.30 -1.33 16 25 C -0.09 -0.94 3.48 -28.01 -0.10 -1.04 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 28 H 0.06 0.72 4.72 -51.93 -0.25 0.47 16 29 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.77 8.10 -51.76 -0.42 0.35 16 33 H 0.06 0.89 8.12 -51.76 -0.42 0.47 16 34 H 0.08 1.29 4.36 -52.12 -0.23 1.06 16 35 H 0.39 7.11 8.60 -40.82 -0.35 6.76 16 36 H 0.09 1.78 6.20 -52.49 -0.33 1.46 16 37 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.12 3.14 6.17 -52.49 -0.32 2.82 16 41 H 0.06 0.82 8.10 -51.76 -0.42 0.40 16 42 H 0.07 1.13 7.86 -51.75 -0.41 0.72 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 46 H 0.06 0.73 4.73 -51.93 -0.25 0.48 16 47 H 0.05 0.49 8.07 -51.93 -0.42 0.07 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.54 7.88 -51.22 -0.40 0.13 16 50 H 0.06 0.56 7.62 -51.21 -0.39 0.17 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -27.64 373.71 -10.35 -37.99 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -8.79 Total: 11.39 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: -2.50 Total: -34.14 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.33 Total: -35.01 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.64 -10.35 -37.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.875 kcal (2) G-P(sol) polarization free energy of solvation -27.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds