Wall clock time and date at job start Tue Mar 31 2020 08:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53123 * 1 3 3 C 1.54486 * 107.30235 * 2 1 4 4 C 1.52464 * 109.99956 * 116.79304 * 2 1 3 5 5 C 1.52709 * 110.77188 * 72.39733 * 4 2 1 6 6 N 1.46903 * 109.08147 * 180.51856 * 5 4 2 7 7 C 1.39684 * 119.99376 * 155.00020 * 6 5 4 8 8 C 1.39332 * 119.95410 * 0.02562 * 7 6 5 9 9 C 1.38486 * 120.42419 * 179.97438 * 8 7 6 10 10 C 1.37687 * 120.32363 * 359.97438 * 9 8 7 11 11 C 1.40754 * 119.89586 * 0.02562 * 10 9 8 12 12 C 1.41405 * 120.20767 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99734 * 24.33050 * 12 11 10 14 14 C 1.39930 * 119.99525 * 204.33082 * 12 11 10 15 15 N 1.30828 * 120.00462 * 17.73372 * 14 12 11 16 16 Si 1.86800 * 119.99703 * 197.73422 * 14 12 11 17 17 H 1.48501 * 109.47231 * 89.99887 * 16 14 12 18 18 H 1.48508 * 109.47369 * 209.99865 * 16 14 12 19 19 H 1.48501 * 109.47090 * 329.99646 * 16 14 12 20 20 C 1.38281 * 119.94829 * 179.72406 * 7 6 5 21 21 C 1.52709 * 108.84406 * 61.58714 * 5 4 2 22 22 C 1.52448 * 110.80048 * 298.47581 * 21 5 4 23 23 C 1.54490 * 107.61074 * 170.88164 * 22 21 5 24 24 C 1.53139 * 109.99941 * 287.46254 * 22 21 5 25 25 C 1.51734 * 112.64748 * 52.02076 * 22 21 5 26 26 H 1.09005 * 109.47232 * 303.21223 * 1 2 3 27 27 H 1.09005 * 109.47405 * 63.20886 * 1 2 3 28 28 H 1.08999 * 109.47559 * 183.21156 * 1 2 3 29 29 H 1.08996 * 109.47351 * 178.34647 * 3 2 1 30 30 H 1.09001 * 109.46817 * 298.34417 * 3 2 1 31 31 H 1.09001 * 109.47291 * 58.33895 * 3 2 1 32 32 H 1.09297 * 109.43591 * 192.96319 * 4 2 1 33 33 H 1.09300 * 109.43247 * 311.85772 * 4 2 1 34 34 H 1.08653 * 110.51030 * 300.05700 * 5 4 2 35 35 H 0.96989 * 120.00291 * 334.99709 * 6 5 4 36 36 H 1.07995 * 119.78868 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.83663 * 180.02562 * 9 8 7 38 38 H 1.07998 * 120.05354 * 180.02562 * 10 9 8 39 39 H 0.97006 * 120.00001 * 180.02562 * 15 14 12 40 40 H 1.08000 * 120.16184 * 359.97438 * 20 7 6 41 41 H 1.09294 * 109.29063 * 59.16307 * 21 5 4 42 42 H 1.09313 * 109.25069 * 177.84922 * 21 5 4 43 43 H 1.09005 * 109.46623 * 60.00380 * 23 22 21 44 44 H 1.09000 * 109.47091 * 179.97438 * 23 22 21 45 45 H 1.08997 * 109.47646 * 300.00377 * 23 22 21 46 46 H 1.09007 * 109.47131 * 60.00490 * 24 22 21 47 47 H 1.09004 * 109.46788 * 179.97438 * 24 22 21 48 48 H 1.08994 * 109.47142 * 300.00129 * 24 22 21 49 49 H 1.10239 * 108.62884 * 194.09329 * 25 22 21 50 50 H 1.10268 * 108.56615 * 79.28507 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5312 0.0000 0.0000 3 6 1.9907 1.4750 0.0000 4 6 2.0527 -0.6458 1.2789 5 6 1.8321 -2.1566 1.2515 6 7 2.3354 -2.7382 2.5031 7 6 1.8173 -3.9491 2.9684 8 6 0.8236 -4.6047 2.2444 9 6 0.3034 -5.8059 2.6964 10 6 0.7634 -6.3660 3.8671 11 6 1.7668 -5.7153 4.6093 12 6 2.2437 -6.2844 5.8127 13 1 2.1601 -7.3485 5.9771 14 6 2.8238 -5.4687 6.7905 15 7 2.6234 -4.1760 6.7674 16 14 3.8845 -6.2254 8.1290 17 1 5.2985 -6.2648 7.6771 18 1 3.7822 -5.4069 9.3639 19 1 3.4161 -7.6063 8.4103 20 6 2.2957 -4.4985 4.1438 21 6 2.6103 -2.7475 0.0779 22 6 2.1107 -2.1774 -1.2448 23 6 3.0865 -2.6377 -2.3505 24 6 0.7349 -2.7604 -1.5801 25 6 2.0780 -0.6604 -1.2520 26 1 -0.3634 0.5629 0.8598 27 1 -0.3634 0.4632 -0.9174 28 1 -0.3634 -1.0260 0.0576 29 1 3.0795 1.5164 0.0297 30 1 1.6329 1.9669 -0.9045 31 1 1.5838 1.9823 0.8747 32 1 3.1209 -0.4386 1.3815 33 1 1.5307 -0.2206 2.1399 34 1 0.7739 -2.3853 1.1603 35 1 3.0274 -2.2814 3.0064 36 1 0.4574 -4.1737 1.3244 37 1 -0.4662 -6.3061 2.1274 38 1 0.3549 -7.3031 4.2153 39 1 3.0259 -3.6106 7.4451 40 1 3.0696 -3.9939 4.7031 41 1 3.6720 -2.5167 0.1958 42 1 2.4880 -3.8338 0.0748 43 1 3.1043 -3.7269 -2.3889 44 1 2.7564 -2.2459 -3.3126 45 1 4.0870 -2.2655 -2.1302 46 1 0.0292 -2.5041 -0.7899 47 1 0.3860 -2.3470 -2.5264 48 1 0.8101 -3.8446 -1.6626 49 1 1.4812 -0.3251 -2.1160 50 1 3.1010 -0.2880 -1.4269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313434708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:01 Heat of formation + Delta-G solvation = -27.957147 kcal Electronic energy + Delta-G solvation = -25552.630322 eV Core-core repulsion = 22349.013576 eV Total energy + Delta-G solvation = -3203.616746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.11867 -39.34592 -36.48902 -35.89353 -35.10887 -31.94014 -31.33893 -28.71037 -28.41578 -27.45520 -27.44575 -27.28643 -26.91270 -23.36648 -22.56683 -21.35685 -20.62754 -19.12963 -18.79373 -17.53652 -16.77211 -16.52764 -16.26330 -15.67155 -15.52555 -15.39203 -14.98239 -14.87964 -14.45038 -14.20900 -14.06028 -14.00559 -13.70355 -13.43579 -13.15217 -13.01602 -12.92077 -12.78596 -12.63982 -12.57110 -12.50413 -12.42263 -12.17706 -12.11311 -11.85772 -11.72267 -11.64206 -11.52442 -11.32567 -11.16852 -11.05938 -10.95740 -10.85881 -10.35546 -9.23567 -8.61356 -7.86205 -6.31291 1.09570 1.35542 1.37861 1.50792 1.59242 2.23013 2.78220 2.83799 3.64510 3.76094 3.86572 3.89619 4.09297 4.12909 4.23119 4.30018 4.43661 4.50215 4.52977 4.63078 4.74807 4.78923 4.80847 4.86932 4.88061 4.95256 4.96433 4.98776 5.02192 5.09127 5.10270 5.13952 5.14675 5.20379 5.21053 5.26480 5.32961 5.35381 5.44327 5.47208 5.52642 5.57840 5.58601 5.64623 5.67764 5.99024 6.13217 6.23146 6.29826 6.60188 6.96536 7.07330 7.09973 7.28578 8.39135 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.020068 B = 0.003671 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.904178 B = 7625.430267 C = 8192.734451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.141 4.141 4 C -0.107 4.107 5 C 0.164 3.836 6 N -0.754 5.754 7 C 0.226 3.774 8 C -0.298 4.298 9 C -0.063 4.063 10 C -0.287 4.287 11 C 0.110 3.890 12 C -0.506 4.506 13 H 0.070 0.930 14 C 0.038 3.962 15 N -0.823 5.823 16 Si 0.979 3.021 17 H -0.263 1.263 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.262 4.262 21 C -0.111 4.111 22 C -0.051 4.051 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.091 4.091 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.388 0.612 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.284 0.716 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.041 0.959 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.045 0.955 49 H 0.075 0.925 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 11.115 -15.580 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.049 4.049 3 C -0.198 4.198 4 C -0.146 4.146 5 C 0.060 3.940 6 N -0.384 5.384 7 C 0.124 3.876 8 C -0.321 4.321 9 C -0.082 4.082 10 C -0.308 4.308 11 C 0.107 3.893 12 C -0.536 4.536 13 H 0.088 0.912 14 C -0.176 4.176 15 N -0.449 5.449 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.192 1.192 19 H -0.184 1.184 20 C -0.286 4.286 21 C -0.150 4.150 22 C -0.051 4.051 23 C -0.199 4.199 24 C -0.201 4.201 25 C -0.128 4.128 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.221 0.779 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.176 11.385 -15.634 19.341 hybrid contribution 0.678 -0.469 1.299 1.538 sum 0.854 10.916 -14.336 18.038 Atomic orbital electron populations 1.22069 0.94403 1.01701 1.02077 1.20270 0.95692 0.95578 0.93405 1.22255 1.01065 0.94330 1.02173 1.21703 1.01438 0.93226 0.98190 1.20709 0.97532 0.92758 0.83025 1.44834 1.44976 1.22407 1.26176 1.17738 0.92054 0.85957 0.91816 1.20201 1.07192 1.00517 1.04188 1.20636 0.97705 0.94913 0.94933 1.20996 1.05075 1.03666 1.01042 1.17700 0.88605 0.91344 0.91688 1.19806 1.37024 0.95406 1.01347 0.91157 1.26693 0.95339 0.94849 1.00767 1.69930 1.35256 1.06415 1.33265 0.85264 0.78683 0.79337 0.76727 1.18809 1.19178 1.18359 1.20658 1.07774 1.01786 0.98378 1.21886 0.99375 0.99406 0.94366 1.20304 0.95837 0.95233 0.93745 1.22264 0.98597 1.00760 0.98286 1.22052 0.96113 1.00212 1.01700 1.21314 1.01820 0.92751 0.96908 0.93137 0.91157 0.93133 0.92642 0.91392 0.92910 0.91747 0.92628 0.91548 0.77860 0.87132 0.86614 0.89383 0.90515 0.88408 0.92851 0.93998 0.93517 0.91292 0.92830 0.92934 0.91150 0.93617 0.90647 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.00 72.02 0.58 -2.14 16 2 C -0.05 -0.92 0.71 -52.23 -0.04 -0.95 16 3 C -0.14 -2.21 8.06 72.49 0.58 -1.62 16 4 C -0.11 -2.63 3.96 30.32 0.12 -2.51 16 5 C 0.16 4.95 1.95 44.72 0.09 5.04 16 6 N -0.75 -29.04 5.23 -319.61 -1.67 -30.71 16 7 C 0.23 10.74 6.63 38.16 0.25 11.00 16 8 C -0.30 -13.52 8.94 22.59 0.20 -13.32 16 9 C -0.06 -2.95 10.02 22.20 0.22 -2.73 16 10 C -0.29 -15.17 9.79 22.75 0.22 -14.95 16 11 C 0.11 6.30 5.57 -21.31 -0.12 6.18 16 12 C -0.51 -28.94 9.05 23.46 0.21 -28.73 16 13 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 14 C 0.04 2.01 5.14 85.25 0.44 2.45 16 15 N -0.82 -44.75 10.96 21.82 0.24 -44.51 16 16 Si 0.98 39.97 29.59 68.60 2.03 42.00 16 17 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 18 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 20 C -0.26 -14.39 8.53 22.86 0.19 -14.19 16 21 C -0.11 -3.07 4.07 30.31 0.12 -2.94 16 22 C -0.05 -1.04 0.71 -52.23 -0.04 -1.08 16 23 C -0.14 -2.60 8.06 72.49 0.58 -2.02 16 24 C -0.14 -2.94 8.00 72.03 0.58 -2.37 16 25 C -0.09 -1.57 3.48 29.76 0.10 -1.46 16 26 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.07 1.06 8.07 -2.38 -0.02 1.04 16 28 H 0.05 1.07 4.72 -2.39 -0.01 1.06 16 29 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.53 8.10 -2.23 -0.02 1.51 16 33 H 0.05 1.47 8.12 -2.23 -0.02 1.45 16 34 H 0.07 2.17 4.36 -2.57 -0.01 2.16 16 35 H 0.39 14.62 8.60 -92.72 -0.80 13.82 16 36 H 0.11 4.43 6.20 -2.91 -0.02 4.41 16 37 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.28 13.98 8.30 -92.70 -0.77 13.21 16 40 H 0.10 5.62 6.17 -2.91 -0.02 5.60 16 41 H 0.05 1.49 8.10 -2.23 -0.02 1.48 16 42 H 0.04 1.37 7.86 -2.22 -0.02 1.35 16 43 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 0.96 8.08 -2.39 -0.02 0.94 16 46 H 0.05 1.16 4.73 -2.38 -0.01 1.15 16 47 H 0.07 1.15 8.07 -2.38 -0.02 1.13 16 48 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 1.09 7.88 -1.72 -0.01 1.08 16 50 H 0.06 1.04 7.62 -1.71 -0.01 1.02 16 Total: -1.00 -61.86 373.71 5.03 -56.83 By element: Atomic # 1 Polarization: 42.61 SS G_CDS: 0.12 Total: 42.73 kcal Atomic # 6 Polarization: -70.65 SS G_CDS: 4.31 Total: -66.34 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -1.43 Total: -75.22 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -61.86 5.03 -56.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.877 kcal (2) G-P(sol) polarization free energy of solvation -61.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds