Wall clock time and date at job start Tue Mar 31 2020 07:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00049 * 2 1 4 4 C 1.38229 * 120.00416 * 180.02562 * 3 2 1 5 5 C 1.38240 * 119.99866 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99967 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47223 * 60.00218 * 6 5 4 8 8 C 1.53001 * 109.47378 * 299.99943 * 6 5 4 9 9 C 1.53011 * 109.46851 * 180.02562 * 6 5 4 10 10 N 1.46893 * 109.46771 * 180.53477 * 9 6 5 11 11 C 1.46902 * 111.00281 * 89.57009 * 10 9 6 12 12 C 1.46906 * 111.00102 * 213.52260 * 10 9 6 13 13 C 1.52995 * 109.47565 * 162.96156 * 12 10 9 14 14 C 1.50703 * 115.55081 * 305.74407 * 13 12 10 15 15 H 1.07997 * 120.00351 * 113.74084 * 14 13 12 16 16 C 1.37876 * 119.99539 * 293.73704 * 14 13 12 17 17 N 1.31518 * 120.00331 * 144.94337 * 16 14 13 18 18 Si 1.86799 * 120.00154 * 324.94149 * 16 14 13 19 19 H 1.48499 * 109.46994 * 54.38520 * 18 16 14 20 20 H 1.48504 * 109.47340 * 174.38311 * 18 16 14 21 21 H 1.48499 * 109.47546 * 294.38353 * 18 16 14 22 22 C 1.52991 * 117.50190 * 160.06791 * 13 12 10 23 23 C 1.52999 * 117.49869 * 91.40482 * 13 12 10 24 24 C 1.38239 * 119.99746 * 0.25420 * 5 4 3 25 25 C 1.38235 * 120.00018 * 359.47034 * 24 5 4 26 26 H 1.08993 * 109.47260 * 89.99444 * 1 2 3 27 27 H 1.09007 * 109.46780 * 209.99527 * 1 2 3 28 28 H 1.09002 * 109.46993 * 329.99342 * 1 2 3 29 29 H 1.07999 * 120.00142 * 359.97438 * 3 2 1 30 30 H 1.07999 * 120.00824 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47127 * 190.05238 * 7 6 5 32 32 H 1.08997 * 109.47438 * 310.05855 * 7 6 5 33 33 H 1.09007 * 109.47081 * 70.05681 * 7 6 5 34 34 H 1.08997 * 109.47005 * 304.76262 * 8 6 5 35 35 H 1.09001 * 109.46593 * 64.75694 * 8 6 5 36 36 H 1.08995 * 109.47398 * 184.76134 * 8 6 5 37 37 H 1.08996 * 109.46895 * 60.53644 * 9 6 5 38 38 H 1.08994 * 109.46804 * 300.53262 * 9 6 5 39 39 H 1.09005 * 109.46641 * 67.14810 * 11 10 9 40 40 H 1.09001 * 109.47442 * 187.14636 * 11 10 9 41 41 H 1.08999 * 109.46840 * 307.14834 * 11 10 9 42 42 H 1.09000 * 109.47054 * 282.96909 * 12 10 9 43 43 H 1.09005 * 109.46653 * 42.96046 * 12 10 9 44 44 H 0.96997 * 120.00611 * 179.97438 * 17 16 14 45 45 H 1.09001 * 117.49767 * 359.97438 * 22 13 12 46 46 H 1.08999 * 117.50176 * 145.02360 * 22 13 12 47 47 H 1.08995 * 117.50369 * 214.98087 * 23 13 12 48 48 H 1.09001 * 117.49548 * 359.97438 * 23 13 12 49 49 H 1.08000 * 119.99740 * 179.72817 * 24 5 4 50 50 H 1.08003 * 119.99933 * 180.27571 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0001 -0.0028 7 6 6.2897 0.7208 1.2464 8 6 6.2878 0.7219 -1.2521 9 6 6.2888 -1.4425 -0.0045 10 7 7.7576 -1.4424 0.0073 11 6 8.2731 -1.4376 1.3829 12 6 8.2903 -2.5827 -0.7504 13 6 9.7633 -2.3328 -1.0800 14 6 10.0597 -1.0370 -1.7900 15 1 10.6351 -0.2691 -1.2945 16 6 9.5964 -0.8320 -3.0723 17 7 9.2169 0.3692 -3.4503 18 14 9.5077 -2.2603 -4.2729 19 1 8.7180 -3.3645 -3.6711 20 1 8.8541 -1.8116 -5.5286 21 1 10.8804 -2.7402 -4.5737 22 6 10.6231 -3.5468 -1.4372 23 6 10.8067 -2.8490 -0.0872 24 6 3.5805 -1.1971 -0.0075 25 6 2.1982 -1.1972 -0.0012 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1325 -0.0010 31 1 7.3647 0.8788 1.1605 32 1 5.7873 1.6834 1.3416 33 1 6.0810 0.1134 2.1272 34 1 5.8558 0.2601 -2.1399 35 1 5.9957 1.7712 -1.2097 36 1 7.3744 0.6487 -1.2966 37 1 5.9326 -1.9527 -0.8994 38 1 5.9183 -1.9598 0.8805 39 1 8.0269 -2.3830 1.8665 40 1 9.3555 -1.3098 1.3650 41 1 7.8195 -0.6165 1.9380 42 1 8.2004 -3.4899 -0.1528 43 1 7.7257 -2.6997 -1.6755 44 1 8.8912 0.5135 -4.3525 45 1 10.1394 -4.5237 -1.4370 46 1 11.4034 -3.4083 -2.1855 47 1 11.7077 -2.2517 0.0521 48 1 10.4437 -3.3662 0.8010 49 1 4.1206 -2.1324 -0.0127 50 1 1.6582 -2.1325 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191243607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:41 Heat of formation + Delta-G solvation = 56.756924 kcal Electronic energy + Delta-G solvation = -25742.837404 eV Core-core repulsion = 22542.894135 eV Total energy + Delta-G solvation = -3199.943269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.84429 -37.98023 -36.40223 -34.01524 -32.03688 -31.36468 -30.86749 -27.75432 -26.69073 -26.43609 -26.02909 -25.09163 -22.69555 -21.80020 -21.42450 -20.98000 -18.85891 -18.61387 -16.48288 -15.98635 -15.22572 -14.93632 -14.80411 -14.48111 -14.33742 -13.92633 -13.79888 -13.42471 -13.27674 -13.04916 -12.98055 -12.74894 -12.48212 -12.26018 -12.12817 -12.05898 -11.61802 -11.40107 -11.28368 -11.03835 -10.98734 -10.85976 -10.73641 -10.46006 -10.36522 -10.26925 -10.21718 -10.07379 -9.87270 -9.44100 -9.12830 -8.76511 -8.43591 -8.26419 -7.92089 -7.31752 -6.08978 -3.80751 1.51486 1.55798 3.39997 3.48282 3.53922 3.91136 4.50072 4.58443 4.88413 4.89893 5.02419 5.13344 5.20242 5.28350 5.30230 5.43157 5.49506 5.50304 5.63100 5.69398 5.79323 5.81243 5.86241 5.94778 6.00192 6.01776 6.10391 6.16949 6.22055 6.24140 6.27961 6.33854 6.36645 6.48116 6.51505 6.55015 6.61429 6.64952 6.68445 6.72393 6.75805 6.83547 6.88920 6.99564 7.18043 7.18863 7.24341 7.61658 7.86360 7.96423 8.06938 8.66650 9.10969 9.70914 11.02541 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.004256 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.131082 B = 6577.978428 C = 6998.125122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.121 4.121 4 C -0.110 4.110 5 C -0.059 4.059 6 C -0.017 4.017 7 C -0.134 4.134 8 C -0.127 4.127 9 C 0.066 3.934 10 N -0.499 5.499 11 C 0.019 3.981 12 C 0.099 3.901 13 C 0.030 3.970 14 C -0.483 4.483 15 H 0.071 0.929 16 C 0.105 3.895 17 N -0.853 5.853 18 Si 0.841 3.159 19 H -0.270 1.270 20 H -0.298 1.298 21 H -0.278 1.278 22 C -0.214 4.214 23 C -0.187 4.187 24 C -0.122 4.122 25 C -0.120 4.120 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.029 0.971 39 H 0.004 0.996 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.004 0.996 43 H 0.062 0.938 44 H 0.260 0.740 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.122 0.878 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 -1.086 8.534 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.139 4.139 4 C -0.128 4.128 5 C -0.060 4.060 6 C -0.017 4.017 7 C -0.191 4.191 8 C -0.184 4.184 9 C -0.063 4.063 10 N -0.221 5.221 11 C -0.129 4.129 12 C -0.028 4.028 13 C 0.029 3.971 14 C -0.519 4.519 15 H 0.089 0.911 16 C -0.101 4.101 17 N -0.486 5.486 18 Si 0.668 3.332 19 H -0.195 1.195 20 H -0.225 1.225 21 H -0.204 1.204 22 C -0.252 4.252 23 C -0.224 4.224 24 C -0.140 4.140 25 C -0.138 4.138 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.129 0.871 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.023 0.977 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.022 0.978 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.140 0.860 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.110 -0.503 8.156 15.448 hybrid contribution -0.354 -1.715 -0.501 1.821 sum -13.463 -2.218 7.655 15.645 Atomic orbital electron populations 1.20739 0.91724 1.02278 1.01958 1.19819 0.95662 0.93366 1.01554 1.20957 0.94215 0.97183 1.01511 1.20988 0.93737 0.97983 1.00140 1.20102 0.95930 0.92821 0.97116 1.19492 0.88339 0.96345 0.97550 1.22010 1.02514 0.98830 0.95709 1.21800 1.05828 0.96940 0.93876 1.22230 0.89304 0.95258 0.99501 1.61518 1.04615 1.43674 1.12316 1.22717 1.02032 0.98790 0.89345 1.21843 0.96983 0.88276 0.95733 1.19282 0.87296 0.93252 0.97291 1.19757 1.35861 0.97825 0.98428 0.91122 1.24637 0.92920 0.94196 0.98348 1.70264 1.36837 1.22935 1.18577 0.87499 0.78485 0.85818 0.81410 1.19471 1.22463 1.20426 1.23100 1.06078 0.97138 0.98863 1.22769 1.03021 1.04869 0.91733 1.21186 0.93908 0.98191 1.00711 1.20967 0.94228 0.97187 1.01460 0.91557 0.91936 0.91903 0.86578 0.86073 0.90328 0.93523 0.93696 0.94141 0.94583 0.87089 0.91879 0.95311 0.97711 0.90818 0.91239 0.97785 0.91952 0.93040 0.91805 0.89822 0.90053 0.91575 0.85981 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.10 -1.24 5.88 -104.62 -0.62 -1.86 16 3 C -0.12 -1.49 9.70 -39.59 -0.38 -1.88 16 4 C -0.11 -1.52 8.64 -39.58 -0.34 -1.87 16 5 C -0.06 -0.88 4.76 -104.62 -0.50 -1.38 16 6 C -0.02 -0.27 0.67 -155.65 -0.11 -0.37 16 7 C -0.13 -1.99 6.79 37.16 0.25 -1.74 16 8 C -0.13 -2.42 8.11 37.16 0.30 -2.12 16 9 C 0.07 1.11 2.91 -3.82 -0.01 1.10 16 10 N -0.50 -9.58 3.25 -242.91 -0.79 -10.37 16 11 C 0.02 0.33 8.54 60.07 0.51 0.84 16 12 C 0.10 2.08 4.76 -3.82 -0.02 2.06 16 13 C 0.03 0.69 0.76 -155.67 -0.12 0.57 16 14 C -0.48 -12.78 8.84 -34.44 -0.30 -13.08 16 15 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 16 C 0.10 2.83 5.36 -17.82 -0.10 2.74 16 17 N -0.85 -24.02 13.96 55.43 0.77 -23.25 16 18 Si 0.84 20.91 25.90 -169.99 -4.40 16.51 16 19 H -0.27 -6.55 6.86 56.52 0.39 -6.16 16 20 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.21 -4.55 8.22 -26.70 -0.22 -4.77 16 23 C -0.19 -3.76 8.57 -26.69 -0.23 -3.99 16 24 C -0.12 -1.71 8.98 -39.58 -0.36 -2.07 16 25 C -0.12 -1.51 9.70 -39.58 -0.38 -1.90 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.49 8.09 -51.92 -0.42 0.07 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.12 1.58 7.13 -52.49 -0.37 1.20 16 31 H 0.08 1.28 6.54 -51.93 -0.34 0.94 16 32 H 0.05 0.64 7.08 -51.93 -0.37 0.27 16 33 H 0.04 0.62 7.42 -51.92 -0.39 0.23 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 0.63 7.56 -51.93 -0.39 0.23 16 36 H 0.11 2.55 7.48 -51.93 -0.39 2.16 16 37 H 0.06 1.12 6.79 -51.93 -0.35 0.76 16 38 H 0.03 0.45 7.14 -51.93 -0.37 0.08 16 39 H 0.00 0.07 8.04 -51.93 -0.42 -0.35 16 40 H 0.07 1.34 6.60 -51.93 -0.34 1.00 16 41 H 0.07 1.07 4.37 -51.93 -0.23 0.84 16 42 H 0.00 0.08 7.91 -51.93 -0.41 -0.33 16 43 H 0.06 1.40 6.81 -51.93 -0.35 1.04 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.08 1.85 7.56 -51.93 -0.39 1.46 16 47 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.12 1.65 5.90 -52.49 -0.31 1.34 16 50 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -27.44 379.08 -9.75 -37.20 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.80 Total: 4.51 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -2.25 Total: -30.31 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.02 Total: -33.62 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.40 Total: 16.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.44 -9.75 -37.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191243607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.955 kcal (2) G-P(sol) polarization free energy of solvation -27.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds