Wall clock time and date at job start Tue Mar 31 2020 07:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00049 * 2 1 4 4 C 1.38229 * 120.00416 * 180.02562 * 3 2 1 5 5 C 1.38240 * 119.99866 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99967 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47223 * 60.00218 * 6 5 4 8 8 C 1.53001 * 109.47378 * 299.99943 * 6 5 4 9 9 C 1.53011 * 109.46851 * 180.02562 * 6 5 4 10 10 N 1.46893 * 109.46771 * 180.53477 * 9 6 5 11 11 C 1.46902 * 111.00281 * 89.57009 * 10 9 6 12 12 C 1.46906 * 111.00102 * 213.52260 * 10 9 6 13 13 C 1.52995 * 109.47565 * 162.96156 * 12 10 9 14 14 C 1.50703 * 115.55081 * 305.74407 * 13 12 10 15 15 H 1.07997 * 120.00351 * 113.74084 * 14 13 12 16 16 C 1.37876 * 119.99539 * 293.73704 * 14 13 12 17 17 N 1.31518 * 120.00331 * 144.94337 * 16 14 13 18 18 Si 1.86799 * 120.00154 * 324.94149 * 16 14 13 19 19 H 1.48499 * 109.46994 * 54.38520 * 18 16 14 20 20 H 1.48504 * 109.47340 * 174.38311 * 18 16 14 21 21 H 1.48499 * 109.47546 * 294.38353 * 18 16 14 22 22 C 1.52991 * 117.50190 * 160.06791 * 13 12 10 23 23 C 1.52999 * 117.49869 * 91.40482 * 13 12 10 24 24 C 1.38239 * 119.99746 * 0.25420 * 5 4 3 25 25 C 1.38235 * 120.00018 * 359.47034 * 24 5 4 26 26 H 1.08993 * 109.47260 * 89.99444 * 1 2 3 27 27 H 1.09007 * 109.46780 * 209.99527 * 1 2 3 28 28 H 1.09002 * 109.46993 * 329.99342 * 1 2 3 29 29 H 1.07999 * 120.00142 * 359.97438 * 3 2 1 30 30 H 1.07999 * 120.00824 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47127 * 190.05238 * 7 6 5 32 32 H 1.08997 * 109.47438 * 310.05855 * 7 6 5 33 33 H 1.09007 * 109.47081 * 70.05681 * 7 6 5 34 34 H 1.08997 * 109.47005 * 304.76262 * 8 6 5 35 35 H 1.09001 * 109.46593 * 64.75694 * 8 6 5 36 36 H 1.08995 * 109.47398 * 184.76134 * 8 6 5 37 37 H 1.08996 * 109.46895 * 60.53644 * 9 6 5 38 38 H 1.08994 * 109.46804 * 300.53262 * 9 6 5 39 39 H 1.09005 * 109.46641 * 67.14810 * 11 10 9 40 40 H 1.09001 * 109.47442 * 187.14636 * 11 10 9 41 41 H 1.08999 * 109.46840 * 307.14834 * 11 10 9 42 42 H 1.09000 * 109.47054 * 282.96909 * 12 10 9 43 43 H 1.09005 * 109.46653 * 42.96046 * 12 10 9 44 44 H 0.96997 * 120.00611 * 179.97438 * 17 16 14 45 45 H 1.09001 * 117.49767 * 359.97438 * 22 13 12 46 46 H 1.08999 * 117.50176 * 145.02360 * 22 13 12 47 47 H 1.08995 * 117.50369 * 214.98087 * 23 13 12 48 48 H 1.09001 * 117.49548 * 359.97438 * 23 13 12 49 49 H 1.08000 * 119.99740 * 179.72817 * 24 5 4 50 50 H 1.08003 * 119.99933 * 180.27571 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0001 -0.0028 7 6 6.2897 0.7208 1.2464 8 6 6.2878 0.7219 -1.2521 9 6 6.2888 -1.4425 -0.0045 10 7 7.7576 -1.4424 0.0073 11 6 8.2731 -1.4376 1.3829 12 6 8.2903 -2.5827 -0.7504 13 6 9.7633 -2.3328 -1.0800 14 6 10.0597 -1.0370 -1.7900 15 1 10.6351 -0.2691 -1.2945 16 6 9.5964 -0.8320 -3.0723 17 7 9.2169 0.3692 -3.4503 18 14 9.5077 -2.2603 -4.2729 19 1 8.7180 -3.3645 -3.6711 20 1 8.8541 -1.8116 -5.5286 21 1 10.8804 -2.7402 -4.5737 22 6 10.6231 -3.5468 -1.4372 23 6 10.8067 -2.8490 -0.0872 24 6 3.5805 -1.1971 -0.0075 25 6 2.1982 -1.1972 -0.0012 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1325 -0.0010 31 1 7.3647 0.8788 1.1605 32 1 5.7873 1.6834 1.3416 33 1 6.0810 0.1134 2.1272 34 1 5.8558 0.2601 -2.1399 35 1 5.9957 1.7712 -1.2097 36 1 7.3744 0.6487 -1.2966 37 1 5.9326 -1.9527 -0.8994 38 1 5.9183 -1.9598 0.8805 39 1 8.0269 -2.3830 1.8665 40 1 9.3555 -1.3098 1.3650 41 1 7.8195 -0.6165 1.9380 42 1 8.2004 -3.4899 -0.1528 43 1 7.7257 -2.6997 -1.6755 44 1 8.8912 0.5135 -4.3525 45 1 10.1394 -4.5237 -1.4370 46 1 11.4034 -3.4083 -2.1855 47 1 11.7077 -2.2517 0.0521 48 1 10.4437 -3.3662 0.8010 49 1 4.1206 -2.1324 -0.0127 50 1 1.6582 -2.1325 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191243607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:40 Heat of formation + Delta-G solvation = 44.783081 kcal Electronic energy + Delta-G solvation = -25743.356629 eV Core-core repulsion = 22542.894135 eV Total energy + Delta-G solvation = -3200.462493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97184 -39.41983 -37.85025 -35.37453 -34.11239 -32.38426 -31.86900 -29.15260 -28.23960 -27.66299 -27.24542 -26.96008 -23.90962 -23.10413 -22.85995 -22.19925 -20.68920 -19.85844 -18.17052 -17.38722 -16.74576 -16.32936 -15.97943 -15.83074 -15.72974 -15.41737 -14.98187 -14.72225 -14.63757 -14.32598 -14.31723 -14.11351 -14.05206 -13.66480 -13.38282 -13.04139 -12.95560 -12.95033 -12.72104 -12.51639 -12.41981 -12.29533 -12.14464 -12.08568 -12.01197 -11.85386 -11.59950 -11.55873 -11.33649 -11.18973 -10.84717 -10.21166 -9.95631 -9.75954 -9.27749 -8.75454 -8.20616 -5.92941 0.51096 0.56239 1.39089 1.44572 1.49854 2.50284 2.90645 2.94044 3.19268 3.52251 3.85675 3.95552 4.06848 4.15769 4.17660 4.21065 4.27267 4.38926 4.44916 4.54621 4.55980 4.60026 4.64811 4.65842 4.71620 4.80171 4.84825 4.87422 4.90219 4.91687 4.93467 5.01121 5.04759 5.12446 5.14971 5.21805 5.24797 5.27629 5.31126 5.37185 5.47865 5.50422 5.56864 5.63552 5.75734 5.84890 5.88810 5.96468 6.21004 6.44438 6.54334 6.62384 6.97789 7.58788 8.93759 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.018283 B = 0.004256 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.131082 B = 6577.978428 C = 6998.125122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.078 4.078 6 C -0.009 4.009 7 C -0.127 4.127 8 C -0.113 4.113 9 C 0.071 3.929 10 N -0.522 5.522 11 C 0.023 3.977 12 C 0.108 3.892 13 C 0.005 3.995 14 C -0.478 4.478 15 H 0.028 0.972 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.256 1.256 20 H -0.303 1.303 21 H -0.275 1.275 22 C -0.210 4.210 23 C -0.165 4.165 24 C -0.134 4.134 25 C -0.126 4.126 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.138 0.862 30 H 0.122 0.878 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.042 0.958 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.022 0.978 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.025 0.975 43 H 0.040 0.960 44 H 0.257 0.743 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.123 0.877 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.349 -2.730 10.025 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.078 4.078 6 C -0.009 4.009 7 C -0.184 4.184 8 C -0.171 4.171 9 C -0.057 4.057 10 N -0.245 5.245 11 C -0.125 4.125 12 C -0.020 4.020 13 C 0.004 3.996 14 C -0.514 4.514 15 H 0.046 0.954 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.715 3.285 19 H -0.181 1.181 20 H -0.231 1.231 21 H -0.201 1.201 22 C -0.248 4.248 23 C -0.202 4.202 24 C -0.152 4.152 25 C -0.144 4.144 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.112 0.888 49 H 0.141 0.859 50 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.260 -2.167 9.658 18.189 hybrid contribution 0.301 -1.124 -0.930 1.489 sum -14.959 -3.291 8.729 17.629 Atomic orbital electron populations 1.20797 0.89348 1.03588 1.02826 1.20234 0.97466 0.92884 0.99828 1.21255 0.93714 0.98538 1.00816 1.21106 0.94672 0.97656 1.00543 1.19969 0.94776 0.93817 0.99259 1.19339 0.89695 0.95538 0.96355 1.21919 1.01201 0.99603 0.95651 1.21581 1.02791 0.97762 0.94939 1.22194 0.87933 0.95829 0.99706 1.61439 1.06058 1.43425 1.13578 1.22690 1.01032 1.00290 0.88445 1.21644 0.95222 0.89694 0.95458 1.19222 0.89061 0.92193 0.99152 1.19793 1.34675 0.98655 0.98305 0.95371 1.25137 0.93137 0.95768 0.99585 1.70359 1.38777 1.24683 1.18631 0.86713 0.78537 0.83787 0.79473 1.18055 1.23082 1.20118 1.23095 1.05099 0.97350 0.99243 1.22773 1.01581 1.03692 0.92190 1.21291 0.94845 0.97851 1.01174 1.21255 0.93729 0.98531 1.00873 0.90772 0.90706 0.90622 0.84409 0.85992 0.92270 0.92457 0.92143 0.96133 0.93871 0.91280 0.93148 0.93334 0.95922 0.92454 0.89836 0.95706 0.94139 0.93335 0.89526 0.91029 0.90687 0.88787 0.85920 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.10 -2.21 5.88 -19.87 -0.12 -2.32 16 3 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 4 C -0.12 -3.23 8.64 22.27 0.19 -3.04 16 5 C -0.08 -2.25 4.76 -19.86 -0.09 -2.35 16 6 C -0.01 -0.28 0.67 -52.92 -0.04 -0.31 16 7 C -0.13 -3.70 6.79 71.98 0.49 -3.21 16 8 C -0.11 -4.51 8.11 71.98 0.58 -3.93 16 9 C 0.07 2.39 2.91 86.31 0.25 2.64 16 10 N -0.52 -19.98 3.25 -922.44 -3.00 -22.98 16 11 C 0.02 0.76 8.54 127.69 1.09 1.85 16 12 C 0.11 4.43 4.76 86.30 0.41 4.84 16 13 C 0.01 0.23 0.76 -52.93 -0.04 0.19 16 14 C -0.48 -26.12 8.84 25.60 0.23 -25.89 16 15 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 16 C 0.07 3.70 5.36 84.65 0.45 4.15 16 17 N -0.89 -52.43 13.96 21.45 0.30 -52.14 16 18 Si 0.89 43.71 25.90 68.60 1.78 45.49 16 19 H -0.26 -11.98 6.86 99.48 0.68 -11.30 16 20 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 C -0.21 -8.54 8.22 30.62 0.25 -8.28 16 23 C -0.17 -6.37 8.57 30.62 0.26 -6.11 16 24 C -0.13 -3.58 8.98 22.27 0.20 -3.38 16 25 C -0.13 -2.87 9.70 22.27 0.22 -2.66 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.90 8.09 -2.38 -0.02 0.89 16 28 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 29 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.12 3.10 7.13 -2.91 -0.02 3.08 16 31 H 0.06 1.95 6.54 -2.39 -0.02 1.94 16 32 H 0.06 1.53 7.08 -2.39 -0.02 1.51 16 33 H 0.06 1.57 7.42 -2.38 -0.02 1.55 16 34 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 36 H 0.07 3.36 7.48 -2.39 -0.02 3.34 16 37 H 0.05 1.79 6.79 -2.39 -0.02 1.78 16 38 H 0.05 1.43 7.14 -2.39 -0.02 1.41 16 39 H 0.02 0.66 8.04 -2.38 -0.02 0.64 16 40 H 0.06 2.05 6.60 -2.39 -0.02 2.03 16 41 H 0.08 2.47 4.37 -2.39 -0.01 2.46 16 42 H 0.02 0.91 7.91 -2.39 -0.02 0.89 16 43 H 0.04 1.81 6.81 -2.38 -0.02 1.79 16 44 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.07 3.08 7.56 -2.39 -0.02 3.06 16 47 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 48 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 49 H 0.12 3.17 5.90 -2.91 -0.02 3.15 16 50 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -61.13 379.08 5.21 -55.92 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.86 Total: 24.99 kcal Atomic # 6 Polarization: -56.55 SS G_CDS: 5.27 Total: -51.28 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -2.70 Total: -75.11 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.78 Total: 45.49 kcal Total: -61.13 5.21 -55.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191243607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.701 kcal (2) G-P(sol) polarization free energy of solvation -61.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds