Wall clock time and date at job start Tue Mar 31 2020 08:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47085 * 2 1 4 4 C 1.38256 * 120.00289 * 266.35230 * 3 2 1 5 5 C 1.38212 * 120.00504 * 180.02562 * 4 3 2 6 6 C 1.38261 * 119.99590 * 0.02562 * 5 4 3 7 7 C 1.38211 * 119.99971 * 0.25795 * 6 5 4 8 8 C 1.50699 * 120.00082 * 179.72502 * 7 6 5 9 9 C 1.38215 * 120.00011 * 86.33655 * 3 2 1 10 10 C 1.50700 * 119.99893 * 359.97438 * 9 3 2 11 11 N 1.46897 * 109.46992 * 98.60774 * 10 9 3 12 12 C 1.46896 * 111.00479 * 292.08366 * 11 10 9 13 13 C 1.50696 * 109.47376 * 168.84212 * 12 11 10 14 14 H 1.07999 * 120.00203 * 4.06433 * 13 12 11 15 15 C 1.37878 * 119.99826 * 184.07094 * 13 12 11 16 16 N 1.31510 * 120.00186 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99704 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47295 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47276 * 119.99755 * 17 15 13 20 20 H 1.48502 * 109.46721 * 239.99581 * 17 15 13 21 21 C 1.46902 * 110.99923 * 168.13218 * 11 10 9 22 22 C 1.54260 * 110.03228 * 55.46967 * 21 11 10 23 23 C 1.54961 * 104.16133 * 217.13472 * 22 21 11 24 24 C 1.54887 * 102.77651 * 37.89360 * 23 22 21 25 25 C 1.53875 * 110.03248 * 298.25344 * 21 11 10 26 26 H 1.09002 * 109.47192 * 300.00259 * 1 2 3 27 27 H 1.09003 * 109.47286 * 60.00153 * 1 2 3 28 28 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47192 * 239.99740 * 2 1 3 30 30 H 1.08996 * 109.46983 * 120.00084 * 2 1 3 31 31 H 1.08004 * 119.99771 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.00227 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99794 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47741 * 95.54471 * 8 7 6 35 35 H 1.09004 * 109.47434 * 215.54996 * 8 7 6 36 36 H 1.09005 * 109.47260 * 335.54625 * 8 7 6 37 37 H 1.09000 * 109.47365 * 218.60973 * 10 9 3 38 38 H 1.09001 * 109.46981 * 338.60732 * 10 9 3 39 39 H 1.08999 * 109.47286 * 288.84606 * 12 11 10 40 40 H 1.09008 * 109.46989 * 48.84329 * 12 11 10 41 41 H 0.97006 * 119.99771 * 180.02562 * 16 15 13 42 42 H 1.09003 * 110.01668 * 176.86402 * 21 11 10 43 43 H 1.08997 * 110.48895 * 335.78849 * 22 21 11 44 44 H 1.09006 * 110.48559 * 98.42788 * 22 21 11 45 45 H 1.08993 * 110.72691 * 279.57442 * 23 22 21 46 46 H 1.09010 * 110.92667 * 156.29415 * 23 22 21 47 47 H 1.08999 * 110.49141 * 203.40297 * 24 23 22 48 48 H 1.08998 * 110.60389 * 80.81585 * 24 23 22 49 49 H 1.08993 * 110.03484 * 238.57052 * 25 21 11 50 50 H 1.09002 * 110.03298 * 0.02562 * 25 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3346 2.0472 -1.1949 5 6 2.7958 3.3501 -1.1949 6 6 2.9554 4.0269 0.0002 7 6 2.6588 3.3987 1.1950 8 6 2.8386 4.1343 2.4979 9 6 2.1906 2.0978 1.1945 10 6 1.8602 1.4154 2.4969 11 7 3.0947 0.9091 3.1113 12 6 3.6641 -0.1900 2.3204 13 6 5.0530 -0.4991 2.8167 14 1 5.4462 0.0190 3.6789 15 6 5.8220 -1.4433 2.1700 16 7 5.3432 -2.0745 1.1203 17 14 7.5434 -1.8269 2.7856 18 1 7.8431 -0.9870 3.9731 19 1 7.6271 -3.2615 3.1597 20 1 8.5287 -1.5366 1.7132 21 6 2.8588 0.4913 4.4997 22 6 1.7193 -0.5472 4.5527 23 6 0.9522 -0.2023 5.8542 24 6 0.9936 1.3458 5.8762 25 6 2.3980 1.6943 5.3412 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.2111 1.5181 -2.1283 32 1 3.0323 3.8392 -2.1282 33 1 3.3162 5.0448 0.0002 34 1 1.8881 4.5725 2.8021 35 1 3.1795 3.4380 3.2643 36 1 3.5786 4.9244 2.3700 37 1 1.3851 2.1285 3.1706 38 1 1.1803 0.5843 2.3094 39 1 3.0362 -1.0750 2.4233 40 1 3.7099 0.1029 1.2714 41 1 5.8841 -2.7391 0.6656 42 1 3.7701 0.0675 4.9218 43 1 1.0667 -0.4420 3.6861 44 1 2.1258 -1.5573 4.6048 45 1 1.4634 -0.6148 6.7240 46 1 -0.0762 -0.5605 5.8065 47 1 0.8703 1.7164 6.8938 48 1 0.2238 1.7594 5.2248 49 1 3.0851 1.8539 6.1721 50 1 2.3490 2.5881 4.7192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237328320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:33 Heat of formation + Delta-G solvation = 7.734655 kcal Electronic energy + Delta-G solvation = -26521.839523 eV Core-core repulsion = 23319.770489 eV Total energy + Delta-G solvation = -3202.069034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84726 -38.24194 -34.81814 -33.95422 -32.69500 -31.64382 -29.48775 -28.41948 -27.40548 -27.13811 -26.05396 -24.25314 -23.18374 -21.81573 -20.57889 -19.99216 -19.80361 -18.36441 -16.44120 -16.11591 -15.56072 -15.22071 -15.04500 -14.48301 -14.39304 -13.69977 -13.59035 -13.35788 -13.29115 -12.91411 -12.80337 -12.59843 -12.33105 -12.11463 -11.80049 -11.66353 -11.51838 -11.44480 -11.15818 -11.04644 -10.89001 -10.76228 -10.66074 -10.61327 -10.56538 -10.35565 -10.32093 -10.18575 -10.03926 -9.86524 -9.62935 -9.04556 -8.36913 -8.05708 -8.03327 -7.08014 -5.97289 -3.96753 1.88342 1.90277 3.32821 3.40680 3.44980 4.18441 4.47702 4.93636 5.05079 5.11672 5.19592 5.26473 5.33577 5.37218 5.41379 5.50750 5.58056 5.71688 5.76486 5.80664 5.82544 5.88432 5.94772 5.98008 6.02642 6.03967 6.05581 6.08043 6.15801 6.19283 6.21852 6.24535 6.29624 6.33853 6.41300 6.49290 6.59387 6.64558 6.71093 6.76485 6.85111 6.94852 6.98274 7.09111 7.26325 7.41754 7.42170 7.56209 7.86387 8.18480 8.31846 8.62837 9.10089 9.66386 11.13225 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.007194 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.199970 B = 3891.276118 C = 5231.892982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.058 4.058 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.135 4.135 7 C -0.063 4.063 8 C -0.118 4.118 9 C -0.060 4.060 10 C 0.084 3.916 11 N -0.520 5.520 12 C 0.189 3.811 13 C -0.502 4.502 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.090 3.910 22 C -0.155 4.155 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.125 4.125 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.039 0.961 39 H -0.010 1.010 40 H 0.044 0.956 41 H 0.258 0.742 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 8.444 2.058 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C -0.059 4.059 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.153 4.153 7 C -0.063 4.063 8 C -0.175 4.175 9 C -0.061 4.061 10 C -0.043 4.043 11 N -0.243 5.243 12 C 0.064 3.936 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.212 1.212 21 C -0.019 4.019 22 C -0.194 4.194 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.163 4.163 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.007 0.993 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.957 8.692 1.936 13.358 hybrid contribution 0.583 -1.017 -0.012 1.173 sum -9.373 7.675 1.924 12.266 Atomic orbital electron populations 1.21741 0.95640 1.01161 1.01386 1.20803 0.95046 0.93154 1.04622 1.19719 0.97986 0.95567 0.92583 1.20889 1.01372 0.95086 0.97290 1.20937 1.00652 0.94999 0.97517 1.20884 1.02624 0.99509 0.92279 1.19636 0.97745 0.93998 0.94954 1.20897 1.00725 1.00035 0.95803 1.19521 0.98928 0.93326 0.94304 1.21090 0.93231 0.97645 0.92371 1.62375 1.23086 1.37685 1.01174 1.19869 0.93830 0.85827 0.94051 1.21195 0.99176 1.20264 1.13428 0.92131 1.24929 0.98115 0.96316 0.95075 1.69957 1.37091 1.26399 1.20140 0.86547 0.84853 0.77853 0.78794 1.19772 1.21267 1.21165 1.22262 0.97427 0.92257 0.89962 1.23039 0.98530 1.00811 0.97067 1.22437 0.99481 0.95651 0.98365 1.22370 0.97643 0.96108 1.00072 1.22367 0.95451 0.99376 0.99110 0.92935 0.93164 0.92774 0.91277 0.88913 0.86871 0.86963 0.86957 0.92394 0.89180 0.92491 0.91170 0.94278 0.99268 0.93758 0.93189 0.88994 0.91742 0.91651 0.91892 0.92554 0.92446 0.92289 0.92175 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.70 37.16 0.36 -1.67 16 2 C -0.10 -1.75 4.85 -27.88 -0.14 -1.89 16 3 C -0.06 -1.05 4.25 -104.62 -0.44 -1.50 16 4 C -0.13 -2.16 9.69 -39.58 -0.38 -2.54 16 5 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 6 C -0.13 -2.13 9.68 -39.58 -0.38 -2.51 16 7 C -0.06 -1.07 5.88 -104.63 -0.62 -1.68 16 8 C -0.12 -1.73 9.10 36.00 0.33 -1.40 16 9 C -0.06 -1.10 4.72 -104.62 -0.49 -1.59 16 10 C 0.08 1.49 3.09 -4.98 -0.02 1.47 16 11 N -0.52 -10.55 3.81 -228.18 -0.87 -11.42 16 12 C 0.19 4.68 3.14 -4.98 -0.02 4.67 16 13 C -0.50 -13.84 8.51 -34.44 -0.29 -14.13 16 14 H 0.06 1.67 7.09 -52.49 -0.37 1.30 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 C 0.09 1.64 2.83 -66.60 -0.19 1.45 16 22 C -0.16 -2.61 5.16 -25.04 -0.13 -2.74 16 23 C -0.12 -1.64 6.91 -24.70 -0.17 -1.81 16 24 C -0.12 -1.58 6.77 -25.07 -0.17 -1.75 16 25 C -0.13 -1.85 5.80 -25.61 -0.15 -2.00 16 26 H 0.05 0.73 7.27 -51.93 -0.38 0.36 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 30 H 0.09 1.89 4.04 -51.93 -0.21 1.68 16 31 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.45 4.81 -51.93 -0.25 1.20 16 36 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.07 1.12 5.32 -51.93 -0.28 0.85 16 38 H 0.04 0.70 3.47 -51.93 -0.18 0.52 16 39 H -0.01 -0.27 6.56 -51.93 -0.34 -0.61 16 40 H 0.04 1.20 5.36 -51.92 -0.28 0.92 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.09 1.91 6.75 -51.93 -0.35 1.56 16 43 H 0.06 1.11 5.63 -51.93 -0.29 0.82 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.07 1.08 4.70 -51.93 -0.24 0.83 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -29.09 366.36 -11.24 -40.33 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.21 Total: 4.75 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: -3.39 Total: -30.42 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.13 Total: -36.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.09 -11.24 -40.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237328320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.064 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds