Wall clock time and date at job start Tue Mar 31 2020 08:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46604 * 2 1 4 4 C 1.50693 * 109.47098 * 119.99976 * 2 1 3 5 5 C 1.38264 * 120.00235 * 299.97957 * 4 2 1 6 6 C 1.38208 * 119.99792 * 179.97438 * 5 4 2 7 7 C 1.38256 * 120.00452 * 0.12728 * 6 5 4 8 8 C 1.38215 * 119.99563 * 359.84833 * 7 6 5 9 9 C 1.50704 * 119.99598 * 180.36247 * 8 7 6 10 10 N 1.46895 * 109.47066 * 263.90058 * 9 8 7 11 11 C 1.46900 * 111.00050 * 199.97555 * 10 9 8 12 12 C 1.50694 * 109.47328 * 178.63781 * 11 10 9 13 13 H 1.08007 * 120.00122 * 353.99848 * 12 11 10 14 14 C 1.37884 * 120.00119 * 174.00494 * 12 11 10 15 15 N 1.31511 * 120.00066 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47402 * 89.99809 * 16 14 12 18 18 H 1.48505 * 109.46793 * 209.99844 * 16 14 12 19 19 H 1.48503 * 109.47406 * 329.99393 * 16 14 12 20 20 C 1.46900 * 111.00103 * 76.02695 * 10 9 8 21 21 C 1.54272 * 110.03602 * 217.89427 * 20 10 9 22 22 C 1.54956 * 104.16127 * 217.13773 * 21 20 10 23 23 C 1.54893 * 102.78235 * 37.88133 * 22 21 20 24 24 C 1.53876 * 110.03586 * 100.67275 * 20 10 9 25 25 C 1.38220 * 120.00088 * 120.00338 * 4 2 1 26 26 H 1.09003 * 109.47584 * 299.99852 * 1 2 3 27 27 H 1.08996 * 109.47508 * 60.00057 * 1 2 3 28 28 H 1.09003 * 109.46902 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46947 * 240.00059 * 2 1 3 30 30 H 1.09006 * 109.46577 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47629 * 299.99972 * 3 2 1 32 32 H 1.08996 * 109.47421 * 60.00349 * 3 2 1 33 33 H 1.07999 * 119.99467 * 0.02562 * 5 4 2 34 34 H 1.08006 * 119.99333 * 179.97438 * 6 5 4 35 35 H 1.07995 * 119.99850 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47237 * 23.90386 * 9 8 7 37 37 H 1.08998 * 109.46990 * 143.90095 * 9 8 7 38 38 H 1.09006 * 109.47508 * 298.63785 * 11 10 9 39 39 H 1.09004 * 109.46783 * 58.63761 * 11 10 9 40 40 H 0.96998 * 120.00275 * 179.97438 * 15 14 12 41 41 H 1.09004 * 110.01900 * 339.28143 * 20 10 9 42 42 H 1.09006 * 110.47923 * 335.78131 * 21 20 10 43 43 H 1.08997 * 110.48802 * 98.42146 * 21 20 10 44 44 H 1.09007 * 110.71615 * 279.56897 * 22 21 20 45 45 H 1.09001 * 110.92505 * 156.29486 * 22 21 20 46 46 H 1.08993 * 110.48269 * 203.40691 * 23 22 21 47 47 H 1.08999 * 110.59599 * 80.81879 * 23 22 21 48 48 H 1.08997 * 110.03480 * 238.57210 * 24 20 10 49 49 H 1.09000 * 110.02971 * 359.95594 * 24 20 10 50 50 H 1.08003 * 119.99400 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6987 -0.2378 2.4862 6 6 2.1590 -0.8897 3.6146 7 6 2.9552 -2.0128 3.4878 8 6 3.2883 -2.4855 2.2324 9 6 4.1495 -3.7145 2.0941 10 7 5.5496 -3.3125 1.9044 11 6 6.3334 -4.4012 1.3059 12 6 7.7531 -3.9415 1.0961 13 1 8.0217 -2.9131 1.2877 14 6 8.7093 -4.8338 0.6592 15 7 8.3824 -6.0861 0.4262 16 14 10.4692 -4.2641 0.3998 17 1 11.2372 -4.4399 1.6586 18 1 11.0962 -5.0692 -0.6791 19 1 10.4736 -2.8302 0.0135 20 6 6.1463 -2.8692 3.1714 21 6 7.0882 -1.6730 2.9222 22 6 8.2636 -1.9048 3.9049 23 6 8.4484 -3.4421 3.8616 24 6 7.0106 -3.9934 3.7690 25 6 2.8270 -1.8341 1.1036 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.0777 0.6403 2.5852 34 1 1.8987 -0.5202 4.5956 35 1 3.3152 -2.5219 4.3696 36 1 4.0646 -4.3210 2.9958 37 1 3.8184 -4.2951 1.2332 38 1 6.3256 -5.2637 1.9725 39 1 5.8960 -4.6791 0.3470 40 1 9.0549 -6.7138 0.1185 41 1 5.3626 -2.5870 3.8745 42 1 7.4456 -1.6772 1.8924 43 1 6.5810 -0.7348 3.1472 44 1 7.9971 -1.5759 4.9093 45 1 9.1648 -1.3976 3.5604 46 1 8.9339 -3.7936 4.7720 47 1 9.0263 -3.7343 2.9849 48 1 6.6467 -4.2563 4.7622 49 1 6.9865 -4.8682 3.1192 50 1 3.0876 -2.2033 0.1226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237458136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:31 Heat of formation + Delta-G solvation = 25.450922 kcal Electronic energy + Delta-G solvation = -25629.659039 eV Core-core repulsion = 22428.358240 eV Total energy + Delta-G solvation = -3201.300799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.62782 -38.48206 -35.60347 -34.10038 -32.65853 -30.91497 -29.73754 -27.98037 -27.18422 -27.12196 -26.80146 -24.08811 -22.92098 -21.97154 -21.57728 -19.85276 -19.22033 -18.05830 -16.61021 -16.35879 -15.58024 -15.22062 -15.08848 -14.64452 -14.32454 -13.87094 -13.81322 -13.64469 -13.42838 -13.08899 -12.96524 -12.41578 -12.37225 -12.08635 -11.94852 -11.90861 -11.72067 -11.23529 -11.16656 -11.04737 -10.90806 -10.79130 -10.62417 -10.49901 -10.45111 -10.36239 -10.20350 -10.06209 -9.90009 -9.48837 -9.14563 -8.76538 -8.48705 -8.37749 -8.31386 -7.10253 -6.01525 -3.97502 1.62989 1.70001 3.29995 3.38053 3.41176 4.00642 4.43646 4.71176 4.82889 5.02673 5.18626 5.21459 5.25087 5.33681 5.36920 5.42676 5.53949 5.55196 5.57256 5.67041 5.74475 5.76489 5.79897 5.85762 5.92403 6.04515 6.10590 6.16227 6.19560 6.21660 6.35948 6.36592 6.39255 6.42728 6.49392 6.62757 6.71316 6.73805 6.78836 6.85012 6.90742 6.99604 7.03854 7.09446 7.30295 7.39487 7.45247 7.65363 7.95917 8.12494 8.25442 8.59682 9.09138 9.62507 11.09817 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.004086 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.802395 B = 6851.355970 C = 7297.048213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.080 4.080 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.121 4.121 8 C -0.053 4.053 9 C 0.086 3.914 10 N -0.526 5.526 11 C 0.186 3.814 12 C -0.500 4.500 13 H 0.080 0.920 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.881 3.119 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.272 1.272 20 C 0.098 3.902 21 C -0.109 4.109 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.157 4.157 25 C -0.095 4.095 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.008 0.992 39 H 0.024 0.976 40 H 0.259 0.741 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.041 0.959 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.036 0.964 47 H 0.091 0.909 48 H 0.029 0.971 49 H 0.110 0.890 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 10.342 4.055 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.080 4.080 5 C -0.144 4.144 6 C -0.140 4.140 7 C -0.139 4.139 8 C -0.054 4.054 9 C -0.042 4.042 10 N -0.249 5.249 11 C 0.061 3.939 12 C -0.538 4.538 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.539 5.539 16 Si 0.710 3.290 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.010 4.010 21 C -0.147 4.147 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.195 4.195 25 C -0.113 4.113 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.109 0.891 48 H 0.048 0.952 49 H 0.128 0.872 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.245 10.550 3.651 16.570 hybrid contribution 1.063 -0.506 0.544 1.297 sum -11.181 10.043 4.195 15.604 Atomic orbital electron populations 1.21845 0.94725 1.01845 1.01505 1.20100 0.95539 0.96017 0.95833 1.21840 1.01591 0.95159 1.01405 1.19780 0.98078 0.95826 0.94343 1.20799 1.01408 1.00067 0.92118 1.20988 0.98732 0.96222 0.98060 1.21024 0.98863 0.97093 0.96960 1.19948 0.95753 0.96990 0.92673 1.21051 0.90451 0.92345 1.00322 1.62393 0.99219 1.39654 1.23649 1.19962 0.92763 0.87701 0.93451 1.21479 0.92550 0.96984 1.42811 0.90248 1.24909 0.98539 0.94869 0.96077 1.69942 1.33926 1.03225 1.46841 0.86761 0.85455 0.78918 0.77913 1.20565 1.21433 1.19694 1.22047 0.94819 0.94562 0.89605 1.22579 0.95012 0.95918 1.01175 1.22453 0.98182 0.97328 0.98182 1.22389 0.97626 0.93970 1.01201 1.22916 0.95452 1.02110 0.98978 1.20922 0.96803 0.94963 0.98625 0.92680 0.92691 0.92614 0.90465 0.92290 0.92711 0.92722 0.86936 0.86804 0.86797 0.94917 0.90741 0.97474 0.95765 0.93078 0.93024 0.88903 0.93998 0.93353 0.92843 0.94511 0.89064 0.95239 0.87187 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.01 37.16 0.33 -0.98 16 2 C -0.06 -0.62 3.09 -91.77 -0.28 -0.90 16 3 C -0.14 -1.43 9.01 37.16 0.33 -1.10 16 4 C -0.08 -1.06 4.78 -104.62 -0.50 -1.56 16 5 C -0.13 -1.57 8.71 -39.58 -0.34 -1.91 16 6 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 7 C -0.12 -1.76 8.60 -39.58 -0.34 -2.10 16 8 C -0.05 -0.85 5.13 -104.63 -0.54 -1.38 16 9 C 0.09 1.54 5.02 -4.98 -0.03 1.52 16 10 N -0.53 -10.83 4.36 -228.17 -1.00 -11.83 16 11 C 0.19 4.52 4.16 -4.98 -0.02 4.50 16 12 C -0.50 -12.84 5.23 -34.44 -0.18 -13.02 16 13 H 0.08 2.03 3.92 -52.48 -0.21 1.82 16 14 C 0.06 1.52 5.14 -17.82 -0.09 1.43 16 15 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 16 Si 0.88 20.93 28.51 -169.99 -4.85 16.08 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.10 1.91 2.72 -66.59 -0.18 1.73 16 21 C -0.11 -2.09 5.88 -25.03 -0.15 -2.24 16 22 C -0.12 -2.21 6.90 -24.70 -0.17 -2.38 16 23 C -0.11 -2.29 6.17 -25.07 -0.15 -2.44 16 24 C -0.16 -3.19 5.63 -25.61 -0.14 -3.34 16 25 C -0.09 -1.44 9.35 -39.59 -0.37 -1.81 16 26 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.52 7.39 -51.93 -0.38 0.13 16 33 H 0.11 1.18 7.10 -52.49 -0.37 0.80 16 34 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.11 1.58 7.46 -52.49 -0.39 1.18 16 36 H 0.03 0.57 7.90 -51.93 -0.41 0.16 16 37 H 0.07 1.33 7.84 -51.93 -0.41 0.92 16 38 H 0.01 0.21 5.83 -51.93 -0.30 -0.10 16 39 H 0.02 0.64 8.04 -51.93 -0.42 0.23 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 41 H 0.05 0.94 5.77 -51.93 -0.30 0.64 16 42 H 0.09 2.01 5.39 -51.93 -0.28 1.73 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 2.08 4.70 -51.93 -0.24 1.83 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.11 2.60 3.99 -51.93 -0.21 2.39 16 50 H 0.12 1.84 7.95 -52.48 -0.42 1.42 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -27.10 370.23 -11.24 -38.34 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.49 Total: 4.57 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -3.22 Total: -27.95 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.26 Total: -36.62 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.85 Total: 16.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.10 -11.24 -38.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237458136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.792 kcal (2) G-P(sol) polarization free energy of solvation -27.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds