Wall clock time and date at job start Tue Mar 31 2020 07:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.24746 * 2 1 4 4 C 1.52729 * 109.25452 * 119.46939 * 2 1 3 5 5 C 1.53325 * 108.39190 * 171.42270 * 4 2 1 6 6 C 1.52735 * 108.39600 * 290.16076 * 5 4 2 7 7 H 1.08994 * 109.25143 * 171.37971 * 6 5 4 8 8 N 1.46900 * 109.21985 * 290.83339 * 6 5 4 9 9 C 1.46901 * 110.99815 * 206.08753 * 8 6 5 10 10 C 1.52993 * 109.47259 * 179.97438 * 9 8 6 11 11 C 1.53009 * 109.47157 * 299.99431 * 10 9 8 12 12 C 1.53001 * 109.47549 * 59.99472 * 10 9 8 13 13 C 1.53005 * 109.47318 * 179.97438 * 10 9 8 14 14 C 1.50702 * 109.47323 * 179.97438 * 13 10 9 15 15 H 1.08002 * 119.99520 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00209 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99620 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 119.99998 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47406 * 90.00281 * 18 16 14 20 20 H 1.48503 * 109.47082 * 209.99912 * 18 16 14 21 21 H 1.48499 * 109.47333 * 330.00036 * 18 16 14 22 22 C 1.50635 * 110.59176 * 51.09539 * 6 5 4 23 23 C 1.38909 * 117.74927 * 162.33820 * 22 6 5 24 24 C 1.37941 * 120.54041 * 179.63792 * 23 22 6 25 25 C 1.38264 * 119.77356 * 359.93438 * 24 23 22 26 26 C 1.37936 * 119.76978 * 0.14228 * 25 24 23 27 27 C 1.37664 * 122.56549 * 342.42755 * 22 6 5 28 28 H 1.08998 * 109.47489 * 300.53264 * 1 2 3 29 29 H 1.09006 * 109.47131 * 60.52829 * 1 2 3 30 30 H 1.09001 * 109.47520 * 180.52991 * 1 2 3 31 31 H 1.09008 * 109.68084 * 51.70215 * 4 2 1 32 32 H 1.08995 * 109.71386 * 291.16375 * 4 2 1 33 33 H 1.08993 * 109.68214 * 170.43592 * 5 4 2 34 34 H 1.09002 * 109.70430 * 49.89922 * 5 4 2 35 35 H 1.00898 * 111.00376 * 82.13187 * 8 6 5 36 36 H 1.09002 * 109.46895 * 299.99431 * 9 8 6 37 37 H 1.09001 * 109.47640 * 59.99365 * 9 8 6 38 38 H 1.09006 * 109.46288 * 60.00008 * 11 10 9 39 39 H 1.08999 * 109.47079 * 179.97438 * 11 10 9 40 40 H 1.08994 * 109.46885 * 300.00426 * 11 10 9 41 41 H 1.09004 * 109.46624 * 59.99893 * 12 10 9 42 42 H 1.09002 * 109.47257 * 179.97438 * 12 10 9 43 43 H 1.08997 * 109.47074 * 300.00692 * 12 10 9 44 44 H 1.08992 * 109.46895 * 299.99628 * 13 10 9 45 45 H 1.09004 * 109.47161 * 59.99871 * 13 10 9 46 46 H 0.97002 * 119.99758 * 180.02562 * 17 16 14 47 47 H 1.08000 * 119.72901 * 359.65412 * 23 22 6 48 48 H 1.08000 * 120.10811 * 179.91637 * 24 23 22 49 49 H 1.07997 * 120.11542 * 180.11646 * 25 24 23 50 50 H 1.08002 * 119.72350 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8893 1.0291 0.0000 4 6 2.0336 -0.7093 1.2553 5 6 3.5513 -0.8895 1.1331 6 6 3.8277 -1.9254 0.0453 7 1 4.8976 -1.9534 -0.1608 8 7 3.3897 -3.2471 0.5135 9 6 4.1442 -4.3178 -0.1515 10 6 3.6616 -5.6760 0.3612 11 6 3.8838 -5.7589 1.8728 12 6 2.1711 -5.8365 0.0552 13 6 4.4470 -6.7913 -0.3320 14 6 3.9721 -8.1292 0.1735 15 1 3.1881 -8.1790 0.9147 16 6 4.5376 -9.2896 -0.3110 17 7 5.4918 -9.2288 -1.2139 18 14 3.9484 -10.9479 0.3151 19 1 2.8319 -11.4305 -0.5369 20 1 5.0675 -11.9226 0.2633 21 1 3.4773 -10.8090 1.7165 22 6 3.0874 -1.5761 -1.2192 23 6 3.5049 -2.1768 -2.4001 24 6 2.8632 -1.9040 -3.5903 25 6 1.7947 -1.0267 -3.6089 26 6 1.3797 -0.4280 -2.4376 27 6 2.0303 -0.6944 -1.2395 28 1 -0.3634 0.5221 0.8851 29 1 -0.3634 0.5056 -0.8947 30 1 -0.3634 -1.0276 0.0095 31 1 1.5542 -1.6843 1.3434 32 1 1.8051 -0.1071 2.1346 33 1 3.9573 -1.2375 2.0829 34 1 4.0135 0.0597 0.8620 35 1 2.3969 -3.3674 0.3797 36 1 3.9863 -4.2586 -1.2284 37 1 5.2061 -4.2038 0.0668 38 1 3.3239 -4.9643 2.3662 39 1 3.5395 -6.7264 2.2381 40 1 4.9456 -5.6445 2.0907 41 1 2.0130 -5.7775 -1.0216 42 1 1.8275 -6.8045 0.4201 43 1 1.6114 -5.0420 0.5487 44 1 4.2884 -6.7322 -1.4087 45 1 5.5090 -6.6772 -0.1143 46 1 5.8895 -10.0451 -1.5550 47 1 4.3386 -2.8632 -2.3861 48 1 3.1945 -2.3740 -4.5045 49 1 1.2871 -0.8106 -4.5373 50 1 0.5447 0.2569 -2.4529 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132360607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:33 Heat of formation + Delta-G solvation = -20.453392 kcal Electronic energy + Delta-G solvation = -25537.379343 eV Core-core repulsion = 22334.087984 eV Total energy + Delta-G solvation = -3203.291359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43394 -39.02562 -37.33133 -35.93843 -34.41474 -32.00019 -31.09975 -30.48113 -28.94273 -27.91027 -27.19976 -26.08553 -24.38361 -23.72191 -23.51920 -22.05147 -19.83600 -19.53395 -18.34596 -17.86380 -16.79438 -16.51593 -16.42303 -15.97791 -15.71714 -15.44765 -15.00831 -14.75696 -14.59986 -14.43604 -14.17977 -13.90883 -13.78553 -13.49966 -13.34525 -13.23664 -12.82588 -12.71760 -12.68135 -12.51132 -12.46067 -12.40823 -12.29283 -12.19831 -12.11507 -11.89378 -11.65266 -11.43022 -11.18887 -11.11059 -10.86784 -10.67227 -10.51092 -9.79139 -9.60135 -9.13162 -8.14426 -6.21534 0.42982 0.46440 1.40174 1.40770 1.51593 2.43301 2.80756 3.19482 3.37404 3.70324 3.74757 3.95324 4.04189 4.12246 4.14614 4.20913 4.29143 4.33369 4.37740 4.48286 4.51342 4.61670 4.70607 4.74107 4.80146 4.86873 4.95015 4.97324 4.99304 5.05991 5.06675 5.13354 5.17527 5.20043 5.20642 5.25507 5.38143 5.38868 5.50163 5.52907 5.55813 5.57970 5.62793 5.64154 5.66136 5.75662 5.86998 5.92074 6.11104 6.13044 6.36651 6.51154 6.93408 7.45815 8.98020 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.020111 B = 0.003597 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.915009 B = 7782.290035 C = 8332.712613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 H 0.091 0.909 4 C -0.109 4.109 5 C -0.101 4.101 6 C 0.124 3.876 7 H 0.070 0.930 8 N -0.660 5.660 9 C 0.077 3.923 10 C -0.053 4.053 11 C -0.106 4.106 12 C -0.119 4.119 13 C 0.042 3.958 14 C -0.514 4.514 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.067 4.067 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.341 0.659 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.048 0.952 43 H 0.063 0.937 44 H -0.019 1.019 45 H -0.016 1.016 46 H 0.259 0.741 47 H 0.105 0.895 48 H 0.125 0.875 49 H 0.141 0.859 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 22.591 1.433 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 H 0.109 0.891 4 C -0.147 4.147 5 C -0.139 4.139 6 C 0.014 3.986 7 H 0.088 0.912 8 N -0.290 5.290 9 C -0.052 4.052 10 C -0.053 4.053 11 C -0.163 4.163 12 C -0.176 4.176 13 C 0.004 3.996 14 C -0.552 4.552 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.580 5.580 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.119 4.119 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.068 4.068 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.082 0.918 44 H -0.001 1.001 45 H 0.002 0.998 46 H 0.068 0.932 47 H 0.123 0.877 48 H 0.143 0.857 49 H 0.159 0.841 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.402 22.481 1.928 24.444 hybrid contribution 0.134 -1.565 -1.397 2.102 sum -9.267 20.916 0.532 22.883 Atomic orbital electron populations 1.21895 0.93390 1.01915 1.02826 1.20095 0.96458 0.99145 0.91135 0.89106 1.21573 0.95124 1.00760 0.97241 1.21521 0.97051 0.97172 0.98114 1.20504 0.97652 0.89962 0.90454 0.91203 1.60925 1.09237 1.00285 1.58594 1.21958 0.97304 0.90762 0.95176 1.20471 0.95543 0.92911 0.96397 1.21495 0.99954 1.00419 0.94429 1.21647 0.95333 1.01134 0.99479 1.18983 0.93667 0.93350 0.93555 1.21616 1.19312 0.91716 1.22577 0.91624 1.25916 0.95369 1.03237 0.95524 1.70113 1.27633 1.28851 1.31357 0.85579 0.77770 0.79327 0.79205 1.20110 1.21198 1.18628 1.20459 0.97825 0.97956 0.95681 1.21392 1.00549 0.99774 0.93457 1.21284 0.97222 0.99254 0.97935 1.21366 0.96648 0.96812 0.99288 1.21514 1.00443 1.00715 0.91884 1.19903 0.94589 0.96216 0.96112 0.90966 0.91560 0.93486 0.92274 0.89869 0.90701 0.90909 0.83943 0.96170 0.92661 0.91279 0.94340 0.95025 0.95088 0.93328 0.91833 1.00102 0.99803 0.93181 0.87684 0.85673 0.84088 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.72 71.98 0.63 -1.26 16 2 C -0.05 -0.80 2.76 -11.65 -0.03 -0.83 16 3 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.84 5.23 30.61 0.16 -1.68 16 5 C -0.10 -1.96 5.62 30.61 0.17 -1.78 16 6 C 0.12 3.06 2.51 44.06 0.11 3.18 16 7 H 0.07 1.88 7.76 -2.39 -0.02 1.86 16 8 N -0.66 -18.68 5.16 -496.03 -2.56 -21.24 16 9 C 0.08 2.74 4.29 86.30 0.37 3.11 16 10 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 11 C -0.11 -4.08 8.06 71.99 0.58 -3.50 16 12 C -0.12 -4.48 7.89 71.98 0.57 -3.92 16 13 C 0.04 2.23 4.04 29.85 0.12 2.35 16 14 C -0.51 -28.92 7.65 25.60 0.20 -28.72 16 15 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 16 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 17 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 18 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 22 C -0.12 -2.94 5.02 -19.86 -0.10 -3.04 16 23 C -0.13 -3.68 8.54 22.36 0.19 -3.49 16 24 C -0.14 -3.42 10.05 22.21 0.22 -3.19 16 25 C -0.12 -2.53 10.05 22.20 0.22 -2.30 16 26 C -0.13 -2.46 9.04 22.36 0.20 -2.26 16 27 C -0.07 -1.42 5.44 -19.86 -0.11 -1.52 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.74 6.35 -2.38 -0.02 0.73 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 1.16 6.97 -2.38 -0.02 1.14 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 35 H 0.34 9.60 5.63 -89.70 -0.50 9.09 16 36 H 0.02 0.75 5.54 -2.39 -0.01 0.74 16 37 H 0.05 2.05 8.05 -2.39 -0.02 2.03 16 38 H 0.07 2.29 7.60 -2.38 -0.02 2.27 16 39 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 43 H 0.06 1.99 6.57 -2.39 -0.02 1.97 16 44 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 45 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 46 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 47 H 0.11 3.17 6.53 -2.91 -0.02 3.15 16 48 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 49 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 50 H 0.14 2.01 6.31 -2.91 -0.02 1.99 16 Total: -1.00 -64.34 372.30 4.09 -60.25 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.40 Total: 22.65 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 3.94 Total: -50.82 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -2.27 Total: -79.08 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.34 4.09 -60.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132360607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.797 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds