Wall clock time and date at job start Tue Mar 31 2020 07:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47203 * 2 1 4 4 C 1.53001 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.09010 * 109.46803 * 304.99706 * 4 3 2 6 6 C 1.53000 * 109.47314 * 64.99236 * 4 3 2 7 7 C 1.53000 * 109.47142 * 184.99646 * 4 3 2 8 8 H 1.08997 * 110.41972 * 302.30913 * 7 4 3 9 9 C 1.54903 * 110.37235 * 64.62553 * 7 4 3 10 10 C 1.55140 * 101.65441 * 155.89756 * 9 7 4 11 11 C 1.54315 * 103.01867 * 324.34600 * 10 9 7 12 12 N 1.47449 * 107.23157 * 22.28158 * 11 10 9 13 13 C 1.46908 * 110.99868 * 123.26127 * 12 11 10 14 14 C 1.50696 * 109.47353 * 69.86841 * 13 12 11 15 15 C 1.38639 * 119.74723 * 90.00113 * 14 13 12 16 16 C 1.37620 * 120.24897 * 180.27756 * 15 14 13 17 17 C 1.40715 * 119.74131 * 359.51904 * 16 15 14 18 18 C 1.41399 * 120.24183 * 180.22985 * 17 16 15 19 19 H 1.07996 * 120.00044 * 204.52621 * 18 17 16 20 20 C 1.39950 * 119.99773 * 24.53568 * 18 17 16 21 21 N 1.30821 * 119.99991 * 17.71280 * 20 18 17 22 22 Si 1.86800 * 119.99756 * 197.70913 * 20 18 17 23 23 H 1.48506 * 109.46742 * 59.99979 * 22 20 18 24 24 H 1.48505 * 109.46999 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47336 * 300.00007 * 22 20 18 26 26 C 1.40715 * 119.51261 * 0.47567 * 17 16 15 27 27 C 1.37609 * 119.74608 * 359.75586 * 26 17 16 28 28 H 1.09001 * 109.47382 * 300.00546 * 1 2 3 29 29 H 1.09002 * 109.46551 * 60.00464 * 1 2 3 30 30 H 1.08995 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47382 * 239.99454 * 2 1 3 32 32 H 1.09004 * 109.46882 * 119.99118 * 2 1 3 33 33 H 1.09001 * 109.47397 * 59.99464 * 3 2 1 34 34 H 1.09004 * 109.46481 * 299.99364 * 3 2 1 35 35 H 1.09002 * 109.47585 * 300.00422 * 6 4 3 36 36 H 1.09002 * 109.46526 * 60.00301 * 6 4 3 37 37 H 1.09003 * 109.47303 * 179.97438 * 6 4 3 38 38 H 1.08999 * 110.99447 * 37.80519 * 9 7 4 39 39 H 1.09005 * 111.02405 * 274.00315 * 9 7 4 40 40 H 1.08997 * 110.70737 * 205.96107 * 10 9 7 41 41 H 1.09005 * 110.70046 * 82.72369 * 10 9 7 42 42 H 1.08995 * 109.88705 * 262.87784 * 11 10 9 43 43 H 1.09000 * 110.02188 * 141.75918 * 11 10 9 44 44 H 1.09001 * 109.46946 * 309.86794 * 13 12 11 45 45 H 1.09000 * 109.46637 * 189.87162 * 13 12 11 46 46 H 1.08000 * 119.87572 * 359.97438 * 15 14 13 47 47 H 1.07993 * 120.12561 * 179.72165 * 16 15 14 48 48 H 0.97005 * 119.99803 * 180.02562 * 21 20 18 49 49 H 1.08003 * 120.12632 * 179.77502 * 26 17 16 50 50 H 1.08002 * 119.87647 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0796 0.8329 -1.3082 7 6 4.0801 2.8795 0.1250 8 1 3.6918 3.4933 -0.6877 9 6 3.6737 3.4781 1.4947 10 6 4.7485 4.5804 1.6862 11 6 6.0106 3.9473 1.0636 12 7 5.5583 2.9026 0.1265 13 6 6.0825 3.1445 -1.2244 14 6 7.5698 2.9022 -1.2371 15 6 8.0581 1.6367 -1.5236 16 6 9.4142 1.4025 -1.5324 17 6 10.3063 2.4559 -1.2590 18 6 11.7018 2.2282 -1.2700 19 1 12.3581 2.8701 -0.7011 20 6 12.2325 1.1713 -2.0182 21 7 11.5188 0.6162 -2.9638 22 14 13.9599 0.5532 -1.6669 23 1 14.0382 0.0742 -0.2634 24 1 14.2830 -0.5645 -2.5898 25 1 14.9314 1.6582 -1.8677 26 6 9.7993 3.7362 -0.9696 27 6 8.4393 3.9462 -0.9616 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.7162 -0.1908 -1.3978 36 1 3.7159 1.4225 -2.1498 37 1 5.1696 0.8333 -1.3089 38 1 3.7385 2.7284 2.2832 39 1 2.6742 3.9108 1.4513 40 1 4.9036 4.7877 2.7450 41 1 4.4690 5.4882 1.1515 42 1 6.6265 3.5027 1.8453 43 1 6.5821 4.7046 0.5270 44 1 5.8799 4.1758 -1.5134 45 1 5.5980 2.4680 -1.9286 46 1 7.3716 0.8305 -1.7360 47 1 9.7923 0.4150 -1.7515 48 1 11.8865 -0.1166 -3.4821 49 1 10.4749 4.5510 -0.7547 50 1 8.0479 4.9280 -0.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168123721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:44 Heat of formation + Delta-G solvation = -8.157427 kcal Electronic energy + Delta-G solvation = -24834.297398 eV Core-core repulsion = 21631.539232 eV Total energy + Delta-G solvation = -3202.758166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.51308 -37.41668 -36.04965 -33.91071 -32.30178 -32.05548 -29.53334 -29.13699 -27.80160 -26.49677 -26.25109 -23.71472 -22.42483 -21.10549 -20.85051 -20.59149 -19.48577 -19.43534 -17.24900 -16.11017 -15.47525 -15.32750 -15.24056 -14.37946 -14.22147 -13.79264 -13.69076 -13.57000 -13.33782 -12.90213 -12.72719 -12.54041 -12.47189 -12.29884 -12.10226 -11.87135 -11.65968 -11.46723 -11.35798 -11.17639 -11.03351 -10.94747 -10.85637 -10.82692 -10.65605 -10.56845 -10.44209 -10.27614 -10.15875 -10.01119 -9.47852 -9.27505 -9.07634 -7.83745 -7.37540 -7.23804 -6.71511 -4.29693 2.80376 3.08421 3.11242 3.13729 3.22998 3.96185 4.26127 4.66010 4.74260 4.80186 4.91213 4.94829 5.03393 5.14957 5.27661 5.37834 5.46657 5.58160 5.59872 5.68125 5.72462 5.78694 5.81302 5.81693 5.88080 5.92637 5.95244 5.97713 5.98880 6.08402 6.15139 6.19202 6.20472 6.30725 6.33593 6.42677 6.45375 6.54161 6.56609 6.66504 7.01856 7.11793 7.34660 7.39266 7.49589 7.59471 7.67490 7.94525 8.10876 8.21290 8.35953 8.70103 8.94926 9.03879 10.23053 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.003161 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.586113 B = 8856.928489 C = 9821.330027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.072 4.072 5 H 0.074 0.926 6 C -0.152 4.152 7 C 0.075 3.925 8 H 0.047 0.953 9 C -0.122 4.122 10 C -0.144 4.144 11 C 0.047 3.953 12 N -0.515 5.515 13 C 0.108 3.892 14 C -0.202 4.202 15 C -0.080 4.080 16 C -0.166 4.166 17 C 0.112 3.888 18 C -0.465 4.465 19 H 0.075 0.925 20 C 0.077 3.923 21 N -0.794 5.794 22 Si 0.906 3.094 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.228 4.228 27 C -0.085 4.085 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.116 0.884 48 H 0.280 0.720 49 H 0.089 0.911 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.540 1.116 5.186 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.091 4.091 5 H 0.093 0.907 6 C -0.209 4.209 7 C -0.034 4.034 8 H 0.065 0.935 9 C -0.160 4.160 10 C -0.183 4.183 11 C -0.081 4.081 12 N -0.239 5.239 13 C -0.018 4.018 14 C -0.203 4.203 15 C -0.099 4.099 16 C -0.185 4.185 17 C 0.109 3.891 18 C -0.495 4.495 19 H 0.093 0.907 20 C -0.141 4.141 21 N -0.420 5.420 22 Si 0.731 3.269 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.247 4.247 27 C -0.104 4.104 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.134 0.866 48 H 0.091 0.909 49 H 0.107 0.893 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.327 0.460 5.132 17.121 hybrid contribution 0.575 0.550 -0.249 0.834 sum -15.752 1.011 4.884 16.522 Atomic orbital electron populations 1.21780 0.96337 1.01280 1.01528 1.21572 0.95265 0.97265 1.02213 1.21677 0.95457 0.96511 1.01588 1.21038 0.93526 0.95451 0.99056 0.90738 1.22011 1.02905 0.99666 0.96326 1.22576 0.88951 0.95640 0.96198 0.93524 1.22722 0.97931 0.97842 0.97505 1.22818 0.96303 0.98045 1.01101 1.22767 0.95998 0.93115 0.96183 1.63572 1.05950 1.45876 1.08466 1.21072 0.94069 0.97709 0.88960 1.18850 0.91979 0.94876 1.14616 1.20465 0.95099 0.94670 0.99675 1.21295 0.91531 0.99443 1.06270 1.17599 0.93316 0.90245 0.87901 1.19547 0.92626 1.11595 1.25683 0.90655 1.25890 0.99781 0.95308 0.93112 1.69823 1.38221 1.19767 1.14158 0.86403 0.82151 0.78899 0.79455 1.18861 1.20380 1.19084 1.20917 0.93813 0.96548 1.13440 1.20347 0.93620 0.96033 1.00362 0.92993 0.92953 0.93043 0.91729 0.92128 0.92169 0.92418 0.93180 0.93600 0.90659 0.90834 0.91593 0.91255 0.92086 0.90976 0.92304 0.96218 0.90905 0.89628 0.86616 0.90917 0.89325 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.14 5.69 -26.73 -0.15 -1.30 16 3 C -0.11 -1.12 4.58 -26.73 -0.12 -1.24 16 4 C -0.07 -0.86 2.13 -90.62 -0.19 -1.05 16 5 H 0.07 0.98 8.13 -51.92 -0.42 0.55 16 6 C -0.15 -1.96 7.58 37.16 0.28 -1.68 16 7 C 0.07 0.97 2.10 -66.19 -0.14 0.83 16 8 H 0.05 0.62 7.81 -51.93 -0.41 0.22 16 9 C -0.12 -1.38 5.55 -24.59 -0.14 -1.51 16 10 C -0.14 -1.73 6.94 -24.91 -0.17 -1.90 16 11 C 0.05 0.72 6.26 -2.83 -0.02 0.70 16 12 N -0.51 -8.24 4.49 -224.82 -1.01 -9.25 16 13 C 0.11 1.93 4.13 -4.97 -0.02 1.91 16 14 C -0.20 -4.36 5.13 -104.33 -0.54 -4.90 16 15 C -0.08 -1.88 9.67 -39.66 -0.38 -2.27 16 16 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 17 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 18 C -0.46 -12.52 9.06 -37.74 -0.34 -12.87 16 19 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 20 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 21 N -0.79 -20.78 10.95 55.55 0.61 -20.17 16 22 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 23 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.23 -5.66 9.80 -38.88 -0.38 -6.04 16 27 C -0.08 -1.90 8.70 -39.66 -0.35 -2.25 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.56 7.11 -51.93 -0.37 0.19 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 36 H 0.04 0.57 7.95 -51.93 -0.41 0.16 16 37 H 0.07 1.16 5.56 -51.93 -0.29 0.88 16 38 H 0.07 0.83 8.05 -51.93 -0.42 0.42 16 39 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.96 5.47 -51.93 -0.28 0.68 16 44 H 0.02 0.34 7.90 -51.93 -0.41 -0.07 16 45 H 0.07 1.25 5.22 -51.93 -0.27 0.98 16 46 H 0.09 1.85 7.47 -52.49 -0.39 1.46 16 47 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 48 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 49 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 50 H 0.08 1.63 6.89 -52.49 -0.36 1.26 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -26.81 377.17 -11.87 -38.68 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.81 Total: 5.96 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: -3.31 Total: -34.79 kcal Atomic # 7 Polarization: -29.02 SS G_CDS: -0.40 Total: -29.43 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -26.81 -11.87 -38.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168123721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.519 kcal (2) G-P(sol) polarization free energy of solvation -26.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds