Wall clock time and date at job start Tue Mar 31 2020 07:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47203 * 2 1 4 4 C 1.53001 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.09010 * 109.46803 * 304.99706 * 4 3 2 6 6 C 1.53000 * 109.47314 * 64.99236 * 4 3 2 7 7 C 1.53000 * 109.47142 * 184.99646 * 4 3 2 8 8 H 1.08997 * 110.41972 * 302.30913 * 7 4 3 9 9 C 1.54903 * 110.37235 * 64.62553 * 7 4 3 10 10 C 1.55140 * 101.65441 * 155.89756 * 9 7 4 11 11 C 1.54315 * 103.01867 * 324.34600 * 10 9 7 12 12 N 1.47449 * 107.23157 * 22.28158 * 11 10 9 13 13 C 1.46908 * 110.99868 * 123.26127 * 12 11 10 14 14 C 1.50696 * 109.47353 * 69.86841 * 13 12 11 15 15 C 1.38639 * 119.74723 * 90.00113 * 14 13 12 16 16 C 1.37620 * 120.24897 * 180.27756 * 15 14 13 17 17 C 1.40715 * 119.74131 * 359.51904 * 16 15 14 18 18 C 1.41399 * 120.24183 * 180.22985 * 17 16 15 19 19 H 1.07996 * 120.00044 * 204.52621 * 18 17 16 20 20 C 1.39950 * 119.99773 * 24.53568 * 18 17 16 21 21 N 1.30821 * 119.99991 * 17.71280 * 20 18 17 22 22 Si 1.86800 * 119.99756 * 197.70913 * 20 18 17 23 23 H 1.48506 * 109.46742 * 59.99979 * 22 20 18 24 24 H 1.48505 * 109.46999 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47336 * 300.00007 * 22 20 18 26 26 C 1.40715 * 119.51261 * 0.47567 * 17 16 15 27 27 C 1.37609 * 119.74608 * 359.75586 * 26 17 16 28 28 H 1.09001 * 109.47382 * 300.00546 * 1 2 3 29 29 H 1.09002 * 109.46551 * 60.00464 * 1 2 3 30 30 H 1.08995 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47382 * 239.99454 * 2 1 3 32 32 H 1.09004 * 109.46882 * 119.99118 * 2 1 3 33 33 H 1.09001 * 109.47397 * 59.99464 * 3 2 1 34 34 H 1.09004 * 109.46481 * 299.99364 * 3 2 1 35 35 H 1.09002 * 109.47585 * 300.00422 * 6 4 3 36 36 H 1.09002 * 109.46526 * 60.00301 * 6 4 3 37 37 H 1.09003 * 109.47303 * 179.97438 * 6 4 3 38 38 H 1.08999 * 110.99447 * 37.80519 * 9 7 4 39 39 H 1.09005 * 111.02405 * 274.00315 * 9 7 4 40 40 H 1.08997 * 110.70737 * 205.96107 * 10 9 7 41 41 H 1.09005 * 110.70046 * 82.72369 * 10 9 7 42 42 H 1.08995 * 109.88705 * 262.87784 * 11 10 9 43 43 H 1.09000 * 110.02188 * 141.75918 * 11 10 9 44 44 H 1.09001 * 109.46946 * 309.86794 * 13 12 11 45 45 H 1.09000 * 109.46637 * 189.87162 * 13 12 11 46 46 H 1.08000 * 119.87572 * 359.97438 * 15 14 13 47 47 H 1.07993 * 120.12561 * 179.72165 * 16 15 14 48 48 H 0.97005 * 119.99803 * 180.02562 * 21 20 18 49 49 H 1.08003 * 120.12632 * 179.77502 * 26 17 16 50 50 H 1.08002 * 119.87647 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 1 3.9337 0.8529 0.8410 6 6 4.0796 0.8329 -1.3082 7 6 4.0801 2.8795 0.1250 8 1 3.6918 3.4933 -0.6877 9 6 3.6737 3.4781 1.4947 10 6 4.7485 4.5804 1.6862 11 6 6.0106 3.9473 1.0636 12 7 5.5583 2.9026 0.1265 13 6 6.0825 3.1445 -1.2244 14 6 7.5698 2.9022 -1.2371 15 6 8.0581 1.6367 -1.5236 16 6 9.4142 1.4025 -1.5324 17 6 10.3063 2.4559 -1.2590 18 6 11.7018 2.2282 -1.2700 19 1 12.3581 2.8701 -0.7011 20 6 12.2325 1.1713 -2.0182 21 7 11.5188 0.6162 -2.9638 22 14 13.9599 0.5532 -1.6669 23 1 14.0382 0.0742 -0.2634 24 1 14.2830 -0.5645 -2.5898 25 1 14.9314 1.6582 -1.8677 26 6 9.7993 3.7362 -0.9696 27 6 8.4393 3.9462 -0.9616 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.7162 -0.1908 -1.3978 36 1 3.7159 1.4225 -2.1498 37 1 5.1696 0.8333 -1.3089 38 1 3.7385 2.7284 2.2832 39 1 2.6742 3.9108 1.4513 40 1 4.9036 4.7877 2.7450 41 1 4.4690 5.4882 1.1515 42 1 6.6265 3.5027 1.8453 43 1 6.5821 4.7046 0.5270 44 1 5.8799 4.1758 -1.5134 45 1 5.5980 2.4680 -1.9286 46 1 7.3716 0.8305 -1.7360 47 1 9.7923 0.4150 -1.7515 48 1 11.8865 -0.1166 -3.4821 49 1 10.4749 4.5510 -0.7547 50 1 8.0479 4.9280 -0.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168123721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:43 Heat of formation + Delta-G solvation = -19.235726 kcal Electronic energy + Delta-G solvation = -24834.777789 eV Core-core repulsion = 21631.539232 eV Total energy + Delta-G solvation = -3203.238557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70790 -39.17447 -37.01052 -35.71093 -33.61591 -33.07269 -31.30449 -30.93577 -28.85734 -27.93387 -27.33435 -25.26851 -23.45771 -22.85874 -22.11431 -21.74211 -20.92700 -20.51062 -19.20111 -17.32439 -17.01940 -16.63009 -16.17333 -16.02331 -15.66826 -15.34681 -14.98244 -14.50127 -14.39184 -14.25642 -14.09654 -13.83495 -13.76737 -13.56262 -13.44537 -13.28937 -13.01722 -12.80070 -12.66118 -12.56816 -12.47942 -12.16170 -12.12082 -11.95298 -11.84554 -11.74512 -11.51258 -11.44554 -11.37719 -11.25007 -11.05823 -10.97390 -10.91563 -9.31919 -9.22595 -9.02583 -8.62029 -6.31087 0.98303 1.17544 1.36862 1.48178 1.53389 2.20841 2.70149 3.19380 3.73716 3.75716 3.86137 4.05132 4.10571 4.16267 4.24883 4.32108 4.34853 4.38608 4.51840 4.55402 4.57351 4.60377 4.66934 4.78264 4.80884 4.85219 4.95101 4.99115 5.01134 5.04703 5.06302 5.07732 5.12894 5.16906 5.19677 5.26879 5.32726 5.36185 5.39711 5.41083 5.47309 5.50659 5.62536 5.65080 5.73439 5.97701 6.12206 6.20071 6.35984 6.38084 6.41794 6.73415 6.96458 7.07039 8.34903 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.020262 B = 0.003161 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.586113 B = 8856.928489 C = 9821.330027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.067 4.067 5 H 0.061 0.939 6 C -0.149 4.149 7 C 0.074 3.926 8 H 0.050 0.950 9 C -0.114 4.114 10 C -0.136 4.136 11 C 0.042 3.958 12 N -0.530 5.530 13 C 0.117 3.883 14 C -0.188 4.188 15 C -0.085 4.085 16 C -0.189 4.189 17 C 0.079 3.921 18 C -0.505 4.505 19 H 0.072 0.928 20 C 0.035 3.965 21 N -0.827 5.827 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.266 1.266 25 H -0.259 1.259 26 C -0.244 4.244 27 C -0.084 4.084 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.028 0.972 45 H 0.079 0.921 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.287 0.713 49 H 0.093 0.907 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.642 1.686 5.888 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.144 4.144 4 C -0.086 4.086 5 H 0.080 0.920 6 C -0.206 4.206 7 C -0.034 4.034 8 H 0.068 0.932 9 C -0.152 4.152 10 C -0.174 4.174 11 C -0.086 4.086 12 N -0.254 5.254 13 C -0.010 4.010 14 C -0.190 4.190 15 C -0.104 4.104 16 C -0.209 4.209 17 C 0.077 3.923 18 C -0.534 4.534 19 H 0.091 0.909 20 C -0.180 4.180 21 N -0.453 5.453 22 Si 0.802 3.198 23 H -0.186 1.186 24 H -0.191 1.191 25 H -0.183 1.183 26 C -0.264 4.264 27 C -0.102 4.102 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.098 0.902 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.111 0.889 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.450 1.040 5.838 19.380 hybrid contribution 1.085 0.408 -0.459 1.247 sum -17.366 1.448 5.379 18.237 Atomic orbital electron populations 1.21757 0.95208 1.01771 1.01969 1.21564 0.96249 0.96754 1.01791 1.21605 0.93377 0.97097 1.02307 1.20998 0.95195 0.94551 0.97856 0.92037 1.21961 1.00929 1.00548 0.97209 1.22677 0.86756 0.96411 0.97571 0.93157 1.22714 0.98922 0.97487 0.96113 1.22770 0.94526 0.98320 1.01781 1.22763 0.97504 0.92671 0.95631 1.63443 1.08238 1.46429 1.07244 1.20941 0.91244 0.98331 0.90479 1.19284 0.94446 0.93697 1.11530 1.20681 0.94311 0.96108 0.99318 1.21248 0.92781 0.98706 1.08161 1.17938 0.93953 0.91300 0.89154 1.19790 0.92975 1.13403 1.27259 0.90950 1.26747 1.04124 0.94832 0.92273 1.69880 1.40250 1.20294 1.14851 0.85279 0.76673 0.78576 0.79320 1.18642 1.19073 1.18336 1.21126 0.95215 0.96076 1.13944 1.20635 0.92752 0.97528 0.99303 0.92376 0.92666 0.92612 0.92350 0.92440 0.91039 0.92004 0.92347 0.93096 0.93541 0.90872 0.89064 0.89881 0.91031 0.92793 0.93477 0.95386 0.90235 0.88233 0.88492 0.90230 0.88912 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.27 16 2 C -0.13 -2.03 5.69 30.60 0.17 -1.85 16 3 C -0.11 -1.78 4.58 30.60 0.14 -1.64 16 4 C -0.07 -1.48 2.13 -10.79 -0.02 -1.50 16 5 H 0.06 1.53 8.13 -2.38 -0.02 1.51 16 6 C -0.15 -3.68 7.58 71.98 0.55 -3.14 16 7 C 0.07 1.74 2.10 45.39 0.10 1.83 16 8 H 0.05 1.18 7.81 -2.39 -0.02 1.16 16 9 C -0.11 -2.20 5.55 31.98 0.18 -2.02 16 10 C -0.14 -2.85 6.94 31.77 0.22 -2.63 16 11 C 0.04 1.23 6.26 86.64 0.54 1.77 16 12 N -0.53 -16.25 4.49 -865.18 -3.89 -20.13 16 13 C 0.12 4.01 4.13 85.55 0.35 4.37 16 14 C -0.19 -8.13 5.13 -19.67 -0.10 -8.23 16 15 C -0.09 -4.10 9.67 22.22 0.21 -3.89 16 16 C -0.19 -10.40 8.70 22.73 0.20 -10.20 16 17 C 0.08 4.44 5.57 -21.29 -0.12 4.32 16 18 C -0.50 -28.37 9.06 23.46 0.21 -28.16 16 19 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 20 C 0.03 1.82 5.14 85.26 0.44 2.26 16 21 N -0.83 -44.76 10.95 21.83 0.24 -44.52 16 22 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 26 C -0.24 -12.47 9.80 22.73 0.22 -12.24 16 27 C -0.08 -3.74 8.70 22.22 0.19 -3.55 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 1.00 6.56 -2.39 -0.02 0.99 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.07 1.06 7.11 -2.39 -0.02 1.04 16 34 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.06 1.31 6.56 -2.39 -0.02 1.30 16 36 H 0.05 1.18 7.95 -2.39 -0.02 1.16 16 37 H 0.05 1.41 5.56 -2.39 -0.01 1.40 16 38 H 0.07 1.44 8.05 -2.39 -0.02 1.42 16 39 H 0.09 1.35 7.92 -2.38 -0.02 1.33 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 1.47 5.47 -2.39 -0.01 1.46 16 44 H 0.03 0.92 7.90 -2.39 -0.02 0.90 16 45 H 0.08 2.63 5.22 -2.39 -0.01 2.62 16 46 H 0.10 4.40 7.47 -2.91 -0.02 4.38 16 47 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 48 H 0.29 14.07 8.30 -92.70 -0.77 13.30 16 49 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 50 H 0.11 4.21 6.89 -2.91 -0.02 4.19 16 Total: -1.00 -60.02 377.17 3.47 -56.55 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.89 Total: 32.30 kcal Atomic # 6 Polarization: -69.98 SS G_CDS: 4.20 Total: -65.78 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -3.65 Total: -64.65 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -60.02 3.47 -56.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168123721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.316 kcal (2) G-P(sol) polarization free energy of solvation -60.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds