Wall clock time and date at job start Tue Mar 31 2020 07:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46942 * 2 1 4 4 C 1.53001 * 109.46807 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47409 * 57.30441 * 4 3 2 6 6 C 1.53002 * 109.47207 * 297.29666 * 4 3 2 7 7 C 1.53001 * 109.46904 * 177.30494 * 4 3 2 8 8 H 1.09006 * 110.33379 * 67.79147 * 7 4 3 9 9 C 1.54904 * 110.37495 * 190.16939 * 7 4 3 10 10 C 1.55146 * 101.65349 * 155.89796 * 9 7 4 11 11 C 1.54314 * 103.01704 * 324.34181 * 10 9 7 12 12 N 1.47442 * 107.23598 * 22.29024 * 11 10 9 13 13 C 1.46900 * 111.00412 * 123.25459 * 12 11 10 14 14 C 1.50697 * 109.47201 * 55.57015 * 13 12 11 15 15 C 1.38635 * 119.74879 * 269.73028 * 14 13 12 16 16 C 1.37624 * 120.24759 * 179.71852 * 15 14 13 17 17 C 1.40712 * 119.74131 * 0.57148 * 16 15 14 18 18 C 1.41399 * 120.24536 * 179.67773 * 17 16 15 19 19 H 1.08005 * 119.99480 * 28.63499 * 18 17 16 20 20 C 1.39935 * 120.00221 * 208.63498 * 18 17 16 21 21 N 1.30825 * 120.00474 * 10.77866 * 20 18 17 22 22 Si 1.86806 * 119.99968 * 190.77374 * 20 18 17 23 23 H 1.48504 * 109.46695 * 90.00018 * 22 20 18 24 24 H 1.48496 * 109.47575 * 210.00278 * 22 20 18 25 25 H 1.48503 * 109.47120 * 330.00292 * 22 20 18 26 26 C 1.40714 * 119.51337 * 359.70420 * 17 16 15 27 27 C 1.37617 * 119.74517 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.47326 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47338 * 299.99329 * 1 2 3 30 30 H 1.09001 * 109.47617 * 60.00199 * 1 2 3 31 31 H 1.09005 * 109.47150 * 240.00157 * 2 1 3 32 32 H 1.08993 * 109.47505 * 120.00078 * 2 1 3 33 33 H 1.08993 * 109.47084 * 300.00336 * 3 2 1 34 34 H 1.09005 * 109.47069 * 60.00108 * 3 2 1 35 35 H 1.08996 * 109.47224 * 305.73817 * 6 4 3 36 36 H 1.09000 * 109.46398 * 65.73706 * 6 4 3 37 37 H 1.09003 * 109.47036 * 185.73167 * 6 4 3 38 38 H 1.09005 * 110.98784 * 273.98510 * 9 7 4 39 39 H 1.08995 * 110.98982 * 37.80177 * 9 7 4 40 40 H 1.09005 * 110.70345 * 205.96256 * 10 9 7 41 41 H 1.08995 * 110.85757 * 82.80098 * 10 9 7 42 42 H 1.08995 * 109.89292 * 262.87871 * 11 10 9 43 43 H 1.09003 * 110.01943 * 141.76351 * 11 10 9 44 44 H 1.09002 * 109.47014 * 175.57149 * 13 12 11 45 45 H 1.09000 * 109.46894 * 295.57072 * 13 12 11 46 46 H 1.07997 * 119.87563 * 359.97438 * 15 14 13 47 47 H 1.07999 * 120.12467 * 180.27466 * 16 15 14 48 48 H 0.96998 * 120.00027 * 179.97438 * 21 20 18 49 49 H 1.08004 * 120.12656 * 180.02562 * 26 17 16 50 50 H 1.08003 * 119.87366 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9329 0.8876 -0.8657 6 6 4.0805 0.7808 1.2809 7 6 4.0799 2.8835 -0.0685 8 1 3.8423 3.4132 0.8541 9 6 5.6071 2.9035 -0.3267 10 6 5.7978 4.3021 -0.9704 11 6 4.5120 4.4788 -1.8052 12 7 3.4913 3.5836 -1.2301 13 6 2.2915 4.3356 -0.8391 14 6 1.7715 5.1045 -2.0263 15 6 2.2181 6.3962 -2.2585 16 6 1.7544 7.1056 -3.3428 17 6 0.8144 6.5194 -4.2104 18 6 0.3257 7.2411 -5.3238 19 1 0.9420 7.9946 -5.7916 20 6 -0.9564 6.9791 -5.8195 21 7 -1.7807 6.2268 -5.1368 22 14 -1.4911 7.7035 -7.4563 23 1 -1.1453 6.7615 -8.5510 24 1 -2.9587 7.9289 -7.4422 25 1 -0.7939 8.9961 -7.6769 26 6 0.3638 5.2097 -3.9616 27 6 0.8463 4.5166 -2.8749 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6765 1.9564 0.8900 35 1 3.6361 1.2730 2.1459 36 1 3.8034 -0.2734 1.2806 37 1 5.1657 0.8712 1.3290 38 1 6.1622 2.8249 0.6081 39 1 5.8965 2.1125 -1.0185 40 1 6.6787 4.3141 -1.6123 41 1 5.8698 5.0750 -0.2052 42 1 4.7030 4.2052 -2.8428 43 1 4.1711 5.5127 -1.7512 44 1 1.5256 3.6424 -0.4913 45 1 2.5433 5.0306 -0.0381 46 1 2.9357 6.8460 -1.5884 47 1 2.1070 8.1102 -3.5244 48 1 -2.6695 6.0455 -5.4803 49 1 -0.3572 4.7500 -4.6213 50 1 0.5016 3.5115 -2.6817 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168123723.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:47 Heat of formation + Delta-G solvation = -5.005762 kcal Electronic energy + Delta-G solvation = -25134.712600 eV Core-core repulsion = 21932.091101 eV Total energy + Delta-G solvation = -3202.621500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.55520 -37.43883 -35.89965 -33.94835 -32.39875 -31.85178 -29.54761 -29.24198 -27.63767 -26.48450 -26.22938 -23.70653 -22.56586 -21.15049 -20.78755 -20.42913 -19.47065 -19.35672 -17.26327 -16.07378 -15.43566 -15.26372 -15.16979 -14.42000 -14.12489 -14.03391 -13.75163 -13.38580 -13.32182 -12.87192 -12.61514 -12.51401 -12.26444 -12.17798 -11.98579 -11.83812 -11.81000 -11.47418 -11.37439 -11.26288 -11.10124 -10.94564 -10.85430 -10.70663 -10.68105 -10.46413 -10.36604 -10.24752 -10.03700 -9.95107 -9.49008 -9.27457 -9.16005 -7.83202 -7.39602 -7.20896 -6.66686 -4.33269 2.77592 3.08627 3.10214 3.12890 3.19959 3.97090 4.32688 4.67309 4.70988 4.84136 5.06032 5.12821 5.14299 5.21384 5.31074 5.42508 5.50675 5.56120 5.64847 5.72553 5.78668 5.80470 5.83801 5.89896 5.91693 5.94494 5.99822 6.02167 6.07953 6.11345 6.19955 6.22620 6.28727 6.32399 6.38142 6.42043 6.49098 6.54930 6.57955 6.67302 6.98953 7.12353 7.32434 7.37890 7.49244 7.59879 7.66169 7.90542 8.10065 8.17101 8.34511 8.69359 8.94447 9.01410 10.27276 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.003674 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.923785 B = 7619.585565 C = 8917.103952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.119 4.119 4 C -0.072 4.072 5 H 0.073 0.927 6 C -0.147 4.147 7 C 0.074 3.926 8 H 0.047 0.953 9 C -0.122 4.122 10 C -0.144 4.144 11 C 0.040 3.960 12 N -0.515 5.515 13 C 0.107 3.893 14 C -0.202 4.202 15 C -0.089 4.089 16 C -0.222 4.222 17 C 0.111 3.889 18 C -0.465 4.465 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.803 5.803 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.159 4.159 27 C -0.082 4.082 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.019 0.981 46 H 0.083 0.917 47 H 0.090 0.910 48 H 0.278 0.722 49 H 0.119 0.881 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -9.194 9.688 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.091 4.091 5 H 0.091 0.909 6 C -0.205 4.205 7 C -0.034 4.034 8 H 0.065 0.935 9 C -0.160 4.160 10 C -0.183 4.183 11 C -0.087 4.087 12 N -0.239 5.239 13 C -0.019 4.019 14 C -0.203 4.203 15 C -0.108 4.108 16 C -0.242 4.242 17 C 0.109 3.891 18 C -0.496 4.496 19 H 0.093 0.907 20 C -0.142 4.142 21 N -0.429 5.429 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.178 4.178 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.037 0.963 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.137 0.863 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.180 -9.629 9.311 15.695 hybrid contribution -0.143 1.026 -0.100 1.041 sum 8.037 -8.603 9.212 14.949 Atomic orbital electron populations 1.21780 0.96189 1.01052 1.02052 1.21566 0.95601 0.97504 1.01366 1.21824 0.94804 0.96234 1.02747 1.21047 0.95633 0.94725 0.97702 0.90905 1.21895 1.00594 1.00399 0.97623 1.22614 0.93080 0.94859 0.92897 0.93464 1.22724 0.95551 0.97442 1.00244 1.22813 0.99068 0.96887 0.99499 1.22856 0.89569 0.97611 0.98680 1.63606 1.05375 1.27850 1.27056 1.21103 0.91793 0.94499 0.94548 1.18917 1.05296 0.95476 1.00657 1.20357 0.98806 0.94290 0.97338 1.20975 1.06383 0.98898 0.97933 1.17623 0.89399 0.91108 0.90981 1.19578 0.99333 1.18687 1.11956 0.90693 1.25863 0.96407 0.94001 0.97960 1.69795 1.06593 1.30515 1.35995 0.86297 0.78033 0.80182 0.82065 1.19388 1.20362 1.18759 1.21368 1.03059 0.94656 0.98741 1.20496 0.96693 0.97443 0.95460 0.93301 0.93034 0.92392 0.92302 0.92552 0.89725 0.92877 0.93092 0.92624 0.93002 0.91657 0.90885 0.91330 0.92122 0.91099 0.91196 0.90709 0.96309 0.89905 0.89221 0.91066 0.86347 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.15 0.37 -1.32 16 2 C -0.12 -1.35 5.64 -26.73 -0.15 -1.50 16 3 C -0.12 -1.48 3.36 -26.73 -0.09 -1.57 16 4 C -0.07 -0.85 2.18 -90.62 -0.20 -1.04 16 5 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16 6 C -0.15 -1.42 8.69 37.16 0.32 -1.09 16 7 C 0.07 0.96 2.11 -66.18 -0.14 0.82 16 8 H 0.05 0.64 7.72 -51.93 -0.40 0.24 16 9 C -0.12 -1.39 5.78 -24.59 -0.14 -1.54 16 10 C -0.14 -1.79 6.94 -24.91 -0.17 -1.96 16 11 C 0.04 0.64 6.21 -2.84 -0.02 0.62 16 12 N -0.52 -8.20 4.44 -224.81 -1.00 -9.20 16 13 C 0.11 1.89 4.46 -4.98 -0.02 1.87 16 14 C -0.20 -4.32 4.82 -104.33 -0.50 -4.82 16 15 C -0.09 -1.97 8.05 -39.66 -0.32 -2.29 16 16 C -0.22 -5.45 9.80 -38.87 -0.38 -5.83 16 17 C 0.11 2.98 5.55 -106.83 -0.59 2.38 16 18 C -0.47 -12.48 9.06 -37.74 -0.34 -12.82 16 19 H 0.07 1.94 7.87 -52.48 -0.41 1.53 16 20 C 0.07 1.88 5.25 -17.35 -0.09 1.79 16 21 N -0.80 -21.01 10.83 55.55 0.60 -20.41 16 22 Si 0.91 18.98 29.57 -169.99 -5.03 13.95 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.16 -4.14 8.66 -38.87 -0.34 -4.48 16 27 C -0.08 -1.91 9.67 -39.66 -0.38 -2.29 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.56 6.63 -51.93 -0.34 0.21 16 33 H 0.08 1.27 5.86 -51.93 -0.30 0.97 16 34 H 0.05 0.66 8.00 -51.93 -0.42 0.25 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.49 6.80 -51.93 -0.35 0.14 16 37 H 0.05 0.46 7.33 -51.93 -0.38 0.08 16 38 H 0.06 0.65 7.96 -51.93 -0.41 0.23 16 39 H 0.07 0.83 7.96 -51.93 -0.41 0.42 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.20 4.52 -51.93 -0.23 0.97 16 44 H 0.07 1.28 5.21 -51.93 -0.27 1.01 16 45 H 0.02 0.33 7.94 -51.93 -0.41 -0.08 16 46 H 0.08 1.64 7.03 -52.49 -0.37 1.27 16 47 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 48 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 49 H 0.12 3.22 6.21 -52.48 -0.33 2.89 16 50 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -26.51 376.93 -11.76 -38.28 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.83 Total: 6.78 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: -3.19 Total: -35.08 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: -0.40 Total: -29.61 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -26.51 -11.76 -38.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168123723.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.270 kcal (2) G-P(sol) polarization free energy of solvation -26.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds