Wall clock time and date at job start Tue Mar 31 2020 07:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47167 * 2 1 4 4 C 1.52998 * 109.47167 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47072 * 179.71117 * 4 3 2 6 6 C 1.46894 * 110.99871 * 288.18935 * 5 4 3 7 7 C 1.50701 * 109.47257 * 160.35423 * 6 5 4 8 8 H 1.08003 * 119.99936 * 4.64309 * 7 6 5 9 9 C 1.37873 * 120.00375 * 184.64710 * 7 6 5 10 10 N 1.31523 * 120.00002 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00325 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47132 * 59.99900 * 11 9 7 13 13 H 1.48503 * 109.47531 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47346 * 299.99895 * 11 9 7 15 15 C 1.46903 * 111.00052 * 164.23646 * 5 4 3 16 16 C 1.50698 * 109.47119 * 293.95352 * 15 5 4 17 17 C 1.38237 * 120.00127 * 89.99832 * 16 15 5 18 18 C 1.38238 * 119.99990 * 179.97438 * 17 16 15 19 19 C 1.38236 * 120.00025 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.99925 * 179.97438 * 19 18 17 21 21 C 1.53784 * 113.61396 * 217.49560 * 20 19 18 22 22 C 1.53778 * 87.07859 * 220.01807 * 21 20 19 23 23 C 1.53781 * 113.61679 * 119.99418 * 20 19 18 24 24 C 1.38237 * 119.99985 * 0.02562 * 19 18 17 25 25 C 1.38236 * 119.99888 * 269.97794 * 16 15 5 26 26 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46898 * 299.99647 * 1 2 3 28 28 H 1.09006 * 109.46993 * 59.99437 * 1 2 3 29 29 H 1.09000 * 109.46898 * 240.00352 * 2 1 3 30 30 H 1.08994 * 109.47494 * 120.00172 * 2 1 3 31 31 H 1.09004 * 109.46564 * 60.00065 * 3 2 1 32 32 H 1.08994 * 109.47055 * 300.00441 * 3 2 1 33 33 H 1.08996 * 109.46864 * 59.71163 * 4 3 2 34 34 H 1.08999 * 109.46984 * 299.71223 * 4 3 2 35 35 H 1.09002 * 109.47497 * 280.35467 * 6 5 4 36 36 H 1.09004 * 109.47569 * 40.35739 * 6 5 4 37 37 H 0.96994 * 119.99731 * 179.97438 * 10 9 7 38 38 H 1.09003 * 109.47035 * 173.95094 * 15 5 4 39 39 H 1.08999 * 109.46848 * 53.95473 * 15 5 4 40 40 H 1.07997 * 119.99853 * 359.97438 * 17 16 15 41 41 H 1.07999 * 119.99493 * 179.70049 * 18 17 16 42 42 H 1.08998 * 112.84846 * 348.80080 * 20 19 18 43 43 H 1.08999 * 113.60694 * 334.56527 * 21 20 19 44 44 H 1.09000 * 113.61246 * 105.46487 * 21 20 19 45 45 H 1.09001 * 113.61407 * 270.88396 * 22 21 20 46 46 H 1.08997 * 113.61205 * 139.98237 * 22 21 20 47 47 H 1.08994 * 113.61913 * 254.53129 * 23 20 19 48 48 H 1.09003 * 113.61216 * 25.35004 * 23 20 19 49 49 H 1.07997 * 119.99747 * 180.02562 * 24 19 18 50 50 H 1.07999 * 120.00335 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8275 -0.0063 6 6 3.8320 3.4597 -1.3126 7 6 3.8836 4.9582 -1.1613 8 1 4.1411 5.3962 -0.2082 9 6 3.6021 5.7702 -2.2394 10 7 3.2890 5.2369 -3.4002 11 14 3.6653 7.6276 -2.0516 12 1 5.0325 8.0374 -1.6413 13 1 3.3252 8.2681 -3.3475 14 1 2.6892 8.0541 -1.0169 15 6 5.4794 2.8859 0.3665 16 6 5.6398 2.4561 1.8020 17 6 5.8533 1.1244 2.1051 18 6 6.0009 0.7303 3.4219 19 6 5.9357 1.6680 4.4355 20 6 6.0961 1.2383 5.8710 21 6 5.1850 2.0005 6.8477 22 6 6.3767 2.0219 7.8193 23 6 7.2850 1.9037 6.5840 24 6 5.7222 2.9997 4.1324 25 6 5.5739 3.3937 2.8157 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.9336 0.9241 -0.8865 34 1 3.9329 0.9333 0.8934 35 1 4.6044 3.1384 -2.0114 36 1 2.8534 3.1665 -1.6927 37 1 3.0906 5.8081 -4.1586 38 1 5.8440 3.9064 0.2498 39 1 6.0520 2.2194 -0.2784 40 1 5.9047 0.3919 1.3132 41 1 6.1629 -0.3108 3.6589 42 1 6.0628 0.1559 5.9950 43 1 4.8938 2.9888 6.4920 44 1 4.3400 1.4124 7.2058 45 1 6.4193 1.1539 8.4772 46 1 6.4873 2.9653 8.3539 47 1 8.1354 1.2376 6.7295 48 1 7.5688 2.8649 6.1555 49 1 5.6716 3.7324 4.9242 50 1 5.4078 4.4343 2.5789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237110970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:15 Heat of formation + Delta-G solvation = 22.781199 kcal Electronic energy + Delta-G solvation = -24470.675858 eV Core-core repulsion = 21269.259292 eV Total energy + Delta-G solvation = -3201.416567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.99956 -38.24861 -36.66600 -34.25588 -32.62311 -31.29509 -30.65803 -28.71632 -27.33379 -25.75033 -25.59562 -23.72874 -22.92690 -22.42238 -21.21323 -20.53748 -19.62402 -19.16356 -16.62955 -16.44326 -15.69504 -15.17533 -15.06786 -14.75805 -14.58544 -14.21649 -14.00680 -13.60672 -13.38740 -13.15047 -13.02163 -12.76346 -12.57012 -12.47158 -12.15761 -12.02503 -11.85382 -11.55711 -11.28802 -11.05277 -10.97930 -10.86575 -10.74610 -10.64156 -10.58068 -10.52596 -10.43572 -10.24129 -10.18404 -10.05505 -9.57527 -9.21731 -8.59373 -8.39381 -8.18975 -7.19680 -5.99538 -4.00463 1.60417 1.70592 3.34905 3.38995 3.41913 3.95413 4.45217 4.48877 4.55703 4.59218 4.87883 4.97905 5.09175 5.15817 5.23949 5.31225 5.31594 5.36719 5.47428 5.49049 5.54395 5.55327 5.62719 5.71194 5.77910 5.78697 5.80480 5.83565 6.00243 6.06913 6.08255 6.11140 6.18441 6.24615 6.27023 6.30394 6.35785 6.39486 6.46638 6.55016 6.71548 6.78052 6.85778 6.90560 7.05753 7.27812 7.32528 7.37376 7.85193 8.15956 8.24764 8.58390 9.06660 9.63317 11.11003 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.011245 B = 0.003855 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.332357 B = 7262.209590 C = 8907.529033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.051 3.949 5 N -0.528 5.528 6 C 0.191 3.809 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.097 3.903 16 C -0.062 4.062 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.084 4.084 20 C -0.070 4.070 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.132 4.132 24 C -0.119 4.119 25 C -0.095 4.095 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.064 0.936 35 H -0.013 1.013 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.089 0.911 39 H 0.027 0.973 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.116 0.884 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.061 -10.304 16.898 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.077 4.077 5 N -0.253 5.253 6 C 0.067 3.933 7 C -0.542 4.542 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.031 4.031 16 C -0.062 4.062 17 C -0.135 4.135 18 C -0.139 4.139 19 C -0.084 4.084 20 C -0.088 4.088 21 C -0.172 4.172 22 C -0.182 4.182 23 C -0.169 4.169 24 C -0.137 4.137 25 C -0.113 4.113 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.005 0.995 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.134 0.866 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.742 -9.976 17.033 20.091 hybrid contribution 0.398 0.524 -0.747 0.995 sum 4.141 -9.453 16.286 19.280 Atomic orbital electron populations 1.21749 0.96243 1.00777 1.01935 1.21491 0.95554 0.97735 1.01174 1.21566 0.95281 0.95178 1.03015 1.22144 0.95413 0.90974 0.99213 1.62138 1.14455 1.14535 1.34133 1.19795 0.96454 0.94251 0.82836 1.21129 1.46052 0.90706 0.96288 0.92027 1.24977 0.95545 0.98840 0.95244 1.69948 1.47666 1.35309 1.01070 0.86593 0.78494 0.85365 0.77137 1.20320 1.21427 1.20202 1.20989 0.90641 1.01666 0.89797 1.20052 0.96894 0.92971 0.96309 1.21032 1.00669 0.95643 0.96113 1.20888 1.01777 0.98652 0.92554 1.19576 1.01091 0.93579 0.94184 1.21464 0.97132 0.99555 0.90631 1.23043 0.96703 1.01139 0.96353 1.22841 0.96951 1.01915 0.96469 1.22983 0.96444 1.01224 0.96237 1.20910 1.01226 0.95242 0.96283 1.21072 0.98382 0.99949 0.91944 0.93410 0.92887 0.92675 0.92563 0.92671 0.91747 0.91347 0.96318 0.91761 0.99477 0.94438 0.92940 0.89266 0.95492 0.86690 0.86870 0.88995 0.89577 0.91531 0.90372 0.91517 0.91632 0.89840 0.86612 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.11 -1.98 5.28 -26.73 -0.14 -2.12 16 4 C 0.05 0.94 4.80 -3.83 -0.02 0.93 16 5 N -0.53 -11.37 4.37 -237.52 -1.04 -12.41 16 6 C 0.19 4.95 4.59 -4.98 -0.02 4.93 16 7 C -0.50 -14.04 8.61 -34.44 -0.30 -14.33 16 8 H 0.06 1.70 7.66 -52.48 -0.40 1.30 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 11 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.10 1.88 4.94 -4.98 -0.02 1.85 16 16 C -0.06 -1.03 4.94 -104.62 -0.52 -1.54 16 17 C -0.12 -1.70 7.85 -39.58 -0.31 -2.01 16 18 C -0.12 -1.57 9.71 -39.58 -0.38 -1.96 16 19 C -0.08 -1.06 5.29 -104.62 -0.55 -1.61 16 20 C -0.07 -0.69 3.98 -90.96 -0.36 -1.06 16 21 C -0.14 -1.24 7.46 -25.92 -0.19 -1.43 16 22 C -0.14 -1.14 8.08 -25.92 -0.21 -1.35 16 23 C -0.13 -1.17 7.55 -25.92 -0.20 -1.37 16 24 C -0.12 -1.60 8.61 -39.58 -0.34 -1.94 16 25 C -0.09 -1.50 9.70 -39.58 -0.38 -1.88 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.36 6.52 -51.93 -0.34 1.02 16 33 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 34 H 0.06 1.09 5.14 -51.93 -0.27 0.83 16 35 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 36 H 0.04 1.04 6.23 -51.93 -0.32 0.71 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.09 1.86 7.26 -51.93 -0.38 1.48 16 39 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 40 H 0.12 1.58 7.73 -52.49 -0.41 1.18 16 41 H 0.11 1.23 8.05 -52.49 -0.42 0.81 16 42 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.09 0.83 6.31 -51.93 -0.33 0.50 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 49 H 0.12 1.35 6.66 -52.49 -0.35 1.00 16 50 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -29.29 390.50 -12.35 -41.64 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -9.07 Total: 1.09 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -3.84 Total: -26.87 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.30 Total: -38.39 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.29 -12.35 -41.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237110970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.422 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds