Wall clock time and date at job start Tue Mar 31 2020 07:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 H 1.09002 * 109.46659 * 56.37729 * 3 2 1 5 5 C 1.50707 * 109.47081 * 176.36896 * 3 2 1 6 6 H 1.07999 * 119.99472 * 115.10472 * 5 3 2 7 7 C 1.37878 * 120.00071 * 295.10392 * 5 3 2 8 8 N 1.31512 * 119.99673 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 119.99923 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47219 * 89.99904 * 9 7 5 11 11 H 1.48507 * 109.47098 * 209.99615 * 9 7 5 12 12 H 1.48494 * 109.47597 * 329.99678 * 9 7 5 13 13 N 1.46899 * 109.47489 * 296.37298 * 3 2 1 14 14 C 1.46897 * 111.00151 * 285.19691 * 13 3 2 15 15 C 1.50695 * 109.47268 * 159.84866 * 14 13 3 16 16 C 1.38239 * 119.99953 * 273.01927 * 15 14 13 17 17 C 1.38234 * 119.99856 * 179.76190 * 16 15 14 18 18 C 1.38246 * 119.99914 * 0.51300 * 17 16 15 19 19 C 1.38229 * 119.99759 * 359.73667 * 18 17 16 20 20 C 1.38231 * 120.00374 * 0.02562 * 19 18 17 21 21 C 1.46899 * 111.00017 * 161.24472 * 13 3 2 22 22 C 1.53005 * 109.47094 * 292.83349 * 21 13 3 23 23 C 1.53000 * 109.46855 * 179.97438 * 22 21 13 24 24 C 1.53001 * 109.47443 * 299.99456 * 23 22 21 25 25 C 1.53005 * 109.46650 * 60.00419 * 24 23 22 26 26 C 1.53000 * 109.46855 * 299.99941 * 25 24 23 27 27 H 1.08998 * 109.47596 * 65.08885 * 1 2 3 28 28 H 1.09004 * 109.46803 * 185.09359 * 1 2 3 29 29 H 1.09005 * 109.46746 * 305.08673 * 1 2 3 30 30 H 1.09005 * 109.46890 * 240.01019 * 2 1 3 31 31 H 1.08993 * 109.47452 * 120.00457 * 2 1 3 32 32 H 0.97002 * 119.99599 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47575 * 279.85212 * 14 13 3 34 34 H 1.09005 * 109.46823 * 39.84941 * 14 13 3 35 35 H 1.07998 * 120.00394 * 359.97438 * 16 15 14 36 36 H 1.08000 * 120.00122 * 180.22764 * 17 16 15 37 37 H 1.07997 * 119.99686 * 179.72082 * 18 17 16 38 38 H 1.07998 * 120.00028 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.00454 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47703 * 172.83282 * 21 13 3 41 41 H 1.09000 * 109.47360 * 60.00059 * 22 21 13 42 42 H 1.08995 * 109.46805 * 299.99715 * 22 21 13 43 43 H 1.09006 * 109.46768 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47350 * 60.00334 * 23 22 21 45 45 H 1.09001 * 109.46954 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46922 * 300.00499 * 24 23 22 47 47 H 1.09000 * 109.47360 * 59.99826 * 25 24 23 48 48 H 1.08995 * 109.46805 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.47043 * 300.00079 * 26 25 24 50 50 H 1.09006 * 109.46768 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6246 1.9747 0.8558 5 6 3.5444 1.4434 0.0900 6 1 4.1342 1.8227 -0.7314 7 6 4.1677 0.9602 1.2209 8 7 5.4805 0.9606 1.2992 9 14 3.1475 0.3037 2.6413 10 1 2.9124 -1.1502 2.4514 11 1 3.8749 0.5250 3.9170 12 1 1.8444 1.0144 2.6849 13 7 1.6232 2.1093 -1.2408 14 6 2.4286 1.6513 -2.3808 15 6 1.6952 1.9446 -3.6641 16 6 0.7830 1.0333 -4.1627 17 6 0.1066 1.3046 -5.3373 18 6 0.3502 2.4824 -6.0190 19 6 1.2661 3.3912 -5.5231 20 6 1.9389 3.1222 -4.3459 21 6 1.6908 3.5701 -1.1017 22 6 0.6369 4.0359 -0.0951 23 6 0.7078 5.5573 0.0502 24 6 2.0986 5.9582 0.5460 25 6 3.1526 5.4924 -0.4607 26 6 3.0817 3.9710 -0.6060 27 1 -0.3634 0.4328 -0.9320 28 1 -0.3633 -1.0237 0.0912 29 1 -0.3633 0.5908 0.8410 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.9190 0.6210 2.0950 33 1 3.3859 2.1724 -2.3821 34 1 2.5993 0.5779 -2.2970 35 1 0.5962 0.1110 -3.6327 36 1 -0.6087 0.5944 -5.7249 37 1 -0.1750 2.6923 -6.9390 38 1 1.4567 4.3111 -6.0558 39 1 2.6548 3.8320 -3.9586 40 1 1.5009 4.0364 -2.0684 41 1 0.8268 3.5697 0.8717 42 1 -0.3539 3.7500 -0.4480 43 1 -0.0434 5.8892 0.7671 44 1 0.5181 6.0239 -0.9164 45 1 2.1492 7.0421 0.6490 46 1 2.2882 5.4916 1.5127 47 1 2.9629 5.9589 -1.4274 48 1 4.1434 5.7775 -0.1073 49 1 3.2713 3.5044 0.3607 50 1 3.8328 3.6391 -1.3228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:40 Heat of formation + Delta-G solvation = 14.979720 kcal Electronic energy + Delta-G solvation = -26712.532722 eV Core-core repulsion = 23510.777857 eV Total energy + Delta-G solvation = -3201.754864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.60190 -38.35153 -35.92444 -33.02836 -31.93073 -31.05864 -30.56379 -30.16875 -28.27368 -27.03487 -24.74497 -22.75153 -22.23121 -21.92180 -21.27560 -20.78381 -19.80624 -18.02821 -16.91587 -16.20739 -15.75556 -14.85710 -14.79263 -14.55978 -14.42176 -13.94427 -13.60855 -13.50506 -13.17171 -13.00238 -12.70999 -12.50447 -12.35614 -12.23989 -12.03341 -11.74860 -11.65332 -11.57677 -11.14892 -11.05784 -10.75808 -10.71778 -10.56987 -10.52518 -10.37693 -10.00797 -9.91029 -9.87469 -9.70741 -9.49460 -9.32080 -8.93066 -8.60618 -8.51860 -8.34856 -7.13174 -6.11606 -4.07726 1.69132 1.71528 3.24750 3.36067 3.36918 4.08998 4.37014 4.92292 5.15999 5.18527 5.20215 5.24376 5.29874 5.32696 5.43868 5.57366 5.75784 5.79606 5.86382 5.88394 6.00501 6.05800 6.06754 6.09508 6.13207 6.13985 6.15795 6.26822 6.28741 6.34186 6.41812 6.49066 6.58449 6.62396 6.62740 6.70720 6.76684 6.77611 6.78739 6.82320 6.90120 6.96316 7.07476 7.09455 7.21510 7.26095 7.33555 7.45465 7.65561 8.13821 8.18524 8.46769 8.90638 9.51096 11.00080 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.006521 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.203943 B = 4293.023473 C = 5307.435284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.176 3.824 4 H 0.044 0.956 5 C -0.537 4.537 6 H 0.085 0.915 7 C 0.074 3.926 8 N -0.896 5.896 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.263 1.263 13 N -0.515 5.515 14 C 0.096 3.904 15 C -0.056 4.056 16 C -0.103 4.103 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.116 4.116 21 C 0.094 3.906 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.148 4.148 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.262 0.738 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.046 0.954 48 H 0.052 0.948 49 H 0.107 0.893 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 5.233 -8.081 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C 0.068 3.932 4 H 0.062 0.938 5 C -0.575 4.575 6 H 0.103 0.897 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.188 1.188 13 N -0.236 5.236 14 C -0.031 4.031 15 C -0.057 4.057 16 C -0.121 4.121 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.143 4.143 20 C -0.135 4.135 21 C -0.015 4.015 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.155 4.155 26 C -0.187 4.187 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.125 0.875 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.832 5.036 -8.043 13.664 hybrid contribution 0.499 -0.220 1.013 1.150 sum -9.333 4.816 -7.030 12.638 Atomic orbital electron populations 1.21721 0.97587 0.98977 1.01628 1.21857 0.93808 0.99472 1.00400 1.19859 0.94501 0.90384 0.88428 0.93807 1.21789 0.90339 1.41496 1.03890 0.89693 1.24928 0.94577 0.95188 0.98130 1.69902 1.08052 1.46587 1.28866 0.87009 0.80811 0.79700 0.82012 1.20521 1.22507 1.18826 1.62448 1.52783 1.04255 1.04163 1.20958 0.93917 1.01460 0.86774 1.20212 0.95874 0.93483 0.96099 1.21047 0.95931 0.99637 0.95505 1.21081 1.00045 0.97238 0.95964 1.20994 0.99312 0.94997 1.00028 1.21037 0.97433 0.99196 0.96613 1.21103 1.00095 0.97018 0.95261 1.21523 0.93967 0.88637 0.97400 1.21554 0.98835 0.94216 0.99997 1.21484 0.96690 0.96650 1.00353 1.21517 0.95168 0.99269 0.99527 1.21555 0.97959 0.98032 0.97969 1.22571 0.97349 0.93308 1.05423 0.92062 0.95084 0.94116 0.92597 0.93633 0.92764 0.93027 0.90014 0.86246 0.86799 0.86969 0.86851 0.86563 0.91821 0.91736 0.92351 0.92820 0.92691 0.93217 0.92063 0.93538 0.92884 0.87486 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.72 37.16 0.36 -2.14 16 2 C -0.12 -2.41 5.01 -26.73 -0.13 -2.55 16 3 C 0.18 3.76 0.76 -68.86 -0.05 3.70 16 4 H 0.04 1.00 4.65 -51.93 -0.24 0.76 16 5 C -0.54 -13.33 5.38 -34.44 -0.19 -13.52 16 6 H 0.09 2.28 4.88 -52.49 -0.26 2.02 16 7 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 8 N -0.90 -25.91 13.96 55.43 0.77 -25.14 16 9 Si 0.87 21.00 24.65 -169.99 -4.19 16.81 16 10 H -0.28 -6.64 6.86 56.52 0.39 -6.26 16 11 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.26 -6.08 6.40 56.52 0.36 -5.72 16 13 N -0.51 -9.63 3.79 -221.53 -0.84 -10.47 16 14 C 0.10 1.77 3.84 -4.98 -0.02 1.76 16 15 C -0.06 -0.90 5.10 -104.62 -0.53 -1.44 16 16 C -0.10 -1.53 9.71 -39.58 -0.38 -1.91 16 17 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 18 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 19 C -0.12 -1.64 10.05 -39.59 -0.40 -2.03 16 20 C -0.12 -1.73 8.34 -39.58 -0.33 -2.06 16 21 C 0.09 1.64 2.09 -67.71 -0.14 1.50 16 22 C -0.11 -1.78 5.19 -26.73 -0.14 -1.92 16 23 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 24 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 25 C -0.12 -1.88 5.92 -26.73 -0.16 -2.04 16 26 C -0.15 -2.80 3.61 -26.73 -0.10 -2.90 16 27 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.14 6.62 -51.93 -0.34 0.79 16 31 H 0.05 1.01 3.91 -51.93 -0.20 0.81 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.05 1.03 5.08 -51.93 -0.26 0.77 16 34 H 0.08 1.60 6.28 -51.93 -0.33 1.28 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.11 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.70 7.82 -52.49 -0.41 1.29 16 40 H 0.06 1.09 6.10 -51.93 -0.32 0.77 16 41 H 0.06 1.18 6.30 -51.93 -0.33 0.85 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.11 2.41 5.49 -51.93 -0.29 2.13 16 50 H 0.06 1.16 5.71 -51.93 -0.30 0.87 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -26.60 359.41 -10.62 -37.22 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.36 Total: 7.59 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: -3.42 Total: -31.44 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.07 Total: -35.61 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.19 Total: 16.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.60 -10.62 -37.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.204 kcal (2) G-P(sol) polarization free energy of solvation -26.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds