Wall clock time and date at job start Tue Mar 31 2020 07:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 H 1.09002 * 109.46659 * 56.37729 * 3 2 1 5 5 C 1.50707 * 109.47081 * 176.36896 * 3 2 1 6 6 H 1.07999 * 119.99472 * 115.10472 * 5 3 2 7 7 C 1.37878 * 120.00071 * 295.10392 * 5 3 2 8 8 N 1.31512 * 119.99673 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 119.99923 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47219 * 89.99904 * 9 7 5 11 11 H 1.48507 * 109.47098 * 209.99615 * 9 7 5 12 12 H 1.48494 * 109.47597 * 329.99678 * 9 7 5 13 13 N 1.46899 * 109.47489 * 296.37298 * 3 2 1 14 14 C 1.46897 * 111.00151 * 285.19691 * 13 3 2 15 15 C 1.50695 * 109.47268 * 159.84866 * 14 13 3 16 16 C 1.38239 * 119.99953 * 273.01927 * 15 14 13 17 17 C 1.38234 * 119.99856 * 179.76190 * 16 15 14 18 18 C 1.38246 * 119.99914 * 0.51300 * 17 16 15 19 19 C 1.38229 * 119.99759 * 359.73667 * 18 17 16 20 20 C 1.38231 * 120.00374 * 0.02562 * 19 18 17 21 21 C 1.46899 * 111.00017 * 161.24472 * 13 3 2 22 22 C 1.53005 * 109.47094 * 292.83349 * 21 13 3 23 23 C 1.53000 * 109.46855 * 179.97438 * 22 21 13 24 24 C 1.53001 * 109.47443 * 299.99456 * 23 22 21 25 25 C 1.53005 * 109.46650 * 60.00419 * 24 23 22 26 26 C 1.53000 * 109.46855 * 299.99941 * 25 24 23 27 27 H 1.08998 * 109.47596 * 65.08885 * 1 2 3 28 28 H 1.09004 * 109.46803 * 185.09359 * 1 2 3 29 29 H 1.09005 * 109.46746 * 305.08673 * 1 2 3 30 30 H 1.09005 * 109.46890 * 240.01019 * 2 1 3 31 31 H 1.08993 * 109.47452 * 120.00457 * 2 1 3 32 32 H 0.97002 * 119.99599 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47575 * 279.85212 * 14 13 3 34 34 H 1.09005 * 109.46823 * 39.84941 * 14 13 3 35 35 H 1.07998 * 120.00394 * 359.97438 * 16 15 14 36 36 H 1.08000 * 120.00122 * 180.22764 * 17 16 15 37 37 H 1.07997 * 119.99686 * 179.72082 * 18 17 16 38 38 H 1.07998 * 120.00028 * 179.97438 * 19 18 17 39 39 H 1.07998 * 120.00454 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47703 * 172.83282 * 21 13 3 41 41 H 1.09000 * 109.47360 * 60.00059 * 22 21 13 42 42 H 1.08995 * 109.46805 * 299.99715 * 22 21 13 43 43 H 1.09006 * 109.46768 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47350 * 60.00334 * 23 22 21 45 45 H 1.09001 * 109.46954 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46922 * 300.00499 * 24 23 22 47 47 H 1.09000 * 109.47360 * 59.99826 * 25 24 23 48 48 H 1.08995 * 109.46805 * 180.02562 * 25 24 23 49 49 H 1.09000 * 109.47043 * 300.00079 * 26 25 24 50 50 H 1.09006 * 109.46768 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6246 1.9747 0.8558 5 6 3.5444 1.4434 0.0900 6 1 4.1342 1.8227 -0.7314 7 6 4.1677 0.9602 1.2209 8 7 5.4805 0.9606 1.2992 9 14 3.1475 0.3037 2.6413 10 1 2.9124 -1.1502 2.4514 11 1 3.8749 0.5250 3.9170 12 1 1.8444 1.0144 2.6849 13 7 1.6232 2.1093 -1.2408 14 6 2.4286 1.6513 -2.3808 15 6 1.6952 1.9446 -3.6641 16 6 0.7830 1.0333 -4.1627 17 6 0.1066 1.3046 -5.3373 18 6 0.3502 2.4824 -6.0190 19 6 1.2661 3.3912 -5.5231 20 6 1.9389 3.1222 -4.3459 21 6 1.6908 3.5701 -1.1017 22 6 0.6369 4.0359 -0.0951 23 6 0.7078 5.5573 0.0502 24 6 2.0986 5.9582 0.5460 25 6 3.1526 5.4924 -0.4607 26 6 3.0817 3.9710 -0.6060 27 1 -0.3634 0.4328 -0.9320 28 1 -0.3633 -1.0237 0.0912 29 1 -0.3633 0.5908 0.8410 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.9190 0.6210 2.0950 33 1 3.3859 2.1724 -2.3821 34 1 2.5993 0.5779 -2.2970 35 1 0.5962 0.1110 -3.6327 36 1 -0.6087 0.5944 -5.7249 37 1 -0.1750 2.6923 -6.9390 38 1 1.4567 4.3111 -6.0558 39 1 2.6548 3.8320 -3.9586 40 1 1.5009 4.0364 -2.0684 41 1 0.8268 3.5697 0.8717 42 1 -0.3539 3.7500 -0.4480 43 1 -0.0434 5.8892 0.7671 44 1 0.5181 6.0239 -0.9164 45 1 2.1492 7.0421 0.6490 46 1 2.2882 5.4916 1.5127 47 1 2.9629 5.9589 -1.4274 48 1 4.1434 5.7775 -0.1073 49 1 3.2713 3.5044 0.3607 50 1 3.8328 3.6391 -1.3228 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:39 Heat of formation + Delta-G solvation = 2.364566 kcal Electronic energy + Delta-G solvation = -26713.079756 eV Core-core repulsion = 23510.777857 eV Total energy + Delta-G solvation = -3202.301898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02996 -39.55226 -37.40084 -34.70770 -33.75879 -32.32220 -31.65104 -31.53983 -29.72406 -28.74648 -26.23023 -24.36206 -23.38672 -23.32285 -22.66990 -22.15839 -21.18650 -19.58950 -18.73763 -17.45973 -17.27450 -16.50304 -16.11011 -15.96254 -15.73938 -15.40494 -15.00607 -14.89876 -14.65777 -14.34107 -14.14799 -14.01338 -13.80270 -13.60148 -13.37735 -13.27734 -13.20261 -12.95447 -12.83406 -12.50922 -12.35007 -12.10689 -12.00172 -11.80972 -11.71902 -11.58136 -11.47165 -11.42588 -11.31901 -11.10648 -10.80956 -10.71715 -10.52967 -9.67833 -9.50855 -8.77300 -8.23105 -6.19201 0.58781 0.63741 1.29185 1.34575 1.42345 2.34144 2.95368 3.11700 3.46657 3.90112 4.01294 4.05744 4.11310 4.23953 4.30591 4.34455 4.38026 4.44710 4.50206 4.53525 4.60413 4.68131 4.72756 4.76960 4.78442 4.80323 4.83352 4.88250 4.95914 5.06514 5.07975 5.18676 5.22794 5.27282 5.27754 5.29616 5.33706 5.36554 5.45533 5.50446 5.52620 5.59038 5.60943 5.66437 5.71452 5.73030 5.90066 5.92047 6.25156 6.28695 6.47697 6.64508 6.84084 7.41983 8.92049 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.006521 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.203943 B = 4293.023473 C = 5307.435284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.119 4.119 3 C 0.183 3.817 4 H 0.036 0.964 5 C -0.512 4.512 6 H 0.053 0.947 7 C 0.018 3.982 8 N -0.947 5.947 9 Si 0.925 3.075 10 H -0.273 1.273 11 H -0.305 1.305 12 H -0.247 1.247 13 N -0.505 5.505 14 C 0.108 3.892 15 C -0.076 4.076 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.129 4.129 21 C 0.096 3.904 22 C -0.105 4.105 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.137 4.137 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.259 0.741 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.118 0.882 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.043 0.957 47 H 0.066 0.934 48 H 0.044 0.956 49 H 0.065 0.935 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.130 6.435 -9.774 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C 0.075 3.925 4 H 0.054 0.946 5 C -0.551 4.551 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.588 5.588 9 Si 0.754 3.246 10 H -0.199 1.199 11 H -0.233 1.233 12 H -0.171 1.171 13 N -0.226 5.226 14 C -0.020 4.020 15 C -0.076 4.076 16 C -0.133 4.133 17 C -0.141 4.141 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.148 4.148 21 C -0.012 4.012 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.152 4.152 26 C -0.176 4.176 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.136 0.864 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.499 6.242 -9.749 17.783 hybrid contribution 1.669 -0.547 1.374 2.229 sum -11.830 5.695 -8.375 15.574 Atomic orbital electron populations 1.21607 0.94657 1.00517 1.02025 1.21790 0.96403 0.98022 0.99464 1.19689 0.91743 0.91520 0.89581 0.94633 1.22000 0.92342 1.38560 1.02157 0.92849 1.25595 0.95256 0.96306 1.00711 1.70045 1.09816 1.49350 1.29638 0.86170 0.80006 0.79510 0.78930 1.19898 1.23289 1.17109 1.62518 1.52028 1.05028 1.03008 1.20744 0.93238 0.99640 0.88335 1.19967 0.97235 0.95044 0.95382 1.21120 0.96211 0.99378 0.96636 1.21394 0.99755 0.98027 0.94899 1.21417 0.98450 0.94102 1.00714 1.21336 0.96770 1.00343 0.95667 1.21128 1.00672 0.96594 0.96360 1.21584 0.93439 0.87823 0.98369 1.21534 0.98484 0.96116 0.98174 1.21462 0.96620 0.94580 1.01843 1.21509 0.95003 1.00773 0.97977 1.21516 0.98468 0.95550 0.99644 1.22307 0.97671 0.95545 1.02084 0.91404 0.92929 0.93965 0.93022 0.95123 0.93160 0.95907 0.92071 0.86420 0.84109 0.83673 0.84312 0.87232 0.90655 0.93914 0.91367 0.90712 0.91031 0.90482 0.93803 0.91559 0.93673 0.91685 0.95387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.72 71.98 0.70 -3.67 16 2 C -0.12 -4.89 5.01 30.59 0.15 -4.74 16 3 C 0.18 8.03 0.76 44.17 0.03 8.07 16 4 H 0.04 1.66 4.65 -2.39 -0.01 1.65 16 5 C -0.51 -27.00 5.38 25.60 0.14 -26.86 16 6 H 0.05 3.12 4.88 -2.91 -0.01 3.11 16 7 C 0.02 1.04 5.45 84.66 0.46 1.50 16 8 N -0.95 -58.14 13.96 21.45 0.30 -57.84 16 9 Si 0.93 44.64 24.65 68.60 1.69 46.33 16 10 H -0.27 -12.80 6.86 99.48 0.68 -12.12 16 11 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 12 H -0.25 -11.13 6.40 99.48 0.64 -10.50 16 13 N -0.50 -19.25 3.79 -854.78 -3.24 -22.49 16 14 C 0.11 4.18 3.84 85.56 0.33 4.51 16 15 C -0.08 -2.44 5.10 -19.87 -0.10 -2.54 16 16 C -0.11 -3.27 9.71 22.27 0.22 -3.06 16 17 C -0.12 -2.81 10.05 22.27 0.22 -2.59 16 18 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 19 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 20 C -0.13 -3.73 8.34 22.27 0.19 -3.54 16 21 C 0.10 3.40 2.09 44.92 0.09 3.49 16 22 C -0.11 -3.32 5.19 30.60 0.16 -3.16 16 23 C -0.11 -2.73 5.92 30.59 0.18 -2.55 16 24 C -0.12 -3.21 5.92 30.60 0.18 -3.02 16 25 C -0.11 -3.64 5.92 30.60 0.18 -3.46 16 26 C -0.14 -5.46 3.61 30.59 0.11 -5.35 16 27 H 0.07 2.17 7.86 -2.39 -0.02 2.16 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.05 2.14 6.62 -2.38 -0.02 2.13 16 31 H 0.03 1.35 3.91 -2.39 -0.01 1.34 16 32 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.02 1.00 5.08 -2.39 -0.01 0.99 16 34 H 0.06 2.56 6.28 -2.38 -0.01 2.54 16 35 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.11 3.22 7.82 -2.91 -0.02 3.20 16 40 H 0.08 2.52 6.10 -2.39 -0.01 2.50 16 41 H 0.04 1.53 6.30 -2.39 -0.02 1.52 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.06 3.13 5.49 -2.39 -0.01 3.12 16 50 H 0.03 1.24 5.71 -2.38 -0.01 1.22 16 Total: -1.00 -61.47 359.41 3.26 -58.21 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.81 Total: 27.86 kcal Atomic # 6 Polarization: -55.76 SS G_CDS: 3.69 Total: -52.07 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.94 Total: -80.33 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.69 Total: 46.33 kcal Total: -61.47 3.26 -58.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.572 kcal (2) G-P(sol) polarization free energy of solvation -61.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds