Wall clock time and date at job start Tue Mar 31 2020 07:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47368 * 2 1 4 4 H 1.09007 * 109.46860 * 304.90493 * 3 2 1 5 5 C 1.50696 * 109.47308 * 184.90702 * 3 2 1 6 6 H 1.08000 * 119.99548 * 239.99816 * 5 3 2 7 7 C 1.37873 * 120.00432 * 59.99484 * 5 3 2 8 8 N 1.31518 * 119.99611 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00376 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46635 * 60.00228 * 9 7 5 11 11 H 1.48494 * 109.47196 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47147 * 300.00497 * 9 7 5 13 13 N 1.46902 * 109.47028 * 64.90081 * 3 2 1 14 14 C 1.46903 * 110.99848 * 75.98130 * 13 3 2 15 15 C 1.50698 * 109.46833 * 199.90908 * 14 13 3 16 16 C 1.38235 * 120.00180 * 84.85775 * 15 14 13 17 17 C 1.38237 * 119.99976 * 179.72283 * 16 15 14 18 18 C 1.38238 * 119.99836 * 0.28028 * 17 16 15 19 19 C 1.38231 * 119.99978 * 359.95192 * 18 17 16 20 20 C 1.38234 * 119.99708 * 265.06820 * 15 14 13 21 21 C 1.46904 * 110.99660 * 199.92894 * 13 3 2 22 22 C 1.53001 * 109.46928 * 65.58248 * 21 13 3 23 23 C 1.53004 * 109.47147 * 179.97438 * 22 21 13 24 24 C 1.53002 * 109.46978 * 59.99497 * 23 22 21 25 25 C 1.52997 * 109.47148 * 300.00482 * 24 23 22 26 26 C 1.52995 * 109.47348 * 60.00246 * 25 24 23 27 27 H 1.09002 * 109.47179 * 304.82073 * 1 2 3 28 28 H 1.08998 * 109.46869 * 64.82208 * 1 2 3 29 29 H 1.09001 * 109.47010 * 184.82403 * 1 2 3 30 30 H 1.08996 * 109.47658 * 239.99734 * 2 1 3 31 31 H 1.09007 * 109.47104 * 119.99532 * 2 1 3 32 32 H 0.97006 * 119.99703 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47171 * 79.90532 * 14 13 3 34 34 H 1.09002 * 109.46819 * 319.90334 * 14 13 3 35 35 H 1.07999 * 119.99796 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.99778 * 180.25236 * 17 16 15 37 37 H 1.07997 * 119.99688 * 179.97438 * 18 17 16 38 38 H 1.07998 * 120.00168 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.00448 * 0.04785 * 20 15 14 40 40 H 1.09001 * 109.46581 * 185.57782 * 21 13 3 41 41 H 1.09001 * 109.47109 * 299.99210 * 22 21 13 42 42 H 1.09002 * 109.47570 * 59.99595 * 22 21 13 43 43 H 1.09001 * 109.46637 * 299.99702 * 23 22 21 44 44 H 1.08996 * 109.46987 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46788 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46544 * 60.00425 * 24 23 22 47 47 H 1.09001 * 109.46853 * 299.99277 * 25 24 23 48 48 H 1.09000 * 109.46644 * 180.02562 * 25 24 23 49 49 H 1.09005 * 109.47097 * 180.02562 * 26 25 24 50 50 H 1.08994 * 109.47681 * 59.99941 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9811 -0.8429 5 6 3.5421 1.4442 -0.1215 6 1 4.1461 1.8893 0.6553 7 6 4.1452 0.8777 -1.2243 8 7 3.4096 0.3361 -2.1705 9 14 6.0071 0.8804 -1.3753 10 1 6.5978 0.1472 -0.2270 11 1 6.4020 0.2151 -2.6428 12 1 6.5016 2.2807 -1.3756 13 7 1.6494 2.1000 1.2542 14 6 2.4967 1.6543 2.3684 15 6 1.8000 1.9382 3.6741 16 6 0.8840 1.0346 4.1796 17 6 0.2492 1.2923 5.3802 18 6 0.5259 2.4564 6.0724 19 6 1.4383 3.3622 5.5646 20 6 2.0736 3.1043 4.3642 21 6 1.6874 3.5620 1.1162 22 6 0.6217 4.0074 0.1127 23 6 0.6609 5.5302 -0.0306 24 6 2.0421 5.9602 -0.5289 25 6 3.1077 5.5147 0.4745 26 6 3.0686 3.9920 0.6178 27 1 -0.3634 0.5868 0.8437 28 1 -0.3633 0.4372 -0.9300 29 1 -0.3633 -1.0240 0.0864 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8339 -0.0628 -2.9462 33 1 3.4461 2.1889 2.3393 34 1 2.6799 0.5834 2.2797 35 1 0.6675 0.1253 3.6385 36 1 -0.4634 0.5844 5.7770 37 1 0.0296 2.6579 7.0102 38 1 1.6548 4.2715 6.1056 39 1 2.7860 3.8122 3.9673 40 1 1.4907 4.0235 2.0839 41 1 0.8184 3.5459 -0.8550 42 1 -0.3623 3.7014 0.4679 43 1 0.4639 5.9914 0.9372 44 1 -0.0986 5.8475 -0.7452 45 1 2.0698 7.0450 -0.6315 46 1 2.2389 5.4989 -1.4967 47 1 2.9108 5.9761 1.4423 48 1 4.0916 5.8215 0.1197 49 1 3.8275 3.6747 1.3331 50 1 3.2655 3.5308 -0.3499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:42 Heat of formation + Delta-G solvation = 9.826996 kcal Electronic energy + Delta-G solvation = -26640.404118 eV Core-core repulsion = 23438.425815 eV Total energy + Delta-G solvation = -3201.978303 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.50497 -38.29155 -35.76773 -33.03033 -31.49309 -30.92469 -30.51498 -30.15703 -28.16233 -26.54298 -24.76917 -22.85761 -22.19860 -21.91211 -21.15947 -20.53312 -19.75745 -17.95638 -16.62304 -16.09050 -15.48242 -14.93614 -14.71512 -14.50071 -14.19273 -13.88284 -13.59336 -13.38497 -13.10594 -13.08009 -12.66021 -12.36566 -12.18739 -12.01494 -11.91972 -11.62603 -11.46843 -11.17513 -11.01962 -10.97389 -10.72496 -10.66374 -10.56328 -10.40221 -10.27123 -10.18593 -9.86976 -9.75588 -9.52970 -9.41268 -9.26190 -8.79374 -8.56851 -8.43150 -8.21050 -7.06922 -5.98797 -4.07379 1.72525 1.75150 3.26784 3.32614 3.35478 4.13365 4.39112 5.04221 5.20192 5.22481 5.24548 5.28213 5.32481 5.35507 5.48100 5.62210 5.82577 5.83988 5.89676 5.90832 6.07310 6.12893 6.13604 6.16100 6.20718 6.30654 6.36694 6.39300 6.45494 6.49797 6.52520 6.62675 6.64612 6.68602 6.73597 6.79445 6.82489 6.87104 6.94129 7.01708 7.13960 7.17456 7.21764 7.37582 7.42964 7.47703 7.62723 7.79868 8.03621 8.16612 8.37219 8.52359 8.98798 9.55785 11.00637 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.006315 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.758154 B = 4432.775668 C = 5255.686475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.212 3.788 4 H 0.045 0.955 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.523 5.523 14 C 0.098 3.902 15 C -0.056 4.056 16 C -0.101 4.101 17 C -0.125 4.125 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.118 4.118 21 C 0.096 3.904 22 C -0.108 4.108 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.152 4.152 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.023 0.977 30 H 0.090 0.910 31 H 0.029 0.971 32 H 0.261 0.739 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.050 0.950 49 H 0.051 0.949 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 6.159 9.251 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.106 3.894 4 H 0.063 0.937 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.709 3.291 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.245 5.245 14 C -0.030 4.030 15 C -0.057 4.057 16 C -0.119 4.119 17 C -0.143 4.143 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.013 4.013 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.191 4.191 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.225 5.897 9.149 12.074 hybrid contribution 1.958 0.240 -0.288 1.993 sum -3.268 6.137 8.861 11.263 Atomic orbital electron populations 1.21719 0.99035 0.98406 1.00475 1.21566 0.92116 0.99402 1.01596 1.19370 0.93043 0.91049 0.85986 0.93737 1.21887 0.92779 1.37398 1.05593 0.91923 1.24879 0.97347 0.95227 0.95979 1.69866 1.34705 1.38247 1.09457 0.86843 0.86763 0.78218 0.77324 1.20429 1.21393 1.20376 1.62555 1.51685 1.04291 1.05935 1.20936 0.93629 1.01440 0.86973 1.20264 0.95769 0.93445 0.96206 1.21061 0.95914 0.99751 0.95193 1.21088 1.00169 0.97343 0.95745 1.20983 0.99310 0.95132 0.99980 1.21024 0.97713 0.99199 0.96448 1.21084 1.00335 0.97079 0.95138 1.21458 0.93583 0.89152 0.97065 1.21561 0.98727 0.93948 1.00363 1.21485 0.96607 0.96860 1.00214 1.21503 0.95246 0.99147 0.99516 1.21546 0.97813 0.97997 0.98123 1.22597 0.98024 0.93399 1.05044 0.93062 0.94527 0.95822 0.89132 0.95243 0.92939 0.93684 0.90043 0.86154 0.86802 0.87008 0.86934 0.86722 0.92275 0.91199 0.92445 0.92861 0.92804 0.93306 0.91946 0.93503 0.93155 0.92991 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.86 37.16 0.37 -2.39 16 2 C -0.11 -2.44 5.28 -26.73 -0.14 -2.58 16 3 C 0.21 4.75 1.16 -68.86 -0.08 4.67 16 4 H 0.04 1.12 5.84 -51.93 -0.30 0.82 16 5 C -0.54 -13.09 4.99 -34.44 -0.17 -13.26 16 6 H 0.06 1.52 4.57 -52.49 -0.24 1.29 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -23.74 11.29 55.43 0.63 -23.11 16 9 Si 0.88 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.52 -10.14 3.67 -221.52 -0.81 -10.96 16 14 C 0.10 1.84 3.85 -4.97 -0.02 1.82 16 15 C -0.06 -0.93 5.05 -104.62 -0.53 -1.46 16 16 C -0.10 -1.57 9.72 -39.58 -0.38 -1.95 16 17 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 18 C -0.14 -1.75 10.05 -39.58 -0.40 -2.14 16 19 C -0.13 -1.68 10.05 -39.58 -0.40 -2.08 16 20 C -0.12 -1.78 8.39 -39.58 -0.33 -2.12 16 21 C 0.10 1.73 2.10 -67.71 -0.14 1.59 16 22 C -0.11 -1.86 5.17 -26.73 -0.14 -2.00 16 23 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 24 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 25 C -0.12 -1.84 5.92 -26.74 -0.16 -2.00 16 26 C -0.15 -2.82 3.61 -26.74 -0.10 -2.92 16 27 H 0.05 0.99 7.62 -51.93 -0.40 0.59 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 2.31 5.95 -51.93 -0.31 2.00 16 31 H 0.03 0.66 6.68 -51.92 -0.35 0.31 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.05 0.89 4.97 -51.93 -0.26 0.63 16 34 H 0.08 1.65 6.34 -51.93 -0.33 1.32 16 35 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.11 1.68 7.96 -52.49 -0.42 1.26 16 40 H 0.06 1.05 6.30 -51.93 -0.33 0.72 16 41 H 0.07 1.36 6.23 -51.93 -0.32 1.04 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.05 1.00 5.71 -51.93 -0.30 0.71 16 50 H 0.11 2.36 5.53 -51.93 -0.29 2.07 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -25.05 365.74 -11.59 -36.65 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.47 Total: 7.49 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: -3.43 Total: -30.97 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: -0.19 Total: -34.07 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -25.05 -11.59 -36.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.472 kcal (2) G-P(sol) polarization free energy of solvation -25.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds