Wall clock time and date at job start Tue Mar 31 2020 07:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47368 * 2 1 4 4 H 1.09007 * 109.46860 * 304.90493 * 3 2 1 5 5 C 1.50696 * 109.47308 * 184.90702 * 3 2 1 6 6 H 1.08000 * 119.99548 * 239.99816 * 5 3 2 7 7 C 1.37873 * 120.00432 * 59.99484 * 5 3 2 8 8 N 1.31518 * 119.99611 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00376 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46635 * 60.00228 * 9 7 5 11 11 H 1.48494 * 109.47196 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47147 * 300.00497 * 9 7 5 13 13 N 1.46902 * 109.47028 * 64.90081 * 3 2 1 14 14 C 1.46903 * 110.99848 * 75.98130 * 13 3 2 15 15 C 1.50698 * 109.46833 * 199.90908 * 14 13 3 16 16 C 1.38235 * 120.00180 * 84.85775 * 15 14 13 17 17 C 1.38237 * 119.99976 * 179.72283 * 16 15 14 18 18 C 1.38238 * 119.99836 * 0.28028 * 17 16 15 19 19 C 1.38231 * 119.99978 * 359.95192 * 18 17 16 20 20 C 1.38234 * 119.99708 * 265.06820 * 15 14 13 21 21 C 1.46904 * 110.99660 * 199.92894 * 13 3 2 22 22 C 1.53001 * 109.46928 * 65.58248 * 21 13 3 23 23 C 1.53004 * 109.47147 * 179.97438 * 22 21 13 24 24 C 1.53002 * 109.46978 * 59.99497 * 23 22 21 25 25 C 1.52997 * 109.47148 * 300.00482 * 24 23 22 26 26 C 1.52995 * 109.47348 * 60.00246 * 25 24 23 27 27 H 1.09002 * 109.47179 * 304.82073 * 1 2 3 28 28 H 1.08998 * 109.46869 * 64.82208 * 1 2 3 29 29 H 1.09001 * 109.47010 * 184.82403 * 1 2 3 30 30 H 1.08996 * 109.47658 * 239.99734 * 2 1 3 31 31 H 1.09007 * 109.47104 * 119.99532 * 2 1 3 32 32 H 0.97006 * 119.99703 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47171 * 79.90532 * 14 13 3 34 34 H 1.09002 * 109.46819 * 319.90334 * 14 13 3 35 35 H 1.07999 * 119.99796 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.99778 * 180.25236 * 17 16 15 37 37 H 1.07997 * 119.99688 * 179.97438 * 18 17 16 38 38 H 1.07998 * 120.00168 * 180.02562 * 19 18 17 39 39 H 1.07997 * 120.00448 * 0.04785 * 20 15 14 40 40 H 1.09001 * 109.46581 * 185.57782 * 21 13 3 41 41 H 1.09001 * 109.47109 * 299.99210 * 22 21 13 42 42 H 1.09002 * 109.47570 * 59.99595 * 22 21 13 43 43 H 1.09001 * 109.46637 * 299.99702 * 23 22 21 44 44 H 1.08996 * 109.46987 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46788 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.46544 * 60.00425 * 24 23 22 47 47 H 1.09001 * 109.46853 * 299.99277 * 25 24 23 48 48 H 1.09000 * 109.46644 * 180.02562 * 25 24 23 49 49 H 1.09005 * 109.47097 * 180.02562 * 26 25 24 50 50 H 1.08994 * 109.47681 * 59.99941 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9811 -0.8429 5 6 3.5421 1.4442 -0.1215 6 1 4.1461 1.8893 0.6553 7 6 4.1452 0.8777 -1.2243 8 7 3.4096 0.3361 -2.1705 9 14 6.0071 0.8804 -1.3753 10 1 6.5978 0.1472 -0.2270 11 1 6.4020 0.2151 -2.6428 12 1 6.5016 2.2807 -1.3756 13 7 1.6494 2.1000 1.2542 14 6 2.4967 1.6543 2.3684 15 6 1.8000 1.9382 3.6741 16 6 0.8840 1.0346 4.1796 17 6 0.2492 1.2923 5.3802 18 6 0.5259 2.4564 6.0724 19 6 1.4383 3.3622 5.5646 20 6 2.0736 3.1043 4.3642 21 6 1.6874 3.5620 1.1162 22 6 0.6217 4.0074 0.1127 23 6 0.6609 5.5302 -0.0306 24 6 2.0421 5.9602 -0.5289 25 6 3.1077 5.5147 0.4745 26 6 3.0686 3.9920 0.6178 27 1 -0.3634 0.5868 0.8437 28 1 -0.3633 0.4372 -0.9300 29 1 -0.3633 -1.0240 0.0864 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8339 -0.0628 -2.9462 33 1 3.4461 2.1889 2.3393 34 1 2.6799 0.5834 2.2797 35 1 0.6675 0.1253 3.6385 36 1 -0.4634 0.5844 5.7770 37 1 0.0296 2.6579 7.0102 38 1 1.6548 4.2715 6.1056 39 1 2.7860 3.8122 3.9673 40 1 1.4907 4.0235 2.0839 41 1 0.8184 3.5459 -0.8550 42 1 -0.3623 3.7014 0.4679 43 1 0.4639 5.9914 0.9372 44 1 -0.0986 5.8475 -0.7452 45 1 2.0698 7.0450 -0.6315 46 1 2.2389 5.4989 -1.4967 47 1 2.9108 5.9761 1.4423 48 1 4.0916 5.8215 0.1197 49 1 3.8275 3.6747 1.3331 50 1 3.2655 3.5308 -0.3499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166329.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:41 Heat of formation + Delta-G solvation = 0.428075 kcal Electronic energy + Delta-G solvation = -26640.811685 eV Core-core repulsion = 23438.425815 eV Total energy + Delta-G solvation = -3202.385871 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 301.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93249 -39.51806 -37.28137 -34.75160 -33.25138 -32.25485 -31.63677 -31.52789 -29.62550 -28.31558 -26.28724 -24.53603 -23.39435 -23.25139 -22.51587 -22.03337 -21.16193 -19.55594 -18.29922 -17.43923 -16.97392 -16.63623 -16.00748 -15.78267 -15.71786 -15.37831 -14.94125 -14.82206 -14.73540 -14.23346 -14.07295 -13.78798 -13.63160 -13.47804 -13.30942 -13.09458 -13.04243 -12.89812 -12.76382 -12.48645 -12.37417 -12.22468 -11.91921 -11.76884 -11.68782 -11.62452 -11.51158 -11.29508 -11.23197 -11.02566 -10.78536 -10.54173 -10.33147 -9.67010 -9.47882 -8.75258 -7.95645 -6.10094 0.60379 0.64645 1.36809 1.39417 1.44127 2.43219 2.98669 3.23193 3.58698 3.93544 4.02928 4.09024 4.13168 4.26546 4.33199 4.39844 4.43251 4.49311 4.62420 4.66172 4.73159 4.77623 4.77795 4.81365 4.82992 4.85734 4.91964 4.96709 4.99724 5.08851 5.22905 5.25900 5.29170 5.32532 5.33596 5.37507 5.46958 5.48860 5.52980 5.55445 5.65737 5.70698 5.72860 5.74469 5.84489 5.89695 5.95421 6.17467 6.26592 6.31721 6.52009 6.82268 7.06394 7.54696 8.99490 Molecular weight = 301.21amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.006315 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.758154 B = 4432.775668 C = 5255.686475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.223 3.777 4 H 0.017 0.983 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.929 3.071 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.519 5.519 14 C 0.109 3.891 15 C -0.076 4.076 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.127 4.127 21 C 0.100 3.900 22 C -0.104 4.104 23 C -0.107 4.107 24 C -0.115 4.115 25 C -0.112 4.112 26 C -0.143 4.143 27 H 0.057 0.943 28 H 0.029 0.971 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.257 0.743 33 H 0.030 0.970 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.041 0.959 47 H 0.067 0.933 48 H 0.051 0.949 49 H 0.038 0.962 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 8.124 11.882 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.034 0.966 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.757 3.243 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.241 5.241 14 C -0.019 4.019 15 C -0.077 4.077 16 C -0.135 4.135 17 C -0.143 4.143 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.146 4.146 21 C -0.009 4.009 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.152 4.152 25 C -0.151 4.151 26 C -0.182 4.182 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.335 7.870 11.794 15.529 hybrid contribution 2.282 -0.359 -1.012 2.522 sum -4.053 7.511 10.781 13.751 Atomic orbital electron populations 1.21554 0.96687 0.99622 1.00332 1.21422 0.94181 0.98952 0.99748 1.19067 0.91719 0.90953 0.86629 0.96571 1.22104 0.93968 1.35788 1.04872 0.92313 1.25456 1.00409 0.95661 0.96158 1.69992 1.35716 1.39612 1.09897 0.86057 0.83219 0.78026 0.76998 1.20342 1.21506 1.20187 1.62530 1.51499 1.05319 1.04722 1.20744 0.93343 0.99576 0.88239 1.20035 0.97114 0.95050 0.95469 1.21100 0.96510 0.99483 0.96431 1.21376 0.99943 0.98218 0.94723 1.21405 0.98453 0.94157 1.00763 1.21352 0.96934 1.00272 0.95553 1.21145 1.00848 0.96536 0.96077 1.21501 0.93555 0.88065 0.97787 1.21511 0.98269 0.96119 0.98333 1.21455 0.96932 0.94433 1.01660 1.21495 0.94950 1.00702 0.98088 1.21510 0.98491 0.95477 0.99584 1.22371 0.97959 0.95689 1.02210 0.92445 0.95135 0.94011 0.92167 0.95738 0.93375 0.95197 0.92453 0.87021 0.84380 0.83713 0.84149 0.86744 0.91016 0.94292 0.92331 0.91033 0.91234 0.90464 0.94016 0.91428 0.92996 0.94307 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.86 71.98 0.71 -4.30 16 2 C -0.10 -4.92 5.28 30.59 0.16 -4.76 16 3 C 0.22 10.56 1.16 44.17 0.05 10.61 16 4 H 0.02 0.88 5.84 -2.38 -0.01 0.86 16 5 C -0.53 -27.00 4.99 25.60 0.13 -26.87 16 6 H 0.06 3.00 4.57 -2.91 -0.01 2.99 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -51.33 11.29 21.45 0.24 -51.09 16 9 Si 0.93 43.33 29.54 68.60 2.03 45.36 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 N -0.52 -20.77 3.67 -854.75 -3.14 -23.91 16 14 C 0.11 4.22 3.85 85.56 0.33 4.55 16 15 C -0.08 -2.49 5.05 -19.87 -0.10 -2.59 16 16 C -0.12 -3.52 9.72 22.27 0.22 -3.31 16 17 C -0.12 -3.02 10.05 22.27 0.22 -2.80 16 18 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 19 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 20 C -0.13 -3.64 8.39 22.27 0.19 -3.45 16 21 C 0.10 3.59 2.10 44.91 0.09 3.69 16 22 C -0.10 -3.59 5.17 30.60 0.16 -3.43 16 23 C -0.11 -2.90 5.92 30.60 0.18 -2.72 16 24 C -0.11 -3.22 5.92 30.59 0.18 -3.04 16 25 C -0.11 -3.40 5.92 30.59 0.18 -3.22 16 26 C -0.14 -5.43 3.61 30.59 0.11 -5.32 16 27 H 0.06 2.22 7.62 -2.39 -0.02 2.20 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 3.23 5.95 -2.39 -0.01 3.22 16 31 H 0.02 1.14 6.68 -2.38 -0.02 1.12 16 32 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 33 H 0.03 1.23 4.97 -2.39 -0.01 1.22 16 34 H 0.06 2.45 6.34 -2.39 -0.02 2.44 16 35 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.11 3.20 7.96 -2.91 -0.02 3.17 16 40 H 0.07 2.44 6.30 -2.39 -0.02 2.43 16 41 H 0.04 1.58 6.23 -2.39 -0.01 1.56 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.04 1.54 5.71 -2.38 -0.01 1.52 16 50 H 0.07 3.06 5.53 -2.39 -0.01 3.05 16 Total: -1.00 -56.65 365.74 3.73 -52.92 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.90 Total: 27.28 kcal Atomic # 6 Polarization: -54.26 SS G_CDS: 3.71 Total: -50.55 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.90 Total: -75.00 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -56.65 3.73 -52.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166329.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.344 kcal (2) G-P(sol) polarization free energy of solvation -56.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds