Wall clock time and date at job start Tue Mar 31 2020 07:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 S 1.81401 * 109.47149 * 179.97438 * 10 9 7 12 12 O 1.42093 * 110.54547 * 291.62539 * 11 10 9 13 13 O 1.42105 * 110.53941 * 68.37879 * 11 10 9 14 14 O 1.52202 * 104.44855 * 179.97438 * 11 10 9 15 15 C 1.35915 * 113.99848 * 75.00118 * 14 11 10 16 16 C 1.38854 * 119.95493 * 89.99701 * 15 14 11 17 17 C 1.38491 * 120.27113 * 180.02562 * 16 15 14 18 18 F 1.35096 * 119.90914 * 179.97438 * 17 16 15 19 19 C 1.38172 * 120.18460 * 0.02562 * 17 16 15 20 20 C 1.39814 * 119.90964 * 359.97160 * 19 17 16 21 21 C 1.47188 * 120.13787 * 179.97438 * 20 19 17 22 22 O 1.21254 * 119.99572 * 0.02562 * 21 20 19 23 23 C 1.38392 * 119.95633 * 269.72758 * 15 14 11 24 24 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 26 26 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 29 29 H 1.08001 * 119.86243 * 0.02562 * 16 15 14 30 30 H 1.08003 * 120.04753 * 179.97438 * 19 17 16 31 31 H 1.08001 * 120.00121 * 180.02562 * 21 20 19 32 32 H 1.08002 * 120.09312 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3380 -5.2331 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 8 2.4245 -6.2989 0.0006 15 6 3.0450 -6.4566 1.1995 16 6 2.5479 -7.3665 2.1231 17 6 3.1747 -7.5320 3.3469 18 9 2.6845 -8.4190 4.2403 19 6 4.2994 -6.7918 3.6572 20 6 4.8065 -5.8735 2.7328 21 6 6.0039 -5.0819 3.0583 22 8 6.5530 -5.2259 4.1298 23 6 4.1747 -5.7141 1.4959 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6240 -2.5566 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 1.6689 -7.9475 1.8861 30 1 4.7862 -6.9223 4.6124 31 1 6.3935 -4.3729 2.3429 32 1 4.5641 -5.0098 0.7756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185196306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:32 Heat of formation + Delta-G solvation = -160.027355 kcal Electronic energy + Delta-G solvation = -22146.264902 eV Core-core repulsion = 18307.853768 eV Total energy + Delta-G solvation = -3838.411134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 302.050 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.30120 -41.30503 -39.62684 -37.66019 -36.92061 -35.82775 -34.06230 -31.84722 -31.35149 -30.63695 -25.95894 -25.57815 -23.85690 -22.27053 -21.82963 -20.17403 -18.51784 -17.92037 -17.80881 -16.96794 -16.75509 -16.66129 -15.97428 -15.93069 -15.72641 -15.18036 -14.89138 -14.64031 -14.58559 -14.21520 -13.63717 -13.04477 -12.99398 -12.65074 -12.32598 -12.24407 -12.10346 -11.91197 -11.90330 -11.78933 -11.18137 -11.10562 -10.53456 -10.51194 -10.30741 -9.87618 -9.56025 -9.35926 -9.20453 -8.59279 -6.21275 -4.27670 -0.08553 0.16001 0.75828 1.88946 2.17841 3.02876 3.19992 3.27656 3.29921 3.50104 3.80763 3.89454 4.12157 4.29203 4.31507 4.34317 4.49107 4.60297 4.84329 5.14050 5.18005 5.33271 5.41964 5.44192 5.50114 5.56313 5.72438 6.24575 6.27690 6.94536 7.16900 7.22232 7.70898 8.05675 8.75526 9.37948 10.89720 Molecular weight = 302.05amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.004887 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.683241 B = 5728.029419 C = 7036.857004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.610 4.610 11 S 2.568 3.432 12 O -0.956 6.956 13 O -0.929 6.929 14 O -0.670 6.670 15 C 0.099 3.901 16 C -0.101 4.101 17 C 0.110 3.890 18 F -0.125 7.125 19 C -0.086 4.086 20 C -0.146 4.146 21 C 0.390 3.610 22 O -0.449 6.449 23 C -0.091 4.091 24 H 0.266 0.734 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.123 0.877 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.356 -13.217 4.039 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.562 4.562 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.741 4.741 11 S 2.668 3.332 12 O -0.955 6.955 13 O -0.927 6.927 14 O -0.628 6.628 15 C 0.057 3.943 16 C -0.121 4.121 17 C 0.090 3.910 18 F -0.103 7.103 19 C -0.105 4.105 20 C -0.147 4.147 21 C 0.247 3.753 22 O -0.321 6.321 23 C -0.111 4.111 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.139 0.861 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.963 -13.854 4.452 17.636 hybrid contribution 0.333 1.242 -0.203 1.302 sum 10.296 -12.612 4.249 16.826 Atomic orbital electron populations 1.69959 1.06150 1.27254 1.49293 1.25068 0.94975 0.99607 0.94761 0.86403 0.79886 0.83093 0.77840 1.19599 1.20754 1.20771 1.20997 0.93090 0.89554 1.52522 0.91859 1.18973 0.92494 0.90207 0.99191 1.30726 1.14333 1.18509 1.10570 1.06339 0.75208 0.76937 0.74713 1.93609 1.72377 1.83808 1.45690 1.93608 1.69843 1.84346 1.44895 1.85822 1.65109 1.72344 1.39549 1.17419 0.94834 0.99961 0.82056 1.21483 1.00688 0.98112 0.91853 1.17108 0.94566 0.91785 0.87535 1.91571 1.87087 1.65543 1.66148 1.21578 0.94131 0.93760 1.01062 1.20631 1.00005 1.00041 0.94014 1.24117 0.81040 0.81467 0.88679 1.90553 1.55577 1.60741 1.25213 1.21734 0.93519 0.98706 0.97128 0.92467 0.94576 0.94575 0.85923 0.85225 0.82441 0.82590 0.86121 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -13.53 9.11 -34.44 -0.31 -13.84 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 10 C -0.61 -10.44 5.40 37.16 0.20 -10.24 16 11 S 2.57 43.84 5.17 -107.50 -0.56 43.28 16 12 O -0.96 -18.04 16.26 -67.03 -1.09 -19.13 16 13 O -0.93 -18.87 18.09 -67.04 -1.21 -20.08 16 14 O -0.67 -9.33 10.05 -51.80 -0.52 -9.85 16 15 C 0.10 1.23 4.79 -39.30 -0.19 1.04 16 16 C -0.10 -1.21 9.01 -39.26 -0.35 -1.56 16 17 C 0.11 1.20 7.28 -39.51 -0.29 0.91 16 18 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 19 C -0.09 -0.84 9.57 -39.02 -0.37 -1.22 16 20 C -0.15 -1.33 5.87 -105.09 -0.62 -1.95 16 21 C 0.39 3.14 11.46 34.37 0.39 3.53 16 22 O -0.45 -5.16 17.16 5.58 0.10 -5.06 16 23 C -0.09 -0.87 8.20 -38.94 -0.32 -1.19 16 24 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.12 1.76 6.62 -51.92 -0.34 1.42 16 28 H 0.13 1.91 8.14 -51.92 -0.42 1.48 16 29 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.16 1.36 7.64 -52.48 -0.40 0.95 16 31 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.16 1.06 7.52 -52.49 -0.39 0.67 16 LS Contribution 307.65 15.07 4.64 4.64 Total: -1.00 -34.19 307.65 -7.78 -41.97 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.79 Total: -2.50 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -2.09 Total: -22.45 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.74 Total: -24.72 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -2.73 Total: -54.12 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 43.84 SS G_CDS: -0.56 Total: 43.28 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.19 -7.78 -41.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185196306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.058 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds