Wall clock time and date at job start Tue Mar 31 2020 07:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30538 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48507 * 109.47190 * 239.99868 * 3 2 1 5 5 H 1.48497 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47026 * 119.99992 * 3 2 1 7 7 C 1.40326 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.41828 * 120.00037 * 359.97438 * 7 2 1 10 10 O 1.21808 * 119.99854 * 0.02562 * 9 7 2 11 11 C 1.47536 * 120.00295 * 180.02562 * 9 7 2 12 12 C 1.39845 * 120.19868 * 0.02562 * 11 9 7 13 13 C 1.37704 * 119.89634 * 180.02562 * 12 11 9 14 14 C 1.38687 * 120.32083 * 359.97434 * 13 12 11 15 15 C 1.38087 * 120.41805 * 0.02562 * 14 13 12 16 16 C 1.38667 * 120.09179 * 359.97438 * 15 14 13 17 17 O 1.35641 * 120.15866 * 179.97438 * 16 15 14 18 18 C 1.42892 * 117.00088 * 354.35595 * 17 16 15 19 19 C 1.53011 * 109.47058 * 98.34698 * 18 17 16 20 20 Cl 1.80299 * 109.46796 * 295.00150 * 19 18 17 21 21 C 1.53000 * 109.47205 * 218.34555 * 18 17 16 22 22 Cl 1.80297 * 109.47084 * 65.00303 * 21 18 17 23 23 H 0.97002 * 119.99388 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.05849 * 359.97438 * 12 11 9 25 25 H 1.07996 * 119.84278 * 180.02562 * 13 12 11 26 26 H 1.08006 * 119.78892 * 179.74221 * 14 13 12 27 27 H 1.08006 * 119.95534 * 179.97438 * 15 14 13 28 28 H 1.08994 * 109.47397 * 338.34671 * 18 17 16 29 29 H 1.09004 * 109.46413 * 54.99934 * 19 18 17 30 30 H 1.08996 * 109.47108 * 175.00005 * 19 18 17 31 31 H 1.09005 * 109.47444 * 185.00458 * 21 18 17 32 32 H 1.09004 * 109.47139 * 305.00308 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 3.0933 1.6964 -1.2125 5 1 1.2745 2.7464 0.0006 6 1 3.0932 1.6963 1.2125 7 6 2.0070 -1.2153 -0.0005 8 1 3.0870 -1.2153 -0.0001 9 6 1.2978 -2.4435 -0.0005 10 8 0.0798 -2.4435 -0.0005 11 6 2.0354 -3.7213 -0.0005 12 6 3.4339 -3.7262 0.0000 13 6 4.1160 -4.9224 -0.0005 14 6 3.4229 -6.1237 -0.0011 15 6 2.0421 -6.1341 -0.0016 16 6 1.3378 -4.9396 -0.0011 17 8 -0.0186 -4.9483 -0.0021 18 6 -0.6591 -6.2193 -0.1290 19 6 -1.0752 -6.7212 1.2553 20 17 0.3965 -7.0259 2.2513 21 6 -1.8989 -6.0795 -1.0146 22 17 -1.3956 -5.6301 -2.6865 23 1 -0.4849 0.8401 -0.0004 24 1 3.9781 -2.7934 0.0000 25 1 5.1960 -4.9252 0.0003 26 1 3.9666 -7.0569 -0.0057 27 1 1.5099 -7.0739 -0.0025 28 1 0.0318 -6.9309 -0.5809 29 1 -1.6949 -5.9688 1.7433 30 1 -1.6415 -7.6466 1.1512 31 1 -2.4366 -7.0274 -1.0394 32 1 -2.5489 -5.3036 -0.6099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:37 Heat of formation + Delta-G solvation = -68.309010 kcal Electronic energy + Delta-G solvation = -20343.768607 eV Core-core repulsion = 16935.627347 eV Total energy + Delta-G solvation = -3408.141260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 302.026 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.76414 -37.42047 -35.94013 -35.86071 -35.71776 -32.73157 -32.38056 -30.48166 -28.94508 -26.74318 -26.61315 -23.16883 -22.56316 -20.51039 -19.71804 -17.85045 -16.47508 -15.68968 -15.62191 -15.36681 -14.75845 -14.44560 -14.11083 -13.70197 -13.41948 -13.27937 -13.22625 -12.88147 -12.51666 -12.28831 -11.62679 -11.43422 -11.35589 -11.23745 -11.08708 -10.83127 -10.65936 -10.50488 -10.33798 -10.23728 -10.08050 -10.05856 -9.93184 -8.88157 -8.07160 -7.37231 -7.28997 -6.17440 -4.77320 1.89540 2.02327 2.14289 2.49040 3.12453 3.17320 3.19379 3.49527 4.08004 4.14981 4.47842 4.61347 4.75447 4.78263 4.94661 5.10509 5.32487 5.39962 5.46849 5.61267 5.76646 5.94525 6.00786 6.26347 6.38551 6.76607 6.97103 7.03069 7.22400 7.35930 7.53103 8.09036 8.13293 8.90572 8.96343 10.44004 10.67927 Molecular weight = 302.03amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.005761 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.708645 B = 4859.102114 C = 5646.143233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.082 3.918 3 Si 0.902 3.098 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.070 0.930 9 C 0.393 3.607 10 O -0.517 6.517 11 C -0.132 4.132 12 C -0.063 4.063 13 C -0.173 4.173 14 C -0.095 4.095 15 C -0.214 4.214 16 C 0.153 3.847 17 O -0.248 6.248 18 C 0.053 3.947 19 C -0.057 4.057 20 Cl -0.162 7.162 21 C -0.033 4.033 22 Cl -0.159 7.159 23 H 0.272 0.728 24 H 0.133 0.867 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.851 -13.518 0.247 13.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.089 0.911 9 C 0.287 3.713 10 O -0.404 6.404 11 C -0.134 4.134 12 C -0.081 4.081 13 C -0.192 4.192 14 C -0.114 4.114 15 C -0.232 4.232 16 C 0.107 3.893 17 O -0.160 6.160 18 C -0.006 4.006 19 C -0.120 4.120 20 Cl -0.135 7.135 21 C -0.096 4.096 22 Cl -0.133 7.133 23 H 0.083 0.917 24 H 0.151 0.849 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.633 -13.289 0.215 13.391 hybrid contribution 0.802 0.444 0.039 0.918 sum -0.831 -12.845 0.254 12.874 Atomic orbital electron populations 1.69958 1.07381 1.27829 1.31559 1.25932 0.94588 1.00692 0.92836 0.86508 0.80147 0.80957 0.79751 1.19003 1.20387 1.19021 1.20870 0.94709 0.91696 1.48147 0.91145 1.17942 0.88608 0.85287 0.79490 1.90531 1.14517 1.88108 1.47284 1.21510 0.93792 0.95559 1.02492 1.21377 0.93063 0.97929 0.95718 1.20930 0.99179 0.92713 1.06333 1.20756 0.93319 0.97457 0.99830 1.21092 0.95275 0.96559 1.10299 1.19259 0.81903 0.93401 0.94729 1.86574 1.16641 1.26107 1.86651 1.22889 0.95306 0.88777 0.93608 1.24850 0.89931 1.04048 0.93215 1.98744 1.44335 1.96732 1.73679 1.24320 0.97264 1.04288 0.83778 1.98743 1.92994 1.94575 1.26939 0.91702 0.84912 0.86932 0.87118 0.86208 0.88828 0.87356 0.87781 0.87571 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.48 11.73 55.57 0.65 -20.83 16 2 C 0.08 2.24 5.50 -17.32 -0.10 2.15 16 3 Si 0.90 19.65 29.56 -169.99 -5.03 14.63 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.52 -14.61 8.86 -37.43 -0.33 -14.94 16 8 H 0.07 1.79 6.02 -52.49 -0.32 1.47 16 9 C 0.39 11.30 6.91 -34.42 -0.24 11.06 16 10 O -0.52 -16.36 13.71 -16.74 -0.23 -16.59 16 11 C -0.13 -3.18 5.90 -104.69 -0.62 -3.80 16 12 C -0.06 -1.30 9.43 -39.18 -0.37 -1.67 16 13 C -0.17 -3.01 10.02 -39.61 -0.40 -3.40 16 14 C -0.10 -1.57 10.03 -39.47 -0.40 -1.97 16 15 C -0.21 -3.76 7.19 -39.48 -0.28 -4.05 16 16 C 0.15 3.27 6.24 -38.61 -0.24 3.02 16 17 O -0.25 -5.15 7.62 -40.45 -0.31 -5.45 16 18 C 0.05 0.75 2.23 -26.73 -0.06 0.69 16 19 C -0.06 -0.67 6.34 37.16 0.24 -0.43 16 20 Cl -0.16 -2.30 25.67 -51.86 -1.33 -3.63 16 21 C -0.03 -0.41 6.33 37.16 0.24 -0.18 16 22 Cl -0.16 -2.52 29.00 -51.86 -1.50 -4.02 16 23 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 24 H 0.13 2.64 6.20 -52.49 -0.33 2.32 16 25 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 27 H 0.12 1.81 4.83 -52.48 -0.25 1.56 16 28 H 0.09 1.26 5.49 -51.93 -0.28 0.98 16 29 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -34.20 303.12 -8.59 -42.79 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.85 Total: 2.04 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.56 Total: -13.50 kcal Atomic # 7 Polarization: -21.48 SS G_CDS: 0.65 Total: -20.83 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.54 Total: -22.04 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Atomic # 17 Polarization: -4.82 SS G_CDS: -2.84 Total: -7.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.20 -8.59 -42.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.524 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds