Wall clock time and date at job start Tue Mar 31 2020 08:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29494 * 1 3 3 Si 1.86800 * 120.00138 * 2 1 4 4 H 1.48502 * 109.46890 * 269.99820 * 3 2 1 5 5 H 1.48502 * 109.47203 * 29.99265 * 3 2 1 6 6 H 1.48500 * 109.47611 * 149.99830 * 3 2 1 7 7 C 1.46579 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00303 * 195.51253 * 7 2 1 9 9 C 1.39663 * 120.00129 * 15.51281 * 7 2 1 10 10 C 1.41655 * 120.19483 * 204.54750 * 9 7 2 11 11 C 1.35922 * 119.79093 * 180.02562 * 10 9 7 12 12 C 1.39997 * 120.20526 * 0.02562 * 11 10 9 13 13 N 1.38192 * 119.80571 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00306 * 146.14102 * 13 12 11 15 15 O 1.21590 * 120.00050 * 354.87013 * 14 13 12 16 16 C 1.47375 * 120.00033 * 174.88151 * 14 13 12 17 17 C 1.38094 * 126.41881 * 359.97151 * 16 14 13 18 18 N 1.34250 * 107.40815 * 180.26480 * 17 16 14 19 19 H 0.96996 * 125.75164 * 179.75363 * 18 17 16 20 20 N 1.39939 * 108.50166 * 359.61336 * 18 17 16 21 21 C 1.30446 * 108.90667 * 0.39426 * 20 18 17 22 22 N 1.48021 * 125.98603 * 179.76258 * 21 20 18 23 23 O 1.31693 * 119.99689 * 180.02562 * 22 21 20 24 24 O 1.31690 * 119.99967 * 0.02562 * 22 21 20 25 25 C 1.40007 * 120.39306 * 0.25049 * 12 11 10 26 26 C 1.35920 * 120.20374 * 359.48313 * 25 12 11 27 27 H 0.96994 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.10198 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.89317 * 179.97438 * 11 10 9 30 30 H 0.97004 * 119.99786 * 326.12890 * 13 12 11 31 31 H 1.07998 * 126.29406 * 359.97438 * 17 16 14 32 32 H 1.08006 * 119.89914 * 179.72999 * 25 12 11 33 33 H 1.08002 * 120.10345 * 180.25897 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.4765 2.0463 -1.4001 5 1 1.4264 2.6527 0.6999 6 1 3.5265 1.4402 0.7001 7 6 2.0279 -1.2694 0.0006 8 1 3.0784 -1.2863 0.2507 9 6 1.3678 -2.4571 -0.3224 10 6 1.8602 -3.6976 0.1522 11 6 1.2116 -4.8485 -0.1675 12 6 0.0607 -4.8105 -0.9637 13 7 -0.5919 -5.9857 -1.2842 14 6 -1.9334 -5.9980 -1.4134 15 8 -2.5780 -4.9994 -1.1573 16 6 -2.6190 -7.2220 -1.8648 17 6 -2.0216 -8.4238 -2.1900 18 7 -2.9968 -9.2712 -2.5552 19 1 -2.8720 -10.1900 -2.8397 20 7 -4.2240 -8.6064 -2.4533 21 6 -4.0108 -7.3855 -2.0464 22 7 -5.0455 -6.3525 -1.8156 23 8 -4.6964 -5.1516 -1.4029 24 8 -6.3151 -6.6344 -2.0229 25 6 -0.4298 -3.5895 -1.4419 26 6 0.2028 -2.4283 -1.1277 27 1 -0.4850 0.8400 -0.0004 28 1 2.7487 -3.7288 0.7655 29 1 1.5858 -5.7952 0.1931 30 1 -0.0844 -6.8018 -1.4163 31 1 -0.9640 -8.6406 -2.1607 32 1 -1.3159 -3.5699 -2.0591 33 1 -0.1794 -1.4869 -1.4941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548735540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:37 Heat of formation + Delta-G solvation = 112.132790 kcal Electronic energy + Delta-G solvation = -23236.122971 eV Core-core repulsion = 19462.115442 eV Total energy + Delta-G solvation = -3774.007529 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.085 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.39442 -39.37457 -38.57944 -37.01208 -34.47754 -34.21236 -33.13392 -32.80402 -31.31941 -29.45434 -28.95117 -27.36462 -25.05539 -23.45471 -21.97784 -21.28160 -20.97433 -19.74834 -18.93892 -17.90935 -17.55274 -17.48634 -16.77233 -16.55763 -16.11516 -15.27726 -15.05374 -14.55458 -14.30775 -13.90860 -13.65700 -12.95545 -12.71124 -12.18664 -11.96831 -11.83290 -11.53300 -11.28144 -11.21535 -11.15772 -10.92542 -10.89110 -10.48393 -10.44864 -9.95901 -9.82645 -9.64459 -9.48331 -9.16894 -8.68043 -7.49613 -7.07290 -6.85025 -4.23619 -0.62535 0.49233 0.76684 1.52824 2.06998 2.68243 3.00882 3.03593 3.07628 3.20661 3.50713 3.64762 3.67283 3.82118 4.05269 4.36641 4.52854 4.74445 5.15171 5.70835 5.76479 5.97276 6.15987 6.23960 6.44169 6.80237 6.84077 6.90836 7.05444 7.14042 7.35143 7.62457 7.68875 8.02097 8.07534 8.16802 8.29093 8.60471 8.77789 8.81218 9.07958 9.97150 Molecular weight = 302.08amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.003441 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.221091 B = 8135.505610 C = 9119.466672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.461 4.461 8 H 0.081 0.919 9 C 0.109 3.891 10 C -0.233 4.233 11 C -0.091 4.091 12 C -0.035 4.035 13 N -0.634 5.634 14 C 0.547 3.453 15 O -0.476 6.476 16 C -0.213 4.213 17 C 0.110 3.890 18 N -0.417 5.417 19 H 0.460 0.540 20 N -0.213 5.213 21 C 0.216 3.784 22 N -0.016 5.016 23 O -0.034 6.034 24 O -0.179 6.179 25 C -0.072 4.072 26 C -0.175 4.175 27 H 0.290 0.710 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.387 0.613 31 H 0.213 0.787 32 H 0.101 0.899 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 -16.017 -5.186 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.153 4.153 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.488 4.488 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.253 4.253 11 C -0.111 4.111 12 C -0.128 4.128 13 N -0.277 5.277 14 C 0.331 3.669 15 O -0.349 6.349 16 C -0.230 4.230 17 C -0.041 4.041 18 N -0.132 5.132 19 H 0.309 0.691 20 N -0.047 5.047 21 C -0.032 4.032 22 N 0.471 4.529 23 O -0.245 6.245 24 O -0.360 6.360 25 C -0.092 4.092 26 C -0.195 4.195 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.220 0.780 31 H 0.229 0.771 32 H 0.119 0.881 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.447 -16.426 -5.461 17.371 hybrid contribution 0.886 0.400 0.138 0.982 sum -0.561 -16.026 -5.323 16.896 Atomic orbital electron populations 1.69149 1.08711 1.30496 1.28783 1.27502 0.94485 1.01889 0.91463 0.86196 0.80652 0.79581 0.79624 1.18950 1.20059 1.18216 1.20630 0.96936 0.90003 1.41201 0.90053 1.17629 0.91315 0.91960 0.88442 1.20485 1.03866 0.92589 1.08315 1.19965 0.96226 0.96899 0.98006 1.16988 0.99607 0.84718 1.11438 1.42388 1.05039 1.11329 1.68969 1.17046 0.82664 0.86339 0.80893 1.91045 1.63939 1.32838 1.47072 1.20644 0.90229 0.97871 1.14254 1.23440 0.96776 0.88268 0.95575 1.46052 1.02614 1.14401 1.50122 0.69103 1.77188 1.03638 1.04340 1.19578 1.21572 0.87164 0.89006 1.05442 1.49262 1.01686 1.02327 0.99606 1.96575 1.87528 0.98761 1.41661 1.96294 0.94775 1.87635 1.57337 1.20384 0.98318 0.91612 0.98887 1.20995 0.99364 0.96669 1.02423 0.89800 0.88954 0.89605 0.78030 0.77090 0.88122 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.02 10.95 55.99 0.61 -18.41 16 2 C 0.07 1.77 5.34 -15.18 -0.08 1.69 16 3 Si 0.92 17.86 29.67 -169.99 -5.04 12.81 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.46 -11.90 9.28 -35.69 -0.33 -12.23 16 8 H 0.08 2.00 7.98 -52.48 -0.42 1.58 16 9 C 0.11 2.87 5.61 -106.76 -0.60 2.27 16 10 C -0.23 -5.52 9.76 -39.11 -0.38 -5.90 16 11 C -0.09 -1.92 9.89 -39.75 -0.39 -2.31 16 12 C -0.04 -0.76 6.28 -83.67 -0.53 -1.28 16 13 N -0.63 -10.28 5.25 -10.71 -0.06 -10.34 16 14 C 0.55 9.54 7.52 -12.54 -0.09 9.45 16 15 O -0.48 -10.68 10.65 -19.80 -0.21 -10.89 16 16 C -0.21 -2.78 6.13 -105.06 -0.64 -3.42 16 17 C 0.11 0.71 11.52 -16.55 -0.19 0.52 16 18 N -0.42 -2.47 7.29 30.86 0.22 -2.24 16 19 H 0.46 0.48 8.96 -182.72 -1.64 -1.16 16 20 N -0.21 -2.52 12.62 33.25 0.42 -2.10 16 21 C 0.22 3.23 8.28 -146.17 -1.21 2.02 16 22 N -0.02 -0.30 4.98 33.24 0.17 -0.13 16 23 O -0.03 -0.70 15.87 -40.19 -0.64 -1.34 16 24 O -0.18 -3.28 19.96 -31.56 -0.63 -3.91 16 25 C -0.07 -1.77 8.55 -39.75 -0.34 -2.11 16 26 C -0.17 -4.62 8.70 -39.11 -0.34 -4.96 16 27 H 0.29 6.59 8.27 -40.82 -0.34 6.25 16 28 H 0.09 2.05 8.06 -52.49 -0.42 1.62 16 29 H 0.09 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.39 4.25 7.74 -40.82 -0.32 3.94 16 31 H 0.21 0.26 7.47 -52.49 -0.39 -0.13 16 32 H 0.10 2.49 6.43 -52.48 -0.34 2.16 16 33 H 0.12 3.22 6.10 -52.49 -0.32 2.90 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -34.99 304.48 -9.10 -44.08 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.40 Total: 4.14 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -5.13 Total: -16.26 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 1.37 Total: -33.22 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -1.48 Total: -16.14 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.04 Total: 12.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.99 -9.10 -44.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548735540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.217 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds