Wall clock time and date at job start Tue Mar 31 2020 08:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29494 * 1 3 3 Si 1.86800 * 120.00138 * 2 1 4 4 H 1.48502 * 109.46890 * 269.99820 * 3 2 1 5 5 H 1.48502 * 109.47203 * 29.99265 * 3 2 1 6 6 H 1.48500 * 109.47611 * 149.99830 * 3 2 1 7 7 C 1.46579 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00303 * 195.51253 * 7 2 1 9 9 C 1.39663 * 120.00129 * 15.51281 * 7 2 1 10 10 C 1.41655 * 120.19483 * 204.54750 * 9 7 2 11 11 C 1.35922 * 119.79093 * 180.02562 * 10 9 7 12 12 C 1.39997 * 120.20526 * 0.02562 * 11 10 9 13 13 N 1.38192 * 119.80571 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00306 * 146.14102 * 13 12 11 15 15 O 1.21590 * 120.00050 * 354.87013 * 14 13 12 16 16 C 1.47375 * 120.00033 * 174.88151 * 14 13 12 17 17 C 1.38094 * 126.41881 * 359.97151 * 16 14 13 18 18 N 1.34250 * 107.40815 * 180.26480 * 17 16 14 19 19 H 0.96996 * 125.75164 * 179.75363 * 18 17 16 20 20 N 1.39939 * 108.50166 * 359.61336 * 18 17 16 21 21 C 1.30446 * 108.90667 * 0.39426 * 20 18 17 22 22 N 1.48021 * 125.98603 * 179.76258 * 21 20 18 23 23 O 1.31693 * 119.99689 * 180.02562 * 22 21 20 24 24 O 1.31690 * 119.99967 * 0.02562 * 22 21 20 25 25 C 1.40007 * 120.39306 * 0.25049 * 12 11 10 26 26 C 1.35920 * 120.20374 * 359.48313 * 25 12 11 27 27 H 0.96994 * 120.00020 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.10198 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.89317 * 179.97438 * 11 10 9 30 30 H 0.97004 * 119.99786 * 326.12890 * 13 12 11 31 31 H 1.07998 * 126.29406 * 359.97438 * 17 16 14 32 32 H 1.08006 * 119.89914 * 179.72999 * 25 12 11 33 33 H 1.08002 * 120.10345 * 180.25897 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.4765 2.0463 -1.4001 5 1 1.4264 2.6527 0.6999 6 1 3.5265 1.4402 0.7001 7 6 2.0279 -1.2694 0.0006 8 1 3.0784 -1.2863 0.2507 9 6 1.3678 -2.4571 -0.3224 10 6 1.8602 -3.6976 0.1522 11 6 1.2116 -4.8485 -0.1675 12 6 0.0607 -4.8105 -0.9637 13 7 -0.5919 -5.9857 -1.2842 14 6 -1.9334 -5.9980 -1.4134 15 8 -2.5780 -4.9994 -1.1573 16 6 -2.6190 -7.2220 -1.8648 17 6 -2.0216 -8.4238 -2.1900 18 7 -2.9968 -9.2712 -2.5552 19 1 -2.8720 -10.1900 -2.8397 20 7 -4.2240 -8.6064 -2.4533 21 6 -4.0108 -7.3855 -2.0464 22 7 -5.0455 -6.3525 -1.8156 23 8 -4.6964 -5.1516 -1.4029 24 8 -6.3151 -6.6344 -2.0229 25 6 -0.4298 -3.5895 -1.4419 26 6 0.2028 -2.4283 -1.1277 27 1 -0.4850 0.8400 -0.0004 28 1 2.7487 -3.7288 0.7655 29 1 1.5858 -5.7952 0.1931 30 1 -0.0844 -6.8018 -1.4163 31 1 -0.9640 -8.6406 -2.1607 32 1 -1.3159 -3.5699 -2.0591 33 1 -0.1794 -1.4869 -1.4941 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548735540.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:36 Heat of formation + Delta-G solvation = 87.152427 kcal Electronic energy + Delta-G solvation = -23237.206200 eV Core-core repulsion = 19462.115442 eV Total energy + Delta-G solvation = -3775.090759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.085 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.29244 -40.86196 -39.89879 -38.74875 -36.12359 -35.61070 -34.82887 -33.73752 -32.43806 -31.31022 -30.61803 -28.62469 -26.68898 -24.62444 -23.26801 -23.01275 -22.35360 -21.11324 -20.08878 -19.33108 -19.17691 -18.62566 -18.02960 -17.67760 -17.59337 -17.00185 -16.22108 -15.78878 -15.58399 -15.52712 -14.88529 -14.58148 -14.42649 -13.86578 -13.64133 -13.32017 -13.00706 -12.81452 -12.72710 -12.67238 -12.44063 -12.21258 -11.94180 -11.72169 -11.69029 -11.59978 -11.21829 -10.77736 -10.57036 -10.39489 -9.37265 -8.86787 -8.64206 -6.14351 -1.99870 -0.59463 0.04691 0.33865 0.98495 1.29728 1.38687 1.39571 1.52726 1.54146 2.17844 2.24279 2.24825 2.73816 2.76856 3.20115 3.50317 3.80662 4.02967 4.13321 4.48858 4.53842 4.58093 4.98725 5.00599 5.09629 5.27704 5.34479 5.57038 5.60179 5.75951 5.79980 5.96563 6.18137 6.20472 6.33659 6.72518 6.82520 6.90396 7.14168 7.52040 8.19856 Molecular weight = 302.08amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.003441 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.221091 B = 8135.505610 C = 9119.466672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.030 3.970 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.250 1.250 7 C -0.502 4.502 8 H 0.085 0.915 9 C 0.078 3.922 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.015 4.015 13 N -0.620 5.620 14 C 0.547 3.453 15 O -0.535 6.535 16 C -0.249 4.249 17 C 0.178 3.822 18 N -0.371 5.371 19 H 0.488 0.512 20 N -0.223 5.223 21 C 0.188 3.812 22 N -0.010 5.010 23 O -0.124 6.124 24 O -0.165 6.165 25 C -0.089 4.089 26 C -0.205 4.205 27 H 0.296 0.704 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.419 0.581 31 H 0.282 0.718 32 H 0.085 0.915 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -20.459 -5.709 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.192 4.192 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.173 1.173 7 C -0.529 4.529 8 H 0.103 0.897 9 C 0.075 3.925 10 C -0.263 4.263 11 C -0.103 4.103 12 C -0.109 4.109 13 N -0.266 5.266 14 C 0.334 3.666 15 O -0.411 6.411 16 C -0.266 4.266 17 C 0.025 3.975 18 N -0.090 5.090 19 H 0.344 0.656 20 N -0.059 5.059 21 C -0.058 4.058 22 N 0.469 4.531 23 O -0.315 6.315 24 O -0.357 6.357 25 C -0.109 4.109 26 C -0.225 4.225 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.156 0.844 30 H 0.258 0.742 31 H 0.297 0.703 32 H 0.103 0.897 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.873 -20.829 -5.954 21.681 hybrid contribution 0.078 1.261 0.169 1.275 sum 0.951 -19.568 -5.785 20.427 Atomic orbital electron populations 1.69225 1.10517 1.31798 1.30052 1.28452 0.95150 1.05311 0.90253 0.85053 0.79286 0.74587 0.79817 1.18406 1.19192 1.17273 1.20916 0.97366 0.91242 1.43339 0.89679 1.17971 0.91675 0.93665 0.89164 1.20786 1.04568 0.92621 1.08368 1.20361 0.95189 0.98244 0.96544 1.17009 0.99149 0.85428 1.09326 1.42116 1.04908 1.10896 1.68726 1.17614 0.82635 0.87091 0.79301 1.91054 1.65262 1.35624 1.49121 1.20281 0.89483 0.98637 1.18218 1.24305 0.98821 0.84743 0.89619 1.46155 1.00708 1.15197 1.46965 0.65650 1.77157 1.06620 1.03013 1.19154 1.21586 0.86777 0.89235 1.08176 1.49684 1.02221 1.02998 0.98148 1.96613 1.87490 1.00782 1.46644 1.96234 0.96638 1.87357 1.55506 1.20427 0.97952 0.92991 0.99524 1.20886 1.00842 0.96422 1.04318 0.89193 0.87538 0.84393 0.74232 0.70304 0.89727 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.94 10.95 23.22 0.25 -42.68 16 2 C 0.03 1.54 5.34 87.21 0.47 2.01 16 3 Si 0.99 37.70 29.67 68.60 2.04 39.73 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 6 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.50 -27.06 9.28 24.79 0.23 -26.83 16 8 H 0.09 4.32 7.98 -2.91 -0.02 4.30 16 9 C 0.08 4.26 5.61 -21.25 -0.12 4.14 16 10 C -0.24 -11.46 9.76 22.58 0.22 -11.24 16 11 C -0.08 -3.32 9.89 22.16 0.22 -3.10 16 12 C -0.02 -0.65 6.28 39.00 0.24 -0.40 16 13 N -0.62 -18.27 5.25 -306.07 -1.61 -19.88 16 14 C 0.55 18.65 7.52 86.65 0.65 19.30 16 15 O -0.53 -25.40 10.65 19.99 0.21 -25.18 16 16 C -0.25 -5.74 6.13 -20.15 -0.12 -5.87 16 17 C 0.18 1.05 11.52 84.29 0.97 2.02 16 18 N -0.37 -1.97 7.29 -56.29 -0.41 -2.38 16 19 H 0.49 -2.75 8.96 -213.43 -1.91 -4.66 16 20 N -0.22 -4.47 12.62 -48.73 -0.61 -5.08 16 21 C 0.19 5.39 8.28 130.80 1.08 6.47 16 22 N -0.01 -0.40 4.98 -48.76 -0.24 -0.64 16 23 O -0.12 -5.69 15.87 11.77 0.19 -5.50 16 24 O -0.17 -6.23 19.96 3.53 0.07 -6.16 16 25 C -0.09 -4.58 8.55 22.16 0.19 -4.39 16 26 C -0.20 -11.57 8.70 22.57 0.20 -11.38 16 27 H 0.30 14.38 8.27 -92.71 -0.77 13.61 16 28 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 30 H 0.42 6.67 7.74 -92.71 -0.72 5.95 16 31 H 0.28 -2.25 7.47 -2.91 -0.02 -2.28 16 32 H 0.08 4.55 6.43 -2.91 -0.02 4.53 16 33 H 0.09 5.48 6.10 -2.91 -0.02 5.46 16 Total: -1.00 -90.35 304.48 2.71 -87.64 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -1.40 Total: 9.41 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 4.23 Total: -29.27 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -2.62 Total: -70.67 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: 0.47 Total: -36.85 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.04 Total: 39.73 kcal Total: -90.35 2.71 -87.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548735540.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.795 kcal (2) G-P(sol) polarization free energy of solvation -90.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds