Wall clock time and date at job start Tue Mar 31 2020 08:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99696 * 2 1 4 4 O 1.21289 * 119.99642 * 179.72406 * 3 2 1 5 5 C 1.50693 * 120.00420 * 359.72682 * 3 2 1 6 6 H 1.09000 * 109.47311 * 59.99923 * 5 3 2 7 7 C 1.50705 * 109.47276 * 299.99854 * 5 3 2 8 8 H 1.08000 * 119.99579 * 325.44880 * 7 5 3 9 9 C 1.37877 * 120.00150 * 145.44857 * 7 5 3 10 10 N 1.31514 * 119.99937 * 5.25986 * 9 7 5 11 11 Si 1.86800 * 119.99643 * 185.26813 * 9 7 5 12 12 H 1.48495 * 109.47511 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47095 * 120.00293 * 11 9 7 14 14 H 1.48509 * 109.46669 * 239.99626 * 11 9 7 15 15 C 1.50702 * 109.47221 * 179.97438 * 5 3 2 16 16 C 1.38231 * 119.99903 * 66.11414 * 15 5 3 17 17 C 1.38234 * 120.00004 * 179.78922 * 16 15 5 18 18 C 1.38234 * 120.00265 * 0.43367 * 17 16 15 19 19 C 1.38239 * 119.99458 * 359.81801 * 18 17 16 20 20 C 1.38228 * 120.00054 * 359.97416 * 19 18 17 21 21 C 1.38997 * 119.99586 * 179.72376 * 2 1 3 22 22 N 1.29630 * 124.94001 * 179.97438 * 21 2 1 23 23 C 1.31988 * 116.91328 * 179.77710 * 22 21 2 24 24 C 1.33441 * 114.57266 * 0.51141 * 23 22 21 25 25 S 1.70971 * 124.94899 * 0.27510 * 21 2 1 26 26 H 1.08994 * 109.47282 * 90.00159 * 1 2 3 27 27 H 1.09002 * 109.47263 * 210.00066 * 1 2 3 28 28 H 1.09000 * 109.46960 * 329.99692 * 1 2 3 29 29 H 0.97001 * 119.99859 * 180.02562 * 10 9 7 30 30 H 1.08007 * 120.00473 * 359.97438 * 16 15 5 31 31 H 1.08011 * 120.00145 * 180.27388 * 17 16 15 32 32 H 1.07997 * 120.00149 * 179.83332 * 18 17 16 33 33 H 1.08005 * 119.99950 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.99934 * 180.02562 * 20 19 18 35 35 H 1.08007 * 122.71186 * 180.24589 * 23 22 21 36 36 H 1.08000 * 125.97152 * 179.73759 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0051 5 6 1.3854 2.4722 -0.0062 6 1 0.7551 2.5321 0.8810 7 6 0.5241 2.5492 -1.2405 8 1 0.8673 2.1121 -2.1665 9 6 -0.7020 3.1776 -1.1875 10 7 -1.0754 3.7993 -0.0903 11 14 -1.8329 3.1456 -2.6739 12 1 -1.1840 2.3871 -3.7734 13 1 -3.1135 2.4892 -2.3075 14 1 -2.0999 4.5359 -3.1226 15 6 2.3647 3.6177 -0.0043 16 6 3.1872 3.8256 -1.0956 17 6 4.0825 4.8789 -1.0957 18 6 4.1615 5.7189 -0.0007 19 6 3.3426 5.5078 1.0929 20 6 2.4444 4.4571 1.0911 21 6 2.1600 -1.2038 0.0058 22 7 3.4514 -1.3155 0.0059 23 6 3.9452 -2.5395 0.0164 24 6 3.0274 -3.5082 0.0149 25 16 1.4359 -2.7526 0.0065 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 -1.9381 4.2410 -0.0529 30 1 3.1284 3.1670 -1.9496 31 1 4.7220 5.0441 -1.9502 32 1 4.8628 6.5402 0.0004 33 1 3.4046 6.1638 1.9486 34 1 1.8043 4.2924 1.9453 35 1 5.0063 -2.7408 0.0214 36 1 3.2256 -4.5698 0.0183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414019708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:33 Heat of formation + Delta-G solvation = 52.478198 kcal Electronic energy + Delta-G solvation = -22142.520624 eV Core-core repulsion = 18912.219492 eV Total energy + Delta-G solvation = -3230.301132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 302.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10281 -38.75496 -37.72411 -35.11879 -33.79434 -31.20920 -29.96830 -29.60879 -27.56680 -26.39751 -24.99605 -23.68157 -21.68199 -21.58581 -20.18807 -18.49076 -17.78861 -16.87558 -16.19725 -15.84414 -15.62470 -15.17932 -14.69984 -14.51080 -14.16894 -13.86193 -13.37642 -13.06893 -12.90709 -12.61119 -12.42630 -12.35202 -12.03992 -11.71699 -11.61736 -11.16916 -11.11403 -11.06897 -10.47420 -10.31271 -10.10298 -9.95594 -9.52966 -9.42772 -9.01312 -8.85306 -8.56999 -7.97179 -7.69968 -7.66340 -6.39016 -4.45024 1.08259 1.34127 1.96924 2.34522 2.36792 3.09507 3.12065 3.21694 3.23740 3.26401 3.70589 4.18626 4.71747 4.91957 4.97809 5.40999 5.48488 5.66636 5.70348 5.76648 5.82234 5.93090 5.98559 6.16167 6.23939 6.38826 6.45407 6.54065 6.76455 6.82492 6.96119 7.07608 7.34305 7.40149 7.52618 7.57804 7.64956 7.87273 8.01301 8.25480 8.57079 8.92894 9.19573 10.68799 Molecular weight = 302.08amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.006298 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.470683 B = 4444.753139 C = 6090.163209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.520 5.520 3 C 0.519 3.481 4 O -0.492 6.492 5 C 0.059 3.941 6 H 0.093 0.907 7 C -0.516 4.516 8 H 0.064 0.936 9 C 0.077 3.923 10 N -0.874 5.874 11 Si 0.893 3.107 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.281 1.281 15 C -0.014 4.014 16 C -0.084 4.084 17 C -0.133 4.133 18 C -0.146 4.146 19 C -0.131 4.131 20 C -0.115 4.115 21 C 0.298 3.702 22 N -0.494 5.494 23 C 0.076 3.924 24 C -0.304 4.304 25 S 0.090 5.910 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.268 0.732 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.172 0.828 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 -8.047 1.451 8.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.249 5.249 3 C 0.308 3.692 4 O -0.361 6.361 5 C 0.038 3.962 6 H 0.111 0.889 7 C -0.554 4.554 8 H 0.083 0.917 9 C -0.129 4.129 10 N -0.509 5.509 11 Si 0.720 3.280 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.206 1.206 15 C -0.015 4.015 16 C -0.102 4.102 17 C -0.151 4.151 18 C -0.164 4.164 19 C -0.150 4.150 20 C -0.133 4.133 21 C -0.069 4.069 22 N -0.216 5.216 23 C -0.076 4.076 24 C -0.445 4.445 25 S 0.339 5.661 26 H 0.095 0.905 27 H 0.074 0.926 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.189 0.811 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.415 -7.669 1.529 7.947 hybrid contribution 0.155 -0.094 -0.853 0.872 sum 1.570 -7.763 0.675 7.949 Atomic orbital electron populations 1.22149 0.75771 1.03572 1.04137 1.45620 1.08082 1.01652 1.69541 1.22370 0.88189 0.85140 0.73545 1.90707 1.14143 1.86457 1.44810 1.18162 0.92280 0.83801 1.01989 0.88942 1.20698 1.01152 1.38718 0.94827 0.91744 1.24928 0.97663 0.94007 0.96287 1.69919 1.21571 1.32518 1.26931 0.86486 0.80427 0.78400 0.82670 1.19381 1.20414 1.20628 1.19927 0.92992 0.96352 0.92229 1.20822 0.94789 0.96514 0.98118 1.20951 0.99717 0.96433 0.98036 1.20814 1.00696 1.00114 0.94783 1.20899 0.97515 0.98454 0.98090 1.20958 0.98296 0.95869 0.98173 1.24215 0.91040 0.92068 0.99609 1.66649 1.08798 1.24115 1.22056 1.21656 1.01177 0.85549 0.99197 1.26621 0.93732 1.04288 1.19836 1.83759 1.10521 0.98773 1.73051 0.90495 0.92574 0.87133 0.92155 0.87143 0.87531 0.87644 0.87479 0.86968 0.81143 0.81052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 8.84 59.85 0.53 1.97 16 2 N -0.52 -10.36 3.07 -124.80 -0.38 -10.74 16 3 C 0.52 11.86 6.93 -10.99 -0.08 11.78 16 4 O -0.49 -12.47 14.05 5.55 0.08 -12.40 16 5 C 0.06 1.36 1.58 -94.08 -0.15 1.21 16 6 H 0.09 2.20 6.39 -51.93 -0.33 1.87 16 7 C -0.52 -12.23 5.53 -34.44 -0.19 -12.42 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.08 1.81 5.42 -17.82 -0.10 1.72 16 10 N -0.87 -21.53 12.85 55.43 0.71 -20.82 16 11 Si 0.89 18.81 29.54 -169.99 -5.02 13.78 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 C -0.01 -0.32 4.30 -104.63 -0.45 -0.77 16 16 C -0.08 -1.90 8.31 -39.59 -0.33 -2.22 16 17 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 18 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 19 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 20 C -0.11 -2.47 9.67 -39.59 -0.38 -2.86 16 21 C 0.30 5.64 7.68 -87.35 -0.67 4.97 16 22 N -0.49 -9.90 8.65 -15.12 -0.13 -10.04 16 23 C 0.08 1.17 11.34 -19.16 -0.22 0.96 16 24 C -0.30 -3.96 11.35 29.05 0.33 -3.63 16 25 S 0.09 1.27 21.70 -107.50 -2.33 -1.06 16 26 H 0.08 1.28 7.88 -51.93 -0.41 0.87 16 27 H 0.06 0.76 7.05 -51.93 -0.37 0.40 16 28 H 0.11 2.01 6.13 -51.93 -0.32 1.69 16 29 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 30 H 0.11 2.54 7.89 -52.48 -0.41 2.12 16 31 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 34 H 0.11 2.31 7.96 -52.48 -0.42 1.89 16 35 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 36 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -29.20 321.97 -9.04 -38.24 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.92 Total: 6.54 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.90 Total: -8.36 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.20 Total: -41.60 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.33 Total: -1.06 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.20 -9.04 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414019708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.713 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds