Wall clock time and date at job start Tue Mar 31 2020 08:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99696 * 2 1 4 4 O 1.21289 * 119.99642 * 179.72406 * 3 2 1 5 5 C 1.50693 * 120.00420 * 359.72682 * 3 2 1 6 6 H 1.09000 * 109.47311 * 59.99923 * 5 3 2 7 7 C 1.50705 * 109.47276 * 299.99854 * 5 3 2 8 8 H 1.08000 * 119.99579 * 325.44880 * 7 5 3 9 9 C 1.37877 * 120.00150 * 145.44857 * 7 5 3 10 10 N 1.31514 * 119.99937 * 5.25986 * 9 7 5 11 11 Si 1.86800 * 119.99643 * 185.26813 * 9 7 5 12 12 H 1.48495 * 109.47511 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47095 * 120.00293 * 11 9 7 14 14 H 1.48509 * 109.46669 * 239.99626 * 11 9 7 15 15 C 1.50702 * 109.47221 * 179.97438 * 5 3 2 16 16 C 1.38231 * 119.99903 * 66.11414 * 15 5 3 17 17 C 1.38234 * 120.00004 * 179.78922 * 16 15 5 18 18 C 1.38234 * 120.00265 * 0.43367 * 17 16 15 19 19 C 1.38239 * 119.99458 * 359.81801 * 18 17 16 20 20 C 1.38228 * 120.00054 * 359.97416 * 19 18 17 21 21 C 1.38997 * 119.99586 * 179.72376 * 2 1 3 22 22 N 1.29630 * 124.94001 * 179.97438 * 21 2 1 23 23 C 1.31988 * 116.91328 * 179.77710 * 22 21 2 24 24 C 1.33441 * 114.57266 * 0.51141 * 23 22 21 25 25 S 1.70971 * 124.94899 * 0.27510 * 21 2 1 26 26 H 1.08994 * 109.47282 * 90.00159 * 1 2 3 27 27 H 1.09002 * 109.47263 * 210.00066 * 1 2 3 28 28 H 1.09000 * 109.46960 * 329.99692 * 1 2 3 29 29 H 0.97001 * 119.99859 * 180.02562 * 10 9 7 30 30 H 1.08007 * 120.00473 * 359.97438 * 16 15 5 31 31 H 1.08011 * 120.00145 * 180.27388 * 17 16 15 32 32 H 1.07997 * 120.00149 * 179.83332 * 18 17 16 33 33 H 1.08005 * 119.99950 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.99934 * 180.02562 * 20 19 18 35 35 H 1.08007 * 122.71186 * 180.24589 * 23 22 21 36 36 H 1.08000 * 125.97152 * 179.73759 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0051 5 6 1.3854 2.4722 -0.0062 6 1 0.7551 2.5321 0.8810 7 6 0.5241 2.5492 -1.2405 8 1 0.8673 2.1121 -2.1665 9 6 -0.7020 3.1776 -1.1875 10 7 -1.0754 3.7993 -0.0903 11 14 -1.8329 3.1456 -2.6739 12 1 -1.1840 2.3871 -3.7734 13 1 -3.1135 2.4892 -2.3075 14 1 -2.0999 4.5359 -3.1226 15 6 2.3647 3.6177 -0.0043 16 6 3.1872 3.8256 -1.0956 17 6 4.0825 4.8789 -1.0957 18 6 4.1615 5.7189 -0.0007 19 6 3.3426 5.5078 1.0929 20 6 2.4444 4.4571 1.0911 21 6 2.1600 -1.2038 0.0058 22 7 3.4514 -1.3155 0.0059 23 6 3.9452 -2.5395 0.0164 24 6 3.0274 -3.5082 0.0149 25 16 1.4359 -2.7526 0.0065 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 -1.9381 4.2410 -0.0529 30 1 3.1284 3.1670 -1.9496 31 1 4.7220 5.0441 -1.9502 32 1 4.8628 6.5402 0.0004 33 1 3.4046 6.1638 1.9486 34 1 1.8043 4.2924 1.9453 35 1 5.0063 -2.7408 0.0214 36 1 3.2256 -4.5698 0.0183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414019708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:29 Heat of formation + Delta-G solvation = 37.186465 kcal Electronic energy + Delta-G solvation = -22143.183723 eV Core-core repulsion = 18912.219492 eV Total energy + Delta-G solvation = -3230.964231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 302.083 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.62125 -40.21526 -39.25782 -36.70935 -35.54375 -32.93929 -31.56306 -30.88843 -29.21017 -27.81149 -26.54342 -25.31048 -23.25358 -23.03997 -21.67548 -19.91526 -19.21958 -18.65216 -17.76934 -17.36420 -17.11670 -16.73309 -16.22791 -15.95349 -15.67466 -15.42707 -14.85370 -14.64090 -14.19686 -14.14111 -14.00095 -13.89808 -13.62425 -13.33036 -13.20839 -12.83881 -12.77845 -12.30130 -12.21216 -11.95164 -11.70386 -11.35122 -11.26571 -10.96476 -10.66527 -10.22088 -10.12860 -9.58107 -9.29932 -9.03106 -8.22220 -6.33063 -0.17590 0.09539 0.73440 0.77057 0.80750 1.41339 1.46880 1.55238 1.69370 1.87806 2.18287 2.42720 3.04179 3.21109 3.60822 4.10290 4.21190 4.26073 4.27616 4.40585 4.47580 4.49115 4.60491 4.62957 4.82920 4.91440 4.94187 5.04821 5.16689 5.29831 5.40570 5.49388 5.63805 5.76182 5.79801 5.88973 6.04449 6.18562 6.39394 6.68782 6.96604 7.27571 7.33811 8.85861 Molecular weight = 302.08amu Principal moments of inertia in cm(-1) A = 0.012545 B = 0.006298 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.470683 B = 4444.753139 C = 6090.163209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.527 5.527 3 C 0.517 3.483 4 O -0.529 6.529 5 C 0.066 3.934 6 H 0.076 0.924 7 C -0.514 4.514 8 H 0.047 0.953 9 C 0.046 3.954 10 N -0.897 5.897 11 Si 0.946 3.054 12 H -0.272 1.272 13 H -0.264 1.264 14 H -0.287 1.287 15 C -0.041 4.041 16 C -0.111 4.111 17 C -0.136 4.136 18 C -0.141 4.141 19 C -0.129 4.129 20 C -0.138 4.138 21 C 0.245 3.755 22 N -0.538 5.538 23 C 0.042 3.958 24 C -0.271 4.271 25 S 0.162 5.838 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.270 0.730 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.193 0.807 36 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 -9.286 1.378 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.255 5.255 3 C 0.305 3.695 4 O -0.402 6.402 5 C 0.044 3.956 6 H 0.094 0.906 7 C -0.552 4.552 8 H 0.066 0.934 9 C -0.157 4.157 10 N -0.534 5.534 11 Si 0.771 3.229 12 H -0.197 1.197 13 H -0.188 1.188 14 H -0.214 1.214 15 C -0.043 4.043 16 C -0.129 4.129 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.146 4.146 20 C -0.156 4.156 21 C -0.121 4.121 22 N -0.261 5.261 23 C -0.108 4.108 24 C -0.411 4.411 25 S 0.410 5.590 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.210 0.790 36 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 1.424 -8.957 1.459 9.186 hybrid contribution 0.219 0.125 -0.804 0.843 sum 1.644 -8.832 0.655 9.007 Atomic orbital electron populations 1.22157 0.74476 1.04310 1.04274 1.45420 1.08830 1.01782 1.69503 1.22232 0.87764 0.86156 0.73305 1.90655 1.15367 1.87288 1.46935 1.18013 0.92134 0.84599 1.00850 0.90597 1.20600 1.01582 1.38643 0.94364 0.93446 1.25427 0.98448 0.93596 0.98195 1.69998 1.21940 1.33188 1.28242 0.85689 0.79406 0.77815 0.79990 1.19693 1.18827 1.21366 1.20088 0.93904 0.96951 0.93314 1.20825 0.96562 0.97870 0.97684 1.21309 0.98993 0.95465 0.99580 1.21280 1.00590 1.00444 0.93575 1.21316 0.96190 0.97669 0.99465 1.21130 0.99595 0.96999 0.97882 1.24381 0.91750 0.93354 1.02625 1.66574 1.10340 1.27231 1.21944 1.22004 1.02823 0.84747 1.01218 1.27257 0.92696 1.05979 1.15161 1.83430 1.09957 0.94671 1.70900 0.90582 0.89180 0.89032 0.92029 0.89155 0.84830 0.83472 0.84062 0.87198 0.79028 0.76610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.06 8.84 127.77 1.13 4.19 16 2 N -0.53 -21.78 3.07 -667.15 -2.05 -23.84 16 3 C 0.52 25.07 6.93 87.66 0.61 25.68 16 4 O -0.53 -28.56 14.05 -3.06 -0.04 -28.60 16 5 C 0.07 3.20 1.58 -13.03 -0.02 3.18 16 6 H 0.08 3.88 6.39 -2.39 -0.02 3.86 16 7 C -0.51 -25.54 5.53 25.60 0.14 -25.40 16 8 H 0.05 2.47 7.82 -2.91 -0.02 2.44 16 9 C 0.05 2.26 5.42 84.65 0.46 2.71 16 10 N -0.90 -45.40 12.85 21.45 0.28 -45.12 16 11 Si 0.95 39.04 29.54 68.60 2.03 41.07 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 13 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 14 H -0.29 -12.16 7.11 99.48 0.71 -11.46 16 15 C -0.04 -2.02 4.30 -19.87 -0.09 -2.10 16 16 C -0.11 -5.21 8.31 22.27 0.19 -5.03 16 17 C -0.14 -5.31 10.05 22.27 0.22 -5.08 16 18 C -0.14 -4.94 10.05 22.27 0.22 -4.72 16 19 C -0.13 -4.78 10.05 22.27 0.22 -4.55 16 20 C -0.14 -6.11 9.67 22.27 0.22 -5.89 16 21 C 0.24 9.30 7.68 179.20 1.38 10.68 16 22 N -0.54 -21.85 8.65 -201.75 -1.75 -23.60 16 23 C 0.04 1.24 11.34 83.58 0.95 2.19 16 24 C -0.27 -6.09 11.35 66.73 0.76 -5.34 16 25 S 0.16 4.15 21.70 -56.49 -1.23 2.92 16 26 H 0.08 2.58 7.88 -2.39 -0.02 2.56 16 27 H 0.09 2.38 7.05 -2.39 -0.02 2.37 16 28 H 0.09 3.50 6.13 -2.39 -0.01 3.48 16 29 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 30 H 0.09 4.46 7.89 -2.91 -0.02 4.44 16 31 H 0.13 4.37 8.06 -2.90 -0.02 4.34 16 32 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 33 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.11 4.75 7.96 -2.91 -0.02 4.73 16 35 H 0.19 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.22 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -67.06 321.97 4.72 -62.34 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 1.10 Total: 24.31 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 6.38 Total: -9.48 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -3.52 Total: -92.56 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.04 Total: -28.60 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.23 Total: 2.92 kcal Total: -67.06 4.72 -62.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414019708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.525 kcal (2) G-P(sol) polarization free energy of solvation -67.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds