Wall clock time and date at job start Tue Mar 31 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47158 * 259.97571 * 7 6 5 9 9 S 1.65599 * 120.00129 * 165.00082 * 8 7 6 10 10 O 1.42098 * 104.27632 * 181.06974 * 9 8 7 11 11 O 1.42093 * 104.27561 * 308.92935 * 9 8 7 12 12 C 1.81397 * 104.44798 * 64.99924 * 9 8 7 13 13 C 1.53002 * 109.47285 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.47026 * 300.00271 * 13 12 9 15 15 C 1.52999 * 109.47128 * 59.99578 * 13 12 9 16 16 C 1.50693 * 109.47343 * 180.02562 * 13 12 9 17 17 H 1.08002 * 120.00270 * 359.97438 * 16 13 12 18 18 C 1.37883 * 120.00006 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99896 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 120.00054 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46972 * 90.00328 * 20 18 16 22 22 H 1.48498 * 109.47425 * 209.99725 * 20 18 16 23 23 H 1.48494 * 109.47225 * 330.00320 * 20 18 16 24 24 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 25 25 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 26 26 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 27 27 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 29 29 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 30 30 H 0.97005 * 119.99571 * 345.00176 * 8 7 6 31 31 H 1.09000 * 109.47741 * 300.00080 * 12 9 8 32 32 H 1.09000 * 109.47164 * 60.00254 * 12 9 8 33 33 H 1.09000 * 109.47167 * 59.99332 * 14 13 12 34 34 H 1.08994 * 109.47215 * 179.97438 * 14 13 12 35 35 H 1.09010 * 109.46969 * 299.99597 * 14 13 12 36 36 H 1.09003 * 109.46952 * 60.00322 * 15 13 12 37 37 H 1.08994 * 109.47398 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.47117 * 300.00700 * 15 13 12 39 39 H 0.96997 * 119.99720 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6036 -2.9997 -1.3480 9 16 1.4895 -4.6091 -1.7211 10 8 1.1592 -4.6258 -3.1031 11 8 2.7105 -5.1648 -1.2528 12 6 0.0953 -5.2066 -0.7263 13 6 -0.1133 -6.7000 -0.9855 14 6 -0.4129 -6.9230 -2.4693 15 6 1.1536 -7.4663 -0.6003 16 6 -1.2719 -7.1962 -0.1595 17 1 -1.8059 -6.5147 0.4862 18 6 -1.6497 -8.5205 -0.2273 19 7 -0.9992 -9.3505 -1.0132 20 14 -3.0855 -9.1358 0.7972 21 1 -4.3436 -8.9949 0.0210 22 1 -2.8727 -10.5650 1.1397 23 1 -3.1816 -8.3367 2.0451 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5133 27 1 4.5339 -1.1535 0.0156 28 1 2.7948 -3.1888 0.3679 29 1 1.1021 -2.7284 0.6704 30 1 1.4351 -2.3306 -2.0298 31 1 0.3088 -5.0481 0.3308 32 1 -0.8072 -4.6603 -1.0005 33 1 0.4248 -6.5639 -3.0670 34 1 -0.5611 -7.9869 -2.6540 35 1 -1.3156 -6.3770 -2.7438 36 1 1.3671 -7.3074 0.4568 37 1 1.0052 -8.5301 -0.7854 38 1 1.9913 -7.1072 -1.1981 39 1 -1.2647 -10.2822 -1.0605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601426708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:14 Heat of formation + Delta-G solvation = -17.050872 kcal Electronic energy + Delta-G solvation = -23276.718883 eV Core-core repulsion = 19736.093825 eV Total energy + Delta-G solvation = -3540.625058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.113 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -45.18210 -36.78709 -36.40627 -36.31052 -35.36213 -34.10041 -31.85161 -31.69930 -28.93896 -26.73830 -26.51348 -25.75281 -25.25612 -21.91268 -21.57940 -19.68695 -18.84757 -17.89869 -17.81121 -17.22162 -16.25014 -15.91871 -15.51257 -15.03991 -14.79265 -14.57830 -13.96652 -13.59985 -13.33417 -13.21146 -13.00722 -12.90337 -12.69249 -12.54806 -12.13920 -11.87021 -11.51137 -11.33290 -11.14996 -11.10146 -10.97839 -10.74969 -10.43027 -10.31749 -10.17069 -10.13486 -9.82593 -9.69771 -9.66765 -9.35364 -8.71994 -8.43422 -6.06834 -4.19026 0.73880 1.25356 1.90615 2.99469 3.21950 3.23362 3.31040 3.32510 3.89533 4.22465 4.28232 4.35001 4.53788 4.74395 4.75162 5.13005 5.18626 5.20700 5.27201 5.43980 5.50151 5.56194 5.59933 5.63890 5.85337 5.89559 6.32572 6.66022 6.75678 6.86356 6.95642 7.03913 7.27748 7.46541 7.64492 7.94688 8.01459 8.05843 8.29185 8.79471 9.46670 10.94464 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.003869 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.583516 B = 7235.643472 C = 7809.128586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.030 3.970 3 N -0.368 5.368 4 O 0.096 5.904 5 C -0.036 4.036 6 C -0.211 4.211 7 C 0.195 3.805 8 N -1.128 6.128 9 S 2.593 3.407 10 O -0.962 6.962 11 O -0.963 6.963 12 C -0.581 4.581 13 C 0.082 3.918 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.503 4.503 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.221 0.779 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.413 0.587 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.027 0.973 34 H 0.095 0.905 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.095 0.905 38 H 0.028 0.972 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 15.116 2.829 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 N -0.075 5.075 4 O 0.033 5.967 5 C -0.119 4.119 6 C -0.217 4.217 7 C 0.068 3.932 8 N -0.885 5.885 9 S 2.691 3.309 10 O -0.952 6.952 11 O -0.953 6.953 12 C -0.715 4.715 13 C 0.079 3.921 14 C -0.222 4.222 15 C -0.221 4.221 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.237 0.763 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.245 0.755 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.046 0.954 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.047 0.953 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.883 15.670 2.305 16.896 hybrid contribution -1.400 -0.765 0.761 1.768 sum 4.483 14.905 3.066 15.864 Atomic orbital electron populations 1.20240 0.85707 1.04066 1.03816 1.23586 0.99187 0.88233 1.02001 1.73865 0.89421 1.24151 1.20043 1.84834 1.21602 1.22987 1.67266 1.25990 1.00960 0.83518 1.01402 1.21251 0.92600 0.97204 1.10602 1.19392 1.01243 0.88670 0.83905 1.55966 1.87646 1.27110 1.17792 1.05663 0.77543 0.71940 0.75721 1.93563 1.85952 1.84711 1.31023 1.93537 1.42738 1.76318 1.82727 1.30527 1.16584 1.11031 1.13365 1.17937 0.96116 0.83349 0.94662 1.22279 0.98844 1.05493 0.95544 1.22274 0.94995 1.05657 0.99210 1.20930 1.13893 0.94414 1.24950 0.92299 1.24939 0.96653 0.96750 0.95376 1.69801 1.40010 1.04579 1.37724 0.86537 0.82535 0.78096 0.80469 1.20653 1.21130 1.19959 0.89831 0.89547 0.90456 0.76263 0.88752 0.90228 0.75468 0.86405 0.86157 0.95396 0.88639 0.94458 0.94453 0.88660 0.95311 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.01 0.37 -0.29 16 2 C 0.03 0.31 7.33 -82.10 -0.60 -0.29 16 3 N -0.37 -4.36 12.07 33.42 0.40 -3.96 16 4 O 0.10 1.00 11.20 17.17 0.19 1.20 16 5 C -0.04 -0.31 12.26 29.74 0.36 0.06 16 6 C -0.21 -2.09 5.72 -104.42 -0.60 -2.69 16 7 C 0.19 2.01 6.62 -5.19 -0.03 1.97 16 8 N -1.13 -13.89 5.88 -11.65 -0.07 -13.96 16 9 S 2.59 44.47 4.49 -107.50 -0.48 43.99 16 10 O -0.96 -19.30 15.70 -57.54 -0.90 -20.20 16 11 O -0.96 -18.75 15.11 -57.54 -0.87 -19.62 16 12 C -0.58 -10.50 5.01 37.16 0.19 -10.32 16 13 C 0.08 1.90 0.52 -155.66 -0.08 1.82 16 14 C -0.16 -3.92 7.77 37.16 0.29 -3.64 16 15 C -0.16 -3.87 7.78 37.16 0.29 -3.59 16 16 C -0.50 -12.76 8.01 -34.44 -0.28 -13.04 16 17 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.68 5.15 -17.82 -0.09 1.59 16 19 N -0.88 -23.62 9.35 55.43 0.52 -23.10 16 20 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.62 7.98 -51.93 -0.41 0.21 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.22 1.07 8.06 -52.48 -0.42 0.65 16 28 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 29 H 0.08 0.69 7.98 -51.93 -0.41 0.28 16 30 H 0.41 4.57 8.61 -34.47 -0.30 4.27 16 31 H 0.12 1.86 8.14 -51.92 -0.42 1.44 16 32 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 33 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 34 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 35 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 38 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 39 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 329.51 15.07 4.97 4.97 Total: -1.00 -32.35 329.51 -6.67 -39.02 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.22 Total: 4.92 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: -0.18 Total: -28.41 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.85 Total: -41.02 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.58 Total: -38.63 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 44.47 SS G_CDS: -0.48 Total: 43.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.35 -6.67 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.970 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds