Wall clock time and date at job start Tue Mar 31 2020 07:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47158 * 259.97571 * 7 6 5 9 9 S 1.65599 * 120.00129 * 165.00082 * 8 7 6 10 10 O 1.42098 * 104.27632 * 181.06974 * 9 8 7 11 11 O 1.42093 * 104.27561 * 308.92935 * 9 8 7 12 12 C 1.81397 * 104.44798 * 64.99924 * 9 8 7 13 13 C 1.53002 * 109.47285 * 180.02562 * 12 9 8 14 14 C 1.53004 * 109.47026 * 300.00271 * 13 12 9 15 15 C 1.52999 * 109.47128 * 59.99578 * 13 12 9 16 16 C 1.50693 * 109.47343 * 180.02562 * 13 12 9 17 17 H 1.08002 * 120.00270 * 359.97438 * 16 13 12 18 18 C 1.37883 * 120.00006 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99896 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 120.00054 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46972 * 90.00328 * 20 18 16 22 22 H 1.48498 * 109.47425 * 209.99725 * 20 18 16 23 23 H 1.48494 * 109.47225 * 330.00320 * 20 18 16 24 24 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 25 25 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 26 26 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 27 27 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 28 28 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 29 29 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 30 30 H 0.97005 * 119.99571 * 345.00176 * 8 7 6 31 31 H 1.09000 * 109.47741 * 300.00080 * 12 9 8 32 32 H 1.09000 * 109.47164 * 60.00254 * 12 9 8 33 33 H 1.09000 * 109.47167 * 59.99332 * 14 13 12 34 34 H 1.08994 * 109.47215 * 179.97438 * 14 13 12 35 35 H 1.09010 * 109.46969 * 299.99597 * 14 13 12 36 36 H 1.09003 * 109.46952 * 60.00322 * 15 13 12 37 37 H 1.08994 * 109.47398 * 180.02562 * 15 13 12 38 38 H 1.09000 * 109.47117 * 300.00700 * 15 13 12 39 39 H 0.96997 * 119.99720 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6036 -2.9997 -1.3480 9 16 1.4895 -4.6091 -1.7211 10 8 1.1592 -4.6258 -3.1031 11 8 2.7105 -5.1648 -1.2528 12 6 0.0953 -5.2066 -0.7263 13 6 -0.1133 -6.7000 -0.9855 14 6 -0.4129 -6.9230 -2.4693 15 6 1.1536 -7.4663 -0.6003 16 6 -1.2719 -7.1962 -0.1595 17 1 -1.8059 -6.5147 0.4862 18 6 -1.6497 -8.5205 -0.2273 19 7 -0.9992 -9.3505 -1.0132 20 14 -3.0855 -9.1358 0.7972 21 1 -4.3436 -8.9949 0.0210 22 1 -2.8727 -10.5650 1.1397 23 1 -3.1816 -8.3367 2.0451 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5133 27 1 4.5339 -1.1535 0.0156 28 1 2.7948 -3.1888 0.3679 29 1 1.1021 -2.7284 0.6704 30 1 1.4351 -2.3306 -2.0298 31 1 0.3088 -5.0481 0.3308 32 1 -0.8072 -4.6603 -1.0005 33 1 0.4248 -6.5639 -3.0670 34 1 -0.5611 -7.9869 -2.6540 35 1 -1.3156 -6.3770 -2.7438 36 1 1.3671 -7.3074 0.4568 37 1 1.0052 -8.5301 -0.7854 38 1 1.9913 -7.1072 -1.1981 39 1 -1.2647 -10.2822 -1.0605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601426708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:11 Heat of formation + Delta-G solvation = -39.833438 kcal Electronic energy + Delta-G solvation = -23277.706809 eV Core-core repulsion = 19736.093825 eV Total energy + Delta-G solvation = -3541.612984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 302.113 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -45.93505 -38.12571 -38.07788 -37.37503 -36.83563 -34.92637 -33.59565 -32.63816 -29.61369 -28.27876 -27.64509 -27.41918 -27.17238 -22.70270 -22.27665 -21.35569 -20.21913 -18.92136 -18.60183 -18.35889 -17.79925 -17.26727 -16.89124 -16.58830 -15.96348 -15.72518 -15.06511 -14.64801 -14.62452 -14.38108 -14.26749 -14.06020 -13.81784 -13.67884 -13.39497 -13.24679 -12.98746 -12.86754 -12.80253 -12.71851 -12.45192 -12.14746 -12.12893 -12.07742 -11.90485 -11.51790 -11.35544 -10.88233 -10.68893 -10.50255 -10.38485 -10.32240 -8.00052 -6.18200 -0.59950 0.53690 1.13375 1.46055 1.48635 1.56389 2.04343 2.35527 2.46724 2.89435 3.20645 3.22790 3.37383 3.59537 3.84460 4.01807 4.07627 4.23795 4.43306 4.58946 4.64944 4.66951 4.76211 4.81196 4.88876 4.91407 4.93887 4.95490 5.04819 5.13557 5.25236 5.43987 5.55334 5.68578 6.02245 6.06351 6.16319 6.37901 6.87273 7.30048 7.50271 8.99584 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.003869 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.583516 B = 7235.643472 C = 7809.128586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.025 3.975 3 N -0.399 5.399 4 O 0.087 5.913 5 C -0.021 4.021 6 C -0.226 4.226 7 C 0.187 3.813 8 N -1.112 6.112 9 S 2.616 3.384 10 O -0.994 6.994 11 O -0.987 6.987 12 C -0.586 4.586 13 C 0.068 3.932 14 C -0.161 4.161 15 C -0.160 4.160 16 C -0.514 4.514 17 H 0.066 0.934 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.952 3.048 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.089 0.911 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.255 0.745 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.421 0.579 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 16.414 3.959 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 N -0.108 5.108 4 O 0.026 5.974 5 C -0.104 4.104 6 C -0.232 4.232 7 C 0.062 3.938 8 N -0.872 5.872 9 S 2.714 3.286 10 O -0.985 6.985 11 O -0.977 6.977 12 C -0.718 4.718 13 C 0.066 3.934 14 C -0.219 4.219 15 C -0.218 4.218 16 C -0.553 4.553 17 H 0.084 0.916 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.778 3.222 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.271 0.729 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.256 0.744 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.750 16.975 3.439 18.249 hybrid contribution -1.304 -1.110 0.414 1.762 sum 4.446 15.864 3.852 16.920 Atomic orbital electron populations 1.20372 0.84512 1.04873 1.04459 1.23989 1.00174 0.88219 1.01098 1.73871 0.90027 1.25161 1.21741 1.84809 1.21230 1.23939 1.67388 1.26675 1.01999 0.82830 0.98851 1.21234 0.93036 0.96763 1.12133 1.19651 1.02558 0.88956 0.82674 1.55486 1.87290 1.25228 1.19221 1.04671 0.76625 0.72763 0.74558 1.93514 1.86201 1.85708 1.33037 1.93503 1.43612 1.77690 1.82892 1.30455 1.18305 1.07634 1.15433 1.17929 0.95185 0.86751 0.93567 1.22218 0.99174 1.03747 0.96735 1.22201 0.95720 1.04126 0.99714 1.21313 1.14436 0.94598 1.24964 0.91630 1.25662 0.98835 0.97267 0.96442 1.69951 1.41253 1.04577 1.38956 0.85650 0.79799 0.77319 0.79394 1.20616 1.21543 1.18980 0.89207 0.88286 0.90153 0.72926 0.88108 0.88130 0.74419 0.83892 0.84229 0.94921 0.91274 0.94182 0.93779 0.91384 0.94743 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.39 71.24 0.74 -0.48 16 2 C 0.02 0.47 7.33 43.58 0.32 0.79 16 3 N -0.40 -8.92 12.07 -49.55 -0.60 -9.52 16 4 O 0.09 1.67 11.20 71.60 0.80 2.47 16 5 C -0.02 -0.30 12.26 67.17 0.82 0.52 16 6 C -0.23 -3.86 5.72 -19.74 -0.11 -3.97 16 7 C 0.19 3.24 6.62 85.63 0.57 3.81 16 8 N -1.11 -24.27 5.88 -190.77 -1.12 -25.39 16 9 S 2.62 84.59 4.49 -56.49 -0.25 84.34 16 10 O -0.99 -38.68 15.70 -127.65 -2.00 -40.68 16 11 O -0.99 -36.70 15.11 -127.65 -1.93 -38.63 16 12 C -0.59 -19.73 5.01 71.98 0.36 -19.37 16 13 C 0.07 3.09 0.52 -52.93 -0.03 3.06 16 14 C -0.16 -7.71 7.77 71.98 0.56 -7.15 16 15 C -0.16 -7.52 7.78 71.98 0.56 -6.96 16 16 C -0.51 -25.52 8.01 25.60 0.21 -25.31 16 17 H 0.07 3.09 7.74 -2.91 -0.02 3.07 16 18 C 0.02 0.89 5.15 84.66 0.44 1.32 16 19 N -0.91 -49.25 9.35 21.45 0.20 -49.05 16 20 Si 0.95 40.96 29.54 68.60 2.03 42.98 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.10 1.14 7.98 -2.39 -0.02 1.12 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.25 1.55 8.06 -2.91 -0.02 1.53 16 28 H 0.10 1.66 7.69 -2.39 -0.02 1.64 16 29 H 0.10 1.35 7.98 -2.38 -0.02 1.33 16 30 H 0.42 8.21 8.61 -96.74 -0.83 7.38 16 31 H 0.14 4.03 8.14 -2.39 -0.02 4.01 16 32 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 33 H 0.03 1.49 5.46 -2.39 -0.01 1.48 16 34 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 35 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 38 H 0.03 1.54 5.46 -2.39 -0.01 1.52 16 39 H 0.26 13.58 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -69.14 329.51 1.80 -67.35 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.24 Total: 19.86 kcal Atomic # 6 Polarization: -58.17 SS G_CDS: 4.43 Total: -53.74 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -1.52 Total: -83.96 kcal Atomic # 8 Polarization: -73.71 SS G_CDS: -3.13 Total: -76.84 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 84.59 SS G_CDS: -0.25 Total: 84.34 kcal Total: -69.14 1.80 -67.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.515 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds