Wall clock time and date at job start Tue Mar 31 2020 07:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35830 * 116.99802 * 2 1 4 4 C 1.38895 * 119.90925 * 180.02562 * 3 2 1 5 5 C 1.37822 * 120.08556 * 179.97438 * 4 3 2 6 6 C 1.39633 * 119.90944 * 0.02562 * 5 4 3 7 7 C 1.47774 * 120.08380 * 180.02562 * 6 5 4 8 8 C 1.36776 * 126.82058 * 179.97438 * 7 6 5 9 9 C 1.41874 * 103.81322 * 179.97438 * 8 7 6 10 10 C 1.48343 * 126.83591 * 179.97438 * 9 8 7 11 11 O 1.21494 * 120.00362 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99875 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72911 * 12 10 9 14 14 C 1.50698 * 109.47082 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99736 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00453 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99720 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46927 * 89.99576 * 18 16 14 20 20 H 1.48494 * 109.46891 * 209.99448 * 18 16 14 21 21 H 1.48498 * 109.47123 * 329.99502 * 18 16 14 22 22 N 1.31098 * 106.32235 * 0.26476 * 9 8 7 23 23 O 1.20884 * 111.77648 * 359.53409 * 22 9 8 24 24 C 1.39627 * 119.82853 * 0.27062 * 6 5 4 25 25 C 1.37817 * 119.90783 * 359.44972 * 24 6 5 26 26 H 1.08997 * 109.47280 * 299.99809 * 1 2 3 27 27 H 1.09004 * 109.46979 * 60.00323 * 1 2 3 28 28 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.96217 * 359.95021 * 4 3 2 30 30 H 1.07997 * 120.04388 * 180.02562 * 5 4 3 31 31 H 1.07998 * 128.09165 * 359.97438 * 8 7 6 32 32 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 33 33 H 1.09007 * 109.47196 * 299.99538 * 13 12 10 34 34 H 1.09006 * 109.47678 * 59.99732 * 13 12 10 35 35 H 0.96993 * 120.00028 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.04521 * 179.70358 * 24 6 5 37 37 H 1.08004 * 119.95514 * 180.25180 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 3.4328 1.2808 -0.0005 5 6 4.0622 2.5069 -0.0011 6 6 3.3035 3.6791 -0.0005 7 6 3.9743 4.9958 -0.0017 8 6 3.3709 6.2232 -0.0018 9 6 4.4578 7.1350 -0.0025 10 6 4.3761 8.6162 -0.0034 11 8 3.2922 9.1649 -0.0032 12 7 5.5045 9.3534 -0.0044 13 6 5.4239 10.8160 -0.0114 14 6 6.8149 11.3958 -0.0118 15 1 7.6731 10.7402 -0.0069 16 6 6.9919 12.7632 -0.0173 17 7 5.9467 13.5615 -0.0227 18 14 8.7161 13.4819 -0.0171 19 1 9.1757 13.6662 -1.4171 20 1 8.7052 14.7945 0.6772 21 1 9.6381 12.5562 0.6888 22 7 5.5487 6.4079 -0.0084 23 8 5.2993 5.2251 -0.0023 24 6 1.9092 3.6039 0.0063 25 6 1.2874 2.3740 0.0009 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.0190 0.3738 -0.0001 30 1 5.1408 2.5610 -0.0019 31 1 2.3142 6.4461 -0.0015 32 1 6.3700 8.9152 -0.0050 33 1 4.8927 11.1465 -0.9041 34 1 4.8889 11.1547 0.8759 35 1 6.0712 14.5234 -0.0270 36 1 1.3189 4.5083 0.0115 37 1 0.2089 2.3150 0.0021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156059310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:22 Heat of formation + Delta-G solvation = 10.125366 kcal Electronic energy + Delta-G solvation = -22434.411456 eV Core-core repulsion = 18759.520897 eV Total energy + Delta-G solvation = -3674.890559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.95111 -40.52688 -38.78906 -37.99170 -34.36082 -33.94849 -32.96696 -32.24493 -31.56945 -29.51049 -27.68089 -27.57640 -24.68659 -23.82148 -22.91184 -22.23675 -21.71792 -19.66140 -18.79153 -18.18549 -17.72882 -16.90606 -16.50321 -16.20670 -16.01917 -15.38614 -15.15559 -14.66313 -14.42556 -14.39233 -14.25357 -13.80905 -13.64029 -13.27983 -13.00658 -12.50907 -12.39500 -12.01677 -11.98064 -11.80910 -11.53270 -11.24716 -11.00297 -10.91325 -10.36218 -10.31472 -10.03463 -9.56123 -9.48804 -9.42738 -8.78321 -8.24078 -8.01097 -6.19011 -4.26046 0.38796 0.91341 1.47053 1.98007 2.75459 2.82534 3.24692 3.30483 3.33467 3.38942 3.62304 3.69444 4.14451 4.30210 4.33713 4.42687 4.55920 4.67586 4.68198 4.80941 4.95262 5.00859 5.04525 5.13809 5.17376 5.30615 5.49073 5.57225 5.78565 5.85849 5.92721 6.05941 6.21371 6.88228 7.19216 7.25969 7.43354 7.60697 7.90847 8.05502 8.49887 8.67545 8.91424 9.40008 10.91190 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.048409 B = 0.002218 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.267029 B =12623.562500 C =13181.369649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.139 3.861 4 C -0.150 4.150 5 C -0.053 4.053 6 C -0.055 4.055 7 C 0.005 3.995 8 C -0.170 4.170 9 C -0.009 4.009 10 C 0.577 3.423 11 O -0.538 6.538 12 N -0.690 5.690 13 C 0.248 3.752 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.906 3.094 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.331 5.331 23 O 0.123 5.877 24 C -0.047 4.047 25 C -0.206 4.206 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.181 0.819 32 H 0.398 0.602 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.267 0.733 36 H 0.136 0.864 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 -28.002 0.060 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.093 3.907 4 C -0.168 4.168 5 C -0.072 4.072 6 C -0.057 4.057 7 C -0.058 4.058 8 C -0.192 4.192 9 C -0.168 4.168 10 C 0.359 3.641 11 O -0.415 6.415 12 N -0.338 5.338 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.197 1.197 22 N -0.031 5.031 23 O 0.047 5.953 24 C -0.066 4.066 25 C -0.225 4.225 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.156 0.844 30 H 0.159 0.841 31 H 0.198 0.802 32 H 0.232 0.768 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.004 -27.149 0.058 28.604 hybrid contribution 0.194 0.488 -0.008 0.525 sum -8.810 -26.662 0.050 28.080 Atomic orbital electron populations 1.23123 0.77996 1.04230 1.01679 1.86071 1.21735 1.26841 1.88186 1.19234 0.92435 0.84252 0.94807 1.20364 0.91281 0.98654 1.06537 1.21128 1.00501 0.90314 0.95214 1.17466 0.92430 0.87927 1.07852 1.22327 0.83382 0.95026 1.05090 1.22576 1.01565 0.89155 1.05949 1.23786 0.89373 0.97843 1.05822 1.16970 0.85645 0.82608 0.78875 1.90758 1.27918 1.71215 1.51567 1.46443 1.07092 1.10303 1.69958 1.19262 0.98013 0.71765 0.98194 1.21208 0.91535 0.92104 1.53468 0.91717 1.24950 0.97709 0.96746 0.94562 1.69971 1.29454 1.04063 1.48755 0.86369 0.83522 0.78504 0.78280 1.20400 1.20948 1.19675 1.74162 1.23453 0.88948 1.16584 1.84849 1.23682 1.20192 1.66531 1.20935 0.92454 0.97963 0.95259 1.21147 1.00425 0.91707 1.09207 0.92336 0.92341 0.88052 0.84424 0.84078 0.80190 0.76827 0.94983 0.94941 0.92373 0.84642 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.32 -2.38 10.49 -19.21 -0.20 -2.58 16 3 C 0.14 1.12 6.69 -39.09 -0.26 0.86 16 4 C -0.15 -1.18 9.97 -39.49 -0.39 -1.57 16 5 C -0.05 -0.45 9.72 -39.21 -0.38 -0.83 16 6 C -0.06 -0.54 5.87 -104.96 -0.62 -1.16 16 7 C 0.00 0.06 7.15 -36.21 -0.26 -0.20 16 8 C -0.17 -2.42 10.33 -38.72 -0.40 -2.82 16 9 C -0.01 -0.17 7.18 -82.63 -0.59 -0.76 16 10 C 0.58 12.56 7.85 -12.10 -0.09 12.47 16 11 O -0.54 -13.17 16.95 5.37 0.09 -13.08 16 12 N -0.69 -15.74 5.55 -62.27 -0.35 -16.08 16 13 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 14 C -0.54 -15.11 9.28 -34.44 -0.32 -15.43 16 15 H 0.06 1.70 7.60 -52.48 -0.40 1.30 16 16 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 18 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 N -0.33 -5.49 11.81 33.35 0.39 -5.10 16 23 O 0.12 1.71 11.01 16.04 0.18 1.89 16 24 C -0.05 -0.40 9.57 -39.22 -0.38 -0.77 16 25 C -0.21 -1.51 9.02 -39.49 -0.36 -1.87 16 26 H 0.06 0.18 7.65 -51.93 -0.40 -0.21 16 27 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.14 1.00 7.95 -52.49 -0.42 0.58 16 31 H 0.18 2.18 7.46 -52.49 -0.39 1.79 16 32 H 0.40 8.32 8.08 -40.82 -0.33 7.99 16 33 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.14 0.95 7.14 -52.49 -0.37 0.58 16 37 H 0.14 0.68 6.28 -52.48 -0.33 0.35 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -33.11 333.88 -6.19 -39.30 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.86 Total: 2.51 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.19 Total: -2.63 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.79 Total: -46.56 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.07 Total: -13.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.11 -6.19 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156059310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.423 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds