Wall clock time and date at job start Tue Mar 31 2020 07:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36034 * 116.99807 * 2 1 4 4 C 1.38547 * 120.05155 * 0.02739 * 3 2 1 5 5 C 1.38243 * 120.02498 * 179.97438 * 4 3 2 6 6 C 1.38447 * 120.11858 * 0.02562 * 5 4 3 7 7 F 1.35103 * 119.94846 * 180.27210 * 6 5 4 8 8 C 1.38423 * 120.10033 * 359.97438 * 6 5 4 9 9 C 1.38563 * 119.97182 * 0.02562 * 8 6 5 10 10 O 1.35994 * 120.05544 * 179.97438 * 9 8 6 11 11 C 1.42896 * 117.00463 * 354.59412 * 10 9 8 12 12 H 1.09009 * 109.47013 * 324.15903 * 11 10 9 13 13 C 1.50698 * 109.47397 * 84.15574 * 11 10 9 14 14 H 1.07997 * 120.00241 * 239.99951 * 13 11 10 15 15 C 1.37884 * 119.99575 * 60.00562 * 13 11 10 16 16 N 1.31517 * 119.99909 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99751 * 179.97438 * 15 13 11 18 18 H 1.48510 * 109.46964 * 90.00000 * 17 15 13 19 19 H 1.48497 * 109.46937 * 209.99742 * 17 15 13 20 20 H 1.48494 * 109.47562 * 330.00023 * 17 15 13 21 21 C 1.50697 * 109.47342 * 204.16459 * 11 10 9 22 22 C 1.38242 * 119.99922 * 324.72060 * 21 11 10 23 23 C 1.38235 * 120.00099 * 179.81279 * 22 21 11 24 24 C 1.38236 * 119.99659 * 0.39857 * 23 22 21 25 25 C 1.38231 * 120.00234 * 359.85830 * 24 23 22 26 26 C 1.38233 * 120.00213 * 359.95045 * 25 24 23 27 27 H 1.09000 * 109.47353 * 60.00016 * 1 2 3 28 28 H 1.09002 * 109.46836 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47276 * 299.99276 * 1 2 3 30 30 H 1.08000 * 119.98506 * 359.96938 * 4 3 2 31 31 H 1.08003 * 119.93590 * 179.97438 * 5 4 3 32 32 H 1.07994 * 120.01218 * 179.97438 * 8 6 5 33 33 H 0.96998 * 119.99265 * 180.02562 * 16 15 13 34 34 H 1.07997 * 119.99554 * 0.02562 * 22 21 11 35 35 H 1.08000 * 119.99938 * 180.23040 * 23 22 21 36 36 H 1.08005 * 119.99517 * 179.83433 * 24 23 22 37 37 H 1.08000 * 120.00155 * 179.97438 * 25 24 23 38 38 H 1.08004 * 120.00040 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2930 2.3747 0.0006 5 6 1.9211 3.6062 0.0011 6 6 3.3036 3.6809 0.0005 7 9 3.9139 4.8862 0.0066 8 6 4.0614 2.5226 0.0000 9 6 3.4359 1.2861 -0.0006 10 8 4.1788 0.1470 -0.0017 11 6 5.5949 0.2960 -0.1221 12 1 5.8171 1.1309 -0.7869 13 6 6.1893 0.5639 1.2365 14 1 6.7349 1.4783 1.4165 15 6 6.0365 -0.3586 2.2498 16 7 5.3716 -1.4720 2.0307 17 14 6.7738 -0.0270 3.9337 18 1 5.7832 0.6914 4.7752 19 1 7.1307 -1.3153 4.5803 20 1 7.9936 0.8067 3.7846 21 6 6.1867 -0.9687 -0.6890 22 6 5.6472 -2.1959 -0.3516 23 6 6.1876 -3.3558 -0.8746 24 6 7.2726 -3.2890 -1.7285 25 6 7.8154 -2.0621 -2.0617 26 6 7.2725 -0.9020 -1.5418 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.2144 2.3188 0.0005 31 1 1.3323 4.5116 0.0011 32 1 5.1397 2.5825 -0.0009 33 1 5.2639 -2.1208 2.7437 34 1 4.8014 -2.2483 0.3179 35 1 5.7637 -4.3144 -0.6139 36 1 7.6965 -4.1954 -2.1350 37 1 8.6633 -2.0099 -2.7285 38 1 7.6964 0.0566 -1.8025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225649708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:21 Heat of formation + Delta-G solvation = -56.344251 kcal Electronic energy + Delta-G solvation = -24600.222658 eV Core-core repulsion = 20902.529799 eV Total energy + Delta-G solvation = -3697.692860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.38033 -39.83951 -38.44691 -37.33049 -35.91353 -33.11150 -30.77639 -29.86955 -29.59716 -29.00178 -27.00431 -26.75038 -23.54122 -21.98721 -21.82483 -21.31998 -20.10058 -18.16803 -17.25720 -16.75299 -16.41130 -15.69745 -15.55312 -15.22436 -14.94830 -14.84982 -14.28028 -14.16348 -13.85174 -13.62731 -13.44308 -13.28071 -12.50714 -12.47969 -12.22462 -12.15512 -11.59627 -11.51147 -11.35113 -11.21412 -11.00068 -10.67875 -10.61933 -10.49160 -10.40156 -10.09634 -9.44279 -9.29851 -8.85439 -8.15620 -7.85173 -7.55918 -7.04423 -6.09742 -4.46228 1.66821 1.86717 2.39343 2.56457 3.19659 3.26640 3.29267 3.71412 4.12707 4.22782 4.26233 4.77463 4.95315 5.08858 5.15788 5.29502 5.38316 5.42928 5.65920 5.72104 5.77270 5.80991 5.88907 6.02257 6.13757 6.25844 6.38246 6.48941 6.57324 6.63516 6.79212 6.83821 7.01848 7.18973 7.25877 7.43663 7.52991 7.67173 7.75951 7.85521 7.97704 8.22240 8.43285 8.77957 9.30734 10.73302 Molecular weight = 302.11amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.005986 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.745414 B = 4676.760379 C = 5230.919906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.297 6.297 3 C 0.067 3.933 4 C -0.153 4.153 5 C -0.183 4.183 6 C 0.098 3.902 7 F -0.148 7.148 8 C -0.213 4.213 9 C 0.182 3.818 10 O -0.275 6.275 11 C 0.236 3.764 12 H 0.035 0.965 13 C -0.548 4.548 14 H 0.068 0.932 15 C 0.085 3.915 16 N -0.841 5.841 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 C -0.044 4.044 22 C -0.044 4.044 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.125 4.125 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.152 0.848 33 H 0.266 0.734 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 2.337 -4.720 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.210 6.210 3 C 0.021 3.979 4 C -0.172 4.172 5 C -0.202 4.202 6 C 0.079 3.921 7 F -0.126 7.126 8 C -0.233 4.233 9 C 0.132 3.868 10 O -0.186 6.186 11 C 0.183 3.817 12 H 0.053 0.947 13 C -0.584 4.584 14 H 0.086 0.914 15 C -0.122 4.122 16 N -0.475 5.475 17 Si 0.723 3.277 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.045 4.045 22 C -0.063 4.063 23 C -0.170 4.170 24 C -0.161 4.161 25 C -0.167 4.167 26 C -0.143 4.143 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.077 0.923 34 H 0.183 0.817 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.478 1.790 -4.607 8.148 hybrid contribution 0.621 0.609 1.137 1.431 sum -5.857 2.399 -3.470 7.218 Atomic orbital electron populations 1.22968 0.79872 1.03392 1.00495 1.86272 1.19784 1.25728 1.89236 1.18363 0.89696 0.84940 1.04866 1.20667 0.99386 0.90866 1.06234 1.20494 0.92377 0.98075 1.09258 1.17338 0.90534 0.79962 1.04304 1.91434 1.83765 1.43174 1.94259 1.21142 1.01888 0.90100 1.10125 1.18056 0.88084 0.87214 0.93495 1.86409 1.22024 1.26098 1.84106 1.19060 0.75896 0.91279 0.95508 0.94713 1.21371 1.36808 1.05605 0.94599 0.91365 1.25021 0.93793 0.94200 0.99200 1.69816 1.37765 1.08002 1.31960 0.86526 0.79657 0.78005 0.83555 1.20244 1.20826 1.19604 1.19738 0.95410 0.95750 0.93596 1.21898 1.00930 0.90177 0.93283 1.21153 0.97963 0.98485 0.99419 1.20855 0.98065 0.96624 1.00513 1.20698 1.00732 0.92853 1.02408 1.20748 0.97433 0.97514 0.98605 0.93332 0.88708 0.93254 0.84960 0.85549 0.83038 0.92330 0.81731 0.87855 0.88121 0.87806 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.30 -5.56 10.28 -34.39 -0.35 -5.91 16 3 C 0.07 1.28 6.70 -39.13 -0.26 1.02 16 4 C -0.15 -2.40 9.04 -39.47 -0.36 -2.76 16 5 C -0.18 -2.90 10.02 -39.50 -0.40 -3.29 16 6 C 0.10 1.78 7.30 -39.44 -0.29 1.50 16 7 F -0.15 -2.63 17.26 2.25 0.04 -2.59 16 8 C -0.21 -4.32 8.67 -39.39 -0.34 -4.66 16 9 C 0.18 3.95 6.60 -39.13 -0.26 3.69 16 10 O -0.28 -6.70 8.13 -34.26 -0.28 -6.98 16 11 C 0.24 5.65 2.11 -29.04 -0.06 5.59 16 12 H 0.04 0.79 6.27 -51.92 -0.33 0.46 16 13 C -0.55 -14.02 7.92 -34.44 -0.27 -14.30 16 14 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.09 2.20 5.24 -17.82 -0.09 2.11 16 16 N -0.84 -21.95 8.51 55.43 0.47 -21.48 16 17 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.04 -1.04 4.80 -104.62 -0.50 -1.54 16 22 C -0.04 -1.03 7.46 -39.58 -0.30 -1.33 16 23 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 24 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 25 C -0.15 -2.82 10.05 -39.59 -0.40 -3.22 16 26 C -0.12 -2.61 9.68 -39.58 -0.38 -2.99 16 27 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 30 H 0.13 1.61 6.29 -52.49 -0.33 1.28 16 31 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.15 3.15 5.67 -52.49 -0.30 2.85 16 33 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 34 H 0.17 4.20 5.50 -52.49 -0.29 3.91 16 35 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 36 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -28.05 324.15 -8.09 -36.14 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.12 Total: 5.92 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -3.71 Total: -25.44 kcal Atomic # 7 Polarization: -21.95 SS G_CDS: 0.47 Total: -21.48 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.63 Total: -12.89 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.05 -8.09 -36.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225649708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.203 kcal (2) G-P(sol) polarization free energy of solvation -28.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds