Wall clock time and date at job start Tue Mar 31 2020 07:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35244 * 126.07394 * 2 1 4 4 C 1.40405 * 107.87039 * 180.15285 * 3 2 1 5 5 N 1.40187 * 125.97507 * 179.82813 * 4 3 2 6 6 C 1.34773 * 119.99817 * 359.71877 * 5 4 3 7 7 O 1.21596 * 119.99934 * 359.72209 * 6 5 4 8 8 N 1.34773 * 119.99965 * 179.72584 * 6 5 4 9 9 C 1.39932 * 120.00087 * 174.73828 * 8 6 5 10 10 C 1.38956 * 120.03768 * 326.17324 * 9 8 6 11 11 C 1.38158 * 120.07026 * 179.78985 * 10 9 8 12 12 C 1.38166 * 120.13623 * 0.45953 * 11 10 9 13 13 C 1.38907 * 120.07145 * 359.79563 * 12 11 10 14 14 O 1.35748 * 120.03527 * 179.97438 * 13 12 11 15 15 C 1.34835 * 117.00160 * 185.92235 * 14 13 12 16 16 H 1.08008 * 119.99964 * 5.40383 * 15 14 13 17 17 C 1.38652 * 120.00206 * 185.40359 * 15 14 13 18 18 N 1.31554 * 119.99775 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46967 * 90.00110 * 19 17 15 21 21 H 1.48495 * 109.47280 * 210.00155 * 19 17 15 22 22 H 1.48507 * 109.47377 * 330.00394 * 19 17 15 23 23 C 1.38712 * 120.03196 * 146.44323 * 9 8 6 24 24 N 1.31217 * 108.05096 * 359.56836 * 4 3 2 25 25 N 1.34965 * 126.06997 * 179.67914 * 2 1 3 26 26 H 0.96999 * 125.97776 * 0.03125 * 25 2 1 27 27 H 1.09001 * 109.47448 * 270.34884 * 1 2 3 28 28 H 1.09000 * 109.46769 * 30.34478 * 1 2 3 29 29 H 1.09000 * 109.47367 * 150.34093 * 1 2 3 30 30 H 1.07994 * 126.06620 * 0.02562 * 3 2 1 31 31 H 0.96998 * 119.99212 * 179.44235 * 5 4 3 32 32 H 0.96996 * 119.99851 * 354.73642 * 8 6 5 33 33 H 1.08001 * 119.96270 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.93028 * 180.20876 * 11 10 9 35 35 H 1.08003 * 119.96397 * 179.76645 * 12 11 10 36 36 H 0.96999 * 119.99887 * 179.97438 * 18 17 15 37 37 H 1.07990 * 120.07402 * 359.96241 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 -0.0036 5 7 4.7738 1.4750 -0.0081 6 6 4.6370 2.8157 -0.0152 7 8 3.5277 3.3137 -0.0226 8 7 5.7298 3.6046 -0.0140 9 6 5.5913 4.9920 -0.1323 10 6 4.5688 5.5253 -0.9074 11 6 4.4288 6.8951 -1.0213 12 6 5.3102 7.7387 -0.3730 13 6 6.3377 7.2117 0.3991 14 8 7.2036 8.0413 1.0353 15 6 8.2485 7.4684 1.6663 16 1 8.4160 6.4051 1.5775 17 6 9.1080 8.2443 2.4290 18 7 8.9037 9.5394 2.5375 19 14 10.5552 7.4505 3.3036 20 1 11.7402 7.4600 2.4086 21 1 10.8635 8.2112 4.5411 22 1 10.2125 6.0493 3.6563 23 6 6.4781 5.8363 0.5194 24 7 3.6336 -0.6576 0.0038 25 7 2.3016 -1.0909 0.0061 26 1 2.0026 -2.0137 0.0108 27 1 -0.3634 0.0063 1.0276 28 1 -0.3633 0.8869 -0.5192 29 1 -0.3634 -0.8930 -0.5085 30 1 1.9721 2.1210 0.0004 31 1 5.6586 1.0776 -0.0022 32 1 6.6122 3.2106 0.0690 33 1 3.8804 4.8684 -1.4183 34 1 3.6312 7.3072 -1.6216 35 1 5.2005 8.8090 -0.4669 36 1 9.5048 10.0821 3.0713 37 1 7.2759 5.4243 1.1194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755225765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:27 Heat of formation + Delta-G solvation = 59.739565 kcal Electronic energy + Delta-G solvation = -23087.282206 eV Core-core repulsion = 19446.835831 eV Total energy + Delta-G solvation = -3640.446375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.117 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58252 -40.31900 -38.78188 -36.67488 -34.98223 -34.34299 -32.30674 -32.18173 -30.52057 -29.21467 -28.39244 -27.25433 -25.32249 -23.35854 -21.83859 -21.19456 -20.99059 -20.19621 -18.62359 -17.89223 -17.48827 -17.12816 -16.28173 -15.81014 -15.21037 -15.03217 -14.87041 -14.72482 -14.16645 -13.99435 -13.71137 -13.58040 -13.21145 -13.16273 -12.97670 -12.48157 -12.42986 -11.82734 -11.58925 -11.21332 -11.12959 -10.91501 -10.84531 -10.79943 -10.46181 -10.01986 -9.70599 -9.47479 -8.86216 -8.81158 -8.51868 -7.73607 -7.15483 -6.45069 -4.04786 1.62031 1.93428 2.10639 2.38323 2.61010 2.97878 3.11736 3.12507 3.17184 3.37230 3.95395 4.00340 4.50341 4.60304 4.77029 5.05608 5.09776 5.18682 5.27881 5.44528 5.60484 5.67791 5.73815 5.97700 6.00850 6.10706 6.21005 6.31224 6.45715 6.69219 6.77908 6.98035 7.03052 7.11336 7.20011 7.31912 7.42271 7.52625 7.80521 7.91224 7.99156 8.44689 9.00360 9.70715 10.72999 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.022328 B = 0.002953 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.711172 B = 9480.293126 C =10398.570013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.091 3.909 3 C -0.262 4.262 4 C 0.328 3.672 5 N -0.648 5.648 6 C 0.713 3.287 7 O -0.545 6.545 8 N -0.673 5.673 9 C 0.196 3.804 10 C -0.204 4.204 11 C -0.062 4.062 12 C -0.200 4.200 13 C 0.169 3.831 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.090 0.910 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.255 4.255 24 N -0.330 5.330 25 N -0.473 5.473 26 H 0.438 0.562 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.176 0.824 31 H 0.412 0.588 32 H 0.405 0.595 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.270 0.730 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -18.750 -5.384 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 C -0.293 4.293 4 C 0.071 3.929 5 N -0.300 5.300 6 C 0.413 3.587 7 O -0.418 6.418 8 N -0.320 5.320 9 C 0.103 3.897 10 C -0.225 4.225 11 C -0.081 4.081 12 C -0.220 4.220 13 C 0.115 3.885 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.497 5.497 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.277 4.277 24 N -0.161 5.161 25 N -0.184 5.184 26 H 0.282 0.718 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.193 0.807 31 H 0.247 0.753 32 H 0.241 0.759 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.358 -18.810 -5.246 22.591 hybrid contribution 1.180 -0.765 0.623 1.538 sum -10.178 -19.575 -4.623 22.542 Atomic orbital electron populations 1.20457 0.87012 1.03984 1.03549 1.21160 0.94813 0.87227 1.00568 1.21680 0.89658 1.01009 1.16930 1.18772 0.87393 0.88764 0.97983 1.41633 1.07413 1.04119 1.76820 1.15605 0.85168 0.79889 0.78074 1.90888 1.23425 1.72762 1.54732 1.42472 1.08029 1.05637 1.75860 1.17143 0.97131 0.79334 0.96091 1.20561 1.01796 0.95151 1.04992 1.20520 0.97332 0.92497 0.97725 1.20260 0.98034 0.99823 1.03866 1.19061 0.89692 0.88627 0.91158 1.84024 1.32354 1.32617 1.58910 1.21264 1.02123 0.94373 1.29061 0.89247 1.25272 0.98936 0.95486 0.96787 1.70034 1.37182 1.04566 1.37898 0.85732 0.80162 0.78838 0.78783 1.19900 1.20273 1.19293 1.20777 1.05582 0.93102 1.08217 1.77294 0.97098 1.09436 1.32300 1.45773 1.02776 1.07988 1.61890 0.71752 0.90031 0.89264 0.91135 0.80712 0.75289 0.75945 0.86125 0.86551 0.86354 0.92014 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.43 36.00 0.38 -0.16 16 2 C 0.09 0.90 7.20 -82.28 -0.59 0.31 16 3 C -0.26 -3.50 9.52 -39.83 -0.38 -3.88 16 4 C 0.33 4.47 8.11 -154.36 -1.25 3.22 16 5 N -0.65 -8.09 5.45 -15.51 -0.08 -8.17 16 6 C 0.71 10.83 8.27 -86.92 -0.72 10.11 16 7 O -0.54 -9.83 11.18 5.28 0.06 -9.77 16 8 N -0.67 -9.95 5.35 -14.24 -0.08 -10.02 16 9 C 0.20 3.67 6.27 -83.72 -0.52 3.14 16 10 C -0.20 -3.82 8.65 -39.34 -0.34 -4.16 16 11 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 12 C -0.20 -4.22 9.99 -39.36 -0.39 -4.61 16 13 C 0.17 4.03 6.64 -39.13 -0.26 3.77 16 14 O -0.18 -4.94 9.76 0.04 0.00 -4.94 16 15 C -0.39 -10.73 9.44 30.89 0.29 -10.44 16 16 H 0.09 2.24 5.30 -52.48 -0.28 1.96 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 19 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 20 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.25 -5.40 9.04 -39.20 -0.35 -5.76 16 24 N -0.33 -4.18 12.72 31.44 0.40 -3.78 16 25 N -0.47 -4.53 7.35 33.47 0.25 -4.28 16 26 H 0.44 2.58 8.96 -182.62 -1.64 0.94 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.18 2.61 5.91 -52.49 -0.31 2.30 16 31 H 0.41 3.85 8.84 -40.82 -0.36 3.49 16 32 H 0.41 4.60 8.83 -40.82 -0.36 4.24 16 33 H 0.12 2.20 6.44 -52.49 -0.34 1.86 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.13 2.70 5.71 -52.49 -0.30 2.40 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -34.55 324.29 -8.31 -42.86 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -4.83 Total: 11.36 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -4.64 Total: -9.02 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 1.24 Total: -50.56 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.06 Total: -14.70 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.55 -8.31 -42.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755225765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.601 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds