Wall clock time and date at job start Tue Mar 31 2020 07:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35238 * 126.06807 * 2 1 4 4 C 1.40403 * 107.86579 * 179.84713 * 3 2 1 5 5 N 1.40192 * 125.97411 * 180.16314 * 4 3 2 6 6 C 1.34769 * 119.99883 * 0.27249 * 5 4 3 7 7 O 1.21593 * 120.00293 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00121 * 179.97438 * 6 5 4 9 9 C 1.39565 * 120.00196 * 174.71039 * 8 6 5 10 10 C 1.39645 * 121.08821 * 327.70373 * 9 8 6 11 11 C 1.38306 * 117.89072 * 179.74233 * 10 9 8 12 12 N 1.32063 * 119.92451 * 0.53444 * 11 10 9 13 13 N 1.28307 * 122.37940 * 359.72257 * 12 11 10 14 14 C 1.31805 * 122.25621 * 359.97438 * 13 12 11 15 15 N 1.31206 * 108.05418 * 0.41728 * 4 3 2 16 16 N 1.34965 * 126.06844 * 180.30368 * 2 1 3 17 17 C 1.46497 * 125.97658 * 359.97438 * 16 2 1 18 18 C 1.50708 * 109.47032 * 89.99919 * 17 16 2 19 19 H 1.07992 * 119.99757 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99752 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99776 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47076 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46746 * 120.00490 * 22 20 18 25 25 H 1.48497 * 109.46928 * 239.99923 * 22 20 18 26 26 H 1.09006 * 109.47506 * 269.68948 * 1 2 3 27 27 H 1.09005 * 109.47166 * 149.69544 * 1 2 3 28 28 H 1.08998 * 109.47150 * 29.69435 * 1 2 3 29 29 H 1.08001 * 126.06857 * 359.96562 * 3 2 1 30 30 H 0.96994 * 120.00050 * 180.27155 * 5 4 3 31 31 H 0.97001 * 119.99541 * 354.71366 * 8 6 5 32 32 H 1.08004 * 121.05910 * 359.97438 * 10 9 8 33 33 H 1.07991 * 120.03773 * 180.23558 * 11 10 9 34 34 H 1.08007 * 120.13508 * 180.02562 * 14 13 12 35 35 H 1.09007 * 109.46938 * 209.99512 * 17 16 2 36 36 H 1.08995 * 109.47610 * 329.99930 * 17 16 2 37 37 H 0.97003 * 119.99286 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0036 5 7 4.7737 1.4751 0.0080 6 6 4.6369 2.8158 0.0146 7 8 3.5276 3.3138 0.0173 8 7 5.7297 3.6047 0.0194 9 6 5.5911 4.9895 -0.0852 10 6 4.5501 5.5564 -0.8235 11 6 4.4724 6.9361 -0.8783 12 7 5.3728 7.6721 -0.2525 13 7 6.3338 7.1553 0.4225 14 6 6.4899 5.8518 0.5394 15 7 3.6336 -0.6575 -0.0035 16 7 2.3016 -1.0909 -0.0058 17 6 1.8500 -2.4845 -0.0126 18 6 1.6946 -2.9552 -1.4359 19 1 1.9102 -2.2833 -2.2534 20 6 1.2771 -4.2437 -1.6941 21 7 1.0140 -5.0617 -0.6984 22 14 1.0838 -4.8269 -3.4582 23 1 1.4390 -3.7233 -4.3861 24 1 1.9833 -5.9839 -3.6983 25 1 -0.3239 -5.2374 -3.6923 26 1 -0.3634 -0.0056 1.0277 27 1 -0.3634 -0.8873 -0.5186 28 1 -0.3633 0.8927 -0.5091 29 1 1.9719 2.1211 -0.0005 30 1 5.6585 1.0779 0.0062 31 1 6.6124 3.2099 0.0954 32 1 3.8263 4.9370 -1.3324 33 1 3.6791 7.4112 -1.4362 34 1 7.3114 5.4536 1.1166 35 1 2.5849 -3.1071 0.4978 36 1 0.8916 -2.5585 0.5011 37 1 0.7200 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434731221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:30 Heat of formation + Delta-G solvation = 117.841641 kcal Electronic energy + Delta-G solvation = -23139.163369 eV Core-core repulsion = 19533.529240 eV Total energy + Delta-G solvation = -3605.634129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.123 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68394 -40.83774 -39.86897 -36.11589 -35.09061 -33.52464 -32.85590 -31.91773 -31.22808 -30.68367 -26.84350 -26.47185 -25.13181 -24.67562 -23.11088 -21.92030 -20.34993 -19.89364 -18.71129 -17.94724 -17.28729 -16.87576 -16.74988 -16.11264 -15.73863 -15.37524 -15.06370 -14.79970 -14.54675 -14.36826 -14.14641 -13.63010 -13.12943 -12.55990 -12.48617 -12.40411 -11.86283 -11.76879 -11.50198 -11.19141 -11.11701 -10.93566 -10.62017 -10.58371 -10.36287 -10.29616 -10.02531 -9.83074 -9.63558 -9.15880 -8.71722 -8.09243 -7.59796 -6.32746 -4.40684 0.47645 0.65604 1.85678 2.35649 2.81305 3.15167 3.22086 3.23816 3.30793 3.33283 3.59518 3.86630 3.92781 4.13973 4.24222 4.30733 4.69628 4.99305 5.01153 5.15629 5.24432 5.47839 5.59022 5.75909 5.80821 5.95278 6.01787 6.06897 6.27182 6.36720 6.45348 6.76924 6.86410 6.96822 7.26696 7.56723 7.59928 7.80648 7.93289 8.10176 8.45999 8.50523 8.66970 9.26187 10.74635 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.031396 B = 0.002662 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.626407 B =10514.081303 C =10574.818674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.095 3.905 3 C -0.289 4.289 4 C 0.274 3.726 5 N -0.632 5.632 6 C 0.713 3.287 7 O -0.544 6.544 8 N -0.675 5.675 9 C 0.177 3.823 10 C -0.129 4.129 11 C 0.064 3.936 12 N -0.265 5.265 13 N -0.225 5.225 14 C 0.016 3.984 15 N -0.317 5.317 16 N -0.314 5.314 17 C 0.257 3.743 18 C -0.537 4.537 19 H 0.065 0.935 20 C 0.066 3.934 21 N -0.891 5.891 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.280 1.280 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.410 0.590 31 H 0.415 0.585 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 16.466 1.290 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.320 4.320 4 C 0.021 3.979 5 N -0.281 5.281 6 C 0.413 3.587 7 O -0.417 6.417 8 N -0.324 5.324 9 C 0.068 3.932 10 C -0.161 4.161 11 C -0.099 4.099 12 N -0.109 5.109 13 N -0.066 5.066 14 C -0.152 4.152 15 N -0.148 5.148 16 N -0.097 5.097 17 C 0.140 3.860 18 C -0.576 4.576 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.178 0.822 30 H 0.246 0.754 31 H 0.252 0.748 32 H 0.182 0.818 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.522 16.971 1.705 18.642 hybrid contribution -0.097 -1.878 -1.219 2.241 sum 7.425 15.093 0.487 16.828 Atomic orbital electron populations 1.20395 0.87778 1.03981 1.02652 1.21074 0.95011 0.87019 1.00575 1.21208 0.89538 0.99894 1.21333 1.18595 0.86180 0.89343 1.03739 1.41245 1.08259 1.03147 1.75481 1.15546 0.84139 0.80834 0.78215 1.90922 1.22981 1.73143 1.54625 1.42418 1.09747 1.03745 1.76472 1.18515 0.96944 0.83241 0.94471 1.22531 0.99469 0.96532 0.97572 1.24256 0.97952 0.91281 0.96416 1.72901 0.99736 1.32462 1.05806 1.72944 1.13174 1.10268 1.10236 1.24208 1.00880 0.91088 0.99018 1.77260 1.00193 1.08081 1.29223 1.49032 1.00749 1.07913 1.51986 1.19734 0.96058 0.71170 0.99048 1.21348 1.46939 0.97997 0.91296 0.91668 1.24936 0.94621 0.96040 0.98192 1.69931 1.44804 1.06991 1.31117 0.86298 0.77937 0.78807 0.83639 1.19572 1.20633 1.20585 0.90980 0.89809 0.90531 0.82211 0.75430 0.74752 0.81827 0.80730 0.80972 0.92928 0.92659 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 9.89 36.00 0.36 -1.09 16 2 C 0.09 1.88 6.92 -82.28 -0.57 1.31 16 3 C -0.29 -5.49 9.52 -39.84 -0.38 -5.87 16 4 C 0.27 5.11 8.11 -154.37 -1.25 3.85 16 5 N -0.63 -8.40 5.45 -15.51 -0.08 -8.48 16 6 C 0.71 8.83 8.31 -86.92 -0.72 8.10 16 7 O -0.54 -8.40 11.18 5.28 0.06 -8.34 16 8 N -0.67 -5.49 5.36 -14.01 -0.08 -5.56 16 9 C 0.18 1.63 6.35 -83.41 -0.53 1.10 16 10 C -0.13 -1.29 8.82 -39.03 -0.34 -1.63 16 11 C 0.06 0.60 11.30 -17.43 -0.20 0.40 16 12 N -0.27 -3.09 11.50 30.51 0.35 -2.74 16 13 N -0.23 -2.56 11.49 30.68 0.35 -2.20 16 14 C 0.02 0.14 11.27 -17.16 -0.19 -0.05 16 15 N -0.32 -6.85 12.59 31.44 0.40 -6.45 16 16 N -0.31 -7.08 3.59 -58.33 -0.21 -7.29 16 17 C 0.26 6.35 5.81 -5.19 -0.03 6.32 16 18 C -0.54 -14.30 9.39 -34.44 -0.32 -14.63 16 19 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 20 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -24.39 13.29 55.43 0.74 -23.66 16 22 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.16 2.93 5.91 -52.49 -0.31 2.62 16 30 H 0.41 4.06 8.84 -40.82 -0.36 3.70 16 31 H 0.42 1.77 8.84 -40.82 -0.36 1.41 16 32 H 0.16 1.73 6.53 -52.48 -0.34 1.39 16 33 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.17 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.05 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.35 7.65 -51.93 -0.40 0.95 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -33.26 328.60 -6.66 -39.92 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.83 Total: 4.90 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -4.28 Total: -0.54 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 1.47 Total: -56.40 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.06 Total: -8.34 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.26 -6.66 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434731221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.757 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds