Wall clock time and date at job start Tue Mar 31 2020 07:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35238 * 126.06807 * 2 1 4 4 C 1.40403 * 107.86579 * 179.84713 * 3 2 1 5 5 N 1.40192 * 125.97411 * 180.16314 * 4 3 2 6 6 C 1.34769 * 119.99883 * 0.27249 * 5 4 3 7 7 O 1.21593 * 120.00293 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00121 * 179.97438 * 6 5 4 9 9 C 1.39565 * 120.00196 * 174.71039 * 8 6 5 10 10 C 1.39645 * 121.08821 * 327.70373 * 9 8 6 11 11 C 1.38306 * 117.89072 * 179.74233 * 10 9 8 12 12 N 1.32063 * 119.92451 * 0.53444 * 11 10 9 13 13 N 1.28307 * 122.37940 * 359.72257 * 12 11 10 14 14 C 1.31805 * 122.25621 * 359.97438 * 13 12 11 15 15 N 1.31206 * 108.05418 * 0.41728 * 4 3 2 16 16 N 1.34965 * 126.06844 * 180.30368 * 2 1 3 17 17 C 1.46497 * 125.97658 * 359.97438 * 16 2 1 18 18 C 1.50708 * 109.47032 * 89.99919 * 17 16 2 19 19 H 1.07992 * 119.99757 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99752 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99776 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47076 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46746 * 120.00490 * 22 20 18 25 25 H 1.48497 * 109.46928 * 239.99923 * 22 20 18 26 26 H 1.09006 * 109.47506 * 269.68948 * 1 2 3 27 27 H 1.09005 * 109.47166 * 149.69544 * 1 2 3 28 28 H 1.08998 * 109.47150 * 29.69435 * 1 2 3 29 29 H 1.08001 * 126.06857 * 359.96562 * 3 2 1 30 30 H 0.96994 * 120.00050 * 180.27155 * 5 4 3 31 31 H 0.97001 * 119.99541 * 354.71366 * 8 6 5 32 32 H 1.08004 * 121.05910 * 359.97438 * 10 9 8 33 33 H 1.07991 * 120.03773 * 180.23558 * 11 10 9 34 34 H 1.08007 * 120.13508 * 180.02562 * 14 13 12 35 35 H 1.09007 * 109.46938 * 209.99512 * 17 16 2 36 36 H 1.08995 * 109.47610 * 329.99930 * 17 16 2 37 37 H 0.97003 * 119.99286 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0036 5 7 4.7737 1.4751 0.0080 6 6 4.6369 2.8158 0.0146 7 8 3.5276 3.3138 0.0173 8 7 5.7297 3.6047 0.0194 9 6 5.5911 4.9895 -0.0852 10 6 4.5501 5.5564 -0.8235 11 6 4.4724 6.9361 -0.8783 12 7 5.3728 7.6721 -0.2525 13 7 6.3338 7.1553 0.4225 14 6 6.4899 5.8518 0.5394 15 7 3.6336 -0.6575 -0.0035 16 7 2.3016 -1.0909 -0.0058 17 6 1.8500 -2.4845 -0.0126 18 6 1.6946 -2.9552 -1.4359 19 1 1.9102 -2.2833 -2.2534 20 6 1.2771 -4.2437 -1.6941 21 7 1.0140 -5.0617 -0.6984 22 14 1.0838 -4.8269 -3.4582 23 1 1.4390 -3.7233 -4.3861 24 1 1.9833 -5.9839 -3.6983 25 1 -0.3239 -5.2374 -3.6923 26 1 -0.3634 -0.0056 1.0277 27 1 -0.3634 -0.8873 -0.5186 28 1 -0.3633 0.8927 -0.5091 29 1 1.9719 2.1211 -0.0005 30 1 5.6585 1.0779 0.0062 31 1 6.6124 3.2099 0.0954 32 1 3.8263 4.9370 -1.3324 33 1 3.6791 7.4112 -1.4362 34 1 7.3114 5.4536 1.1166 35 1 2.5849 -3.1071 0.4978 36 1 0.8916 -2.5585 0.5011 37 1 0.7200 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434731221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:29 Heat of formation + Delta-G solvation = 94.436603 kcal Electronic energy + Delta-G solvation = -23140.178287 eV Core-core repulsion = 19533.529240 eV Total energy + Delta-G solvation = -3606.649047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.123 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.64515 -42.08347 -40.96901 -37.09685 -36.30310 -35.37551 -33.62553 -33.24931 -32.67035 -31.90635 -28.61864 -27.89311 -26.08022 -25.52158 -24.77263 -23.04204 -21.58038 -21.23859 -19.78361 -18.93561 -18.76581 -18.12803 -17.71081 -17.45647 -16.91140 -16.75315 -16.28478 -15.92064 -15.82877 -15.58788 -15.27313 -14.69179 -14.37932 -14.36182 -13.82098 -13.70677 -13.57494 -13.18347 -12.87496 -12.69950 -12.68557 -12.27998 -12.11519 -11.85311 -11.73828 -11.41375 -11.40354 -11.11222 -10.76099 -10.73487 -9.98144 -9.60287 -9.14652 -8.33311 -6.50647 -0.31342 -0.03872 0.80005 0.99015 1.37056 1.39051 1.50145 1.53772 1.90970 2.21392 2.34283 2.61953 2.81444 2.96903 3.19211 3.48641 3.56460 3.81768 3.95417 4.13454 4.35459 4.44455 4.49887 4.68005 4.77458 4.78498 4.86807 4.94080 4.96827 5.04222 5.15657 5.21657 5.37153 5.53707 5.65614 5.80781 5.89135 6.24632 6.48946 6.62416 7.01212 7.10165 7.20601 7.71302 8.72849 Molecular weight = 302.12amu Principal moments of inertia in cm(-1) A = 0.031396 B = 0.002662 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.626407 B =10514.081303 C =10574.818674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.089 3.911 3 C -0.295 4.295 4 C 0.288 3.712 5 N -0.623 5.623 6 C 0.717 3.283 7 O -0.573 6.573 8 N -0.650 5.650 9 C 0.171 3.829 10 C -0.139 4.139 11 C 0.067 3.933 12 N -0.293 5.293 13 N -0.254 5.254 14 C 0.031 3.969 15 N -0.354 5.354 16 N -0.342 5.342 17 C 0.275 3.725 18 C -0.551 4.551 19 H 0.050 0.950 20 C 0.023 3.977 21 N -0.918 5.918 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.268 1.268 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.170 0.830 30 H 0.427 0.573 31 H 0.437 0.563 32 H 0.157 0.843 33 H 0.201 0.799 34 H 0.210 0.790 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 17.436 0.751 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.325 4.325 4 C 0.033 3.967 5 N -0.274 5.274 6 C 0.416 3.584 7 O -0.448 6.448 8 N -0.300 5.300 9 C 0.062 3.938 10 C -0.170 4.170 11 C -0.097 4.097 12 N -0.136 5.136 13 N -0.094 5.094 14 C -0.138 4.138 15 N -0.184 5.184 16 N -0.125 5.125 17 C 0.156 3.844 18 C -0.589 4.589 19 H 0.069 0.931 20 C -0.178 4.178 21 N -0.556 5.556 22 Si 0.795 3.205 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.193 1.193 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.187 0.813 30 H 0.265 0.735 31 H 0.278 0.722 32 H 0.175 0.825 33 H 0.218 0.782 34 H 0.226 0.774 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.127 17.986 1.179 19.772 hybrid contribution -0.206 -2.054 -1.013 2.300 sum 7.921 15.932 0.166 17.793 Atomic orbital electron populations 1.20511 0.85486 1.04430 1.04091 1.21740 0.96655 0.86431 0.99348 1.21404 0.89757 0.99978 1.21403 1.18852 0.87767 0.88907 1.01141 1.41163 1.07679 1.03172 1.75420 1.15602 0.84624 0.80478 0.77654 1.90901 1.24593 1.73522 1.55742 1.42067 1.09694 1.03045 1.75243 1.18622 0.97119 0.83394 0.94616 1.22593 0.99696 0.96848 0.97911 1.24612 0.97986 0.91135 0.95926 1.72838 1.00494 1.33508 1.06729 1.72874 1.13717 1.11629 1.11133 1.24669 1.01092 0.89984 0.98074 1.77177 1.00122 1.09675 1.31457 1.48789 1.01651 1.07550 1.54494 1.19254 0.94956 0.72435 0.97756 1.21466 1.47395 0.98290 0.91794 0.93144 1.25721 0.94013 0.95964 1.02134 1.70010 1.45162 1.07435 1.33030 0.85317 0.78413 0.78106 0.78700 1.19748 1.20081 1.19334 0.88965 0.91482 0.87838 0.81250 0.73459 0.72219 0.82516 0.78207 0.77352 0.95658 0.93018 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.73 9.89 71.24 0.70 -2.03 16 2 C 0.09 3.50 6.92 41.38 0.29 3.78 16 3 C -0.29 -10.98 9.52 22.11 0.21 -10.77 16 4 C 0.29 10.54 8.11 133.32 1.08 11.62 16 5 N -0.62 -15.51 5.45 -321.24 -1.75 -17.26 16 6 C 0.72 16.27 8.31 179.06 1.49 17.76 16 7 O -0.57 -16.78 11.18 -4.01 -0.04 -16.82 16 8 N -0.65 -8.78 5.36 -316.51 -1.70 -10.48 16 9 C 0.17 2.75 6.35 38.51 0.24 3.00 16 10 C -0.14 -2.55 8.82 22.63 0.20 -2.35 16 11 C 0.07 1.17 11.30 84.67 0.96 2.13 16 12 N -0.29 -6.51 11.50 -57.39 -0.66 -7.17 16 13 N -0.25 -5.36 11.49 -56.85 -0.65 -6.01 16 14 C 0.03 0.45 11.27 84.96 0.96 1.40 16 15 N -0.35 -15.44 12.59 -54.44 -0.69 -16.13 16 16 N -0.34 -15.72 3.59 -338.44 -1.22 -16.94 16 17 C 0.27 14.02 5.81 85.64 0.50 14.52 16 18 C -0.55 -29.96 9.39 25.60 0.24 -29.72 16 19 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 20 C 0.02 1.21 5.46 84.65 0.46 1.67 16 21 N -0.92 -50.73 13.29 21.45 0.28 -50.45 16 22 Si 0.97 42.00 29.54 68.60 2.03 44.02 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 26 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.07 2.33 7.71 -2.38 -0.02 2.31 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.17 6.00 5.91 -2.91 -0.02 5.98 16 30 H 0.43 7.59 8.84 -92.71 -0.82 6.77 16 31 H 0.44 2.21 8.84 -92.71 -0.82 1.39 16 32 H 0.16 3.15 6.53 -2.91 -0.02 3.13 16 33 H 0.20 2.18 8.06 -2.92 -0.02 2.16 16 34 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.05 2.62 7.65 -2.39 -0.02 2.60 16 37 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -72.82 328.60 2.44 -70.38 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.49 Total: 15.86 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 7.33 Total: 11.00 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -6.38 Total: -124.44 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.04 Total: -16.82 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -72.82 2.44 -70.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434731221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.814 kcal (2) G-P(sol) polarization free energy of solvation -72.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds