Wall clock time and date at job start Tue Mar 31 2020 07:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46874 * 60.00435 * 3 2 1 6 6 H 1.48498 * 109.47024 * 300.00562 * 3 2 1 7 7 C 1.40272 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99705 * 157.81556 * 7 2 1 9 9 C 1.40890 * 120.00645 * 337.81629 * 7 2 1 10 10 C 1.40707 * 120.32593 * 324.09184 * 9 7 2 11 11 C 1.37598 * 119.88404 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.56661 * 0.02562 * 11 10 9 13 13 C 1.38218 * 120.68104 * 359.97438 * 12 11 10 14 14 C 1.39227 * 120.08843 * 359.71893 * 13 12 11 15 15 C 1.47434 * 120.28199 * 180.30142 * 14 13 12 16 16 O 1.21613 * 119.99833 * 174.18735 * 15 14 13 17 17 N 1.34770 * 120.00380 * 354.18207 * 15 14 13 18 18 C 1.46500 * 120.00612 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47224 * 179.97438 * 18 17 15 20 20 H 1.09003 * 109.29632 * 65.41908 * 19 18 17 21 21 C 1.52923 * 109.29873 * 184.99884 * 19 18 17 22 22 C 1.53343 * 108.67328 * 171.06930 * 21 19 18 23 23 C 1.53072 * 108.42284 * 292.46897 * 22 21 19 24 24 C 1.50179 * 109.89130 * 48.90421 * 23 22 21 25 25 O 1.21277 * 118.24631 * 162.43794 * 24 23 22 26 26 N 1.33352 * 123.50686 * 342.41536 * 24 23 22 27 27 H 0.96999 * 120.00078 * 174.29887 * 1 2 3 28 28 H 1.07998 * 120.05741 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.71019 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.65984 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.95878 * 179.97438 * 13 12 11 32 32 H 0.97006 * 119.99514 * 0.02562 * 17 15 14 33 33 H 1.08997 * 109.46927 * 300.00565 * 18 17 15 34 34 H 1.09003 * 109.46483 * 59.99927 * 18 17 15 35 35 H 1.09004 * 109.60503 * 290.82824 * 21 19 18 36 36 H 1.09000 * 109.60221 * 51.31031 * 21 19 18 37 37 H 1.09002 * 109.67727 * 52.20105 * 22 21 19 38 38 H 1.09002 * 109.67641 * 172.70195 * 22 21 19 39 39 H 1.09004 * 109.39820 * 169.02668 * 23 22 21 40 40 H 1.08993 * 109.40258 * 288.77084 * 23 22 21 41 41 H 0.96997 * 117.94709 * 182.23053 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 -0.0006 5 1 1.8817 2.3964 1.2126 6 1 1.8816 2.3964 -1.2124 7 6 2.0076 -1.2148 -0.0005 8 1 3.0277 -1.2493 -0.3537 9 6 1.3814 -2.3901 0.4596 10 6 0.4782 -2.3386 1.5373 11 6 -0.1279 -3.4920 1.9796 12 6 0.1441 -4.7101 1.3718 13 6 1.0274 -4.7877 0.3115 14 6 1.6514 -3.6370 -0.1627 15 6 2.5892 -3.7138 -1.2977 16 8 3.0498 -2.6949 -1.7759 17 7 2.9362 -4.9131 -1.8052 18 6 3.8686 -4.9895 -2.9326 19 6 4.0924 -6.4550 -3.3110 20 1 3.1597 -6.8768 -3.6855 21 6 5.1592 -6.5376 -4.4036 22 6 5.5339 -8.0097 -4.6135 23 6 6.2503 -8.5105 -3.3569 24 6 5.4609 -8.1364 -2.1353 25 8 5.6986 -8.7181 -1.0980 26 7 4.5129 -7.1986 -2.1301 27 1 -0.4850 -0.8359 -0.0834 28 1 0.2615 -1.3955 2.0169 29 1 -0.8203 -3.4493 2.8072 30 1 -0.3395 -5.6065 1.7312 31 1 1.2307 -5.7415 -0.1524 32 1 2.5686 -5.7258 -1.4239 33 1 3.4523 -4.4531 -3.7853 34 1 4.8195 -4.5385 -2.6488 35 1 4.7646 -6.1247 -5.3320 36 1 6.0413 -5.9759 -4.0966 37 1 4.6315 -8.5979 -4.7804 38 1 6.1957 -8.1007 -5.4748 39 1 6.3506 -9.5948 -3.4052 40 1 7.2406 -8.0587 -3.3005 41 1 4.0758 -6.9988 -1.2876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601538708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:27 Heat of formation + Delta-G solvation = -69.955864 kcal Electronic energy + Delta-G solvation = -24208.025870 eV Core-core repulsion = 20665.495822 eV Total energy + Delta-G solvation = -3542.530047 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59805 -39.05833 -37.41208 -36.68650 -34.45901 -33.86714 -32.74489 -30.82366 -29.81818 -29.36243 -26.65162 -25.15067 -23.41509 -22.66701 -21.96821 -20.93621 -19.61698 -19.38861 -18.16788 -17.49594 -16.51804 -16.39924 -15.60968 -15.41904 -14.83926 -14.64187 -14.35321 -14.20609 -14.00468 -13.94549 -13.78539 -13.56099 -12.98887 -12.67525 -12.36663 -12.21375 -11.97030 -11.69316 -11.58067 -11.35710 -11.33104 -11.16821 -10.95114 -10.79449 -10.40694 -10.20126 -9.91719 -9.69219 -9.26714 -9.05532 -8.64469 -8.55325 -7.83200 -7.65516 -7.19412 -4.48996 2.18526 2.49817 2.69755 3.02719 3.17465 3.27711 3.39141 3.72733 3.99020 4.01837 4.24989 4.35692 4.42884 4.50443 4.58707 4.85723 4.94316 5.09203 5.34876 5.38240 5.41832 5.47910 5.53382 5.69570 5.74049 5.81140 5.88426 6.02495 6.13044 6.43637 6.58645 6.66830 6.90919 6.95397 7.18320 7.23351 7.44697 7.55415 7.67910 7.84044 8.02903 8.05846 8.16327 8.25255 8.68503 8.80846 9.24248 10.00253 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.003728 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.607045 B = 7508.780799 C = 8535.529307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.034 3.966 3 Si 1.074 2.926 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.468 4.468 8 H 0.102 0.898 9 C 0.123 3.877 10 C -0.197 4.197 11 C -0.076 4.076 12 C -0.257 4.257 13 C -0.044 4.044 14 C -0.267 4.267 15 C 0.565 3.435 16 O -0.533 6.533 17 N -0.753 5.753 18 C 0.114 3.886 19 C 0.129 3.871 20 H 0.082 0.918 21 C -0.131 4.131 22 C -0.122 4.122 23 C -0.136 4.136 24 C 0.519 3.481 25 O -0.560 6.560 26 N -0.714 5.714 27 H 0.298 0.702 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.389 0.611 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.936 -11.286 -9.183 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.495 4.495 8 H 0.120 0.880 9 C 0.118 3.882 10 C -0.216 4.216 11 C -0.094 4.094 12 C -0.276 4.276 13 C -0.063 4.063 14 C -0.272 4.272 15 C 0.359 3.641 16 O -0.410 6.410 17 N -0.409 5.409 18 C -0.011 4.011 19 C 0.024 3.976 20 H 0.100 0.900 21 C -0.169 4.169 22 C -0.160 4.160 23 C -0.175 4.175 24 C 0.306 3.694 25 O -0.439 6.439 26 N -0.368 5.368 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.224 0.776 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 7.264 -9.226 -9.173 14.901 hybrid contribution -0.411 -2.097 0.423 2.178 sum 6.853 -11.323 -8.751 15.866 Atomic orbital electron populations 1.70332 1.08269 1.34247 1.28486 1.27232 0.95631 1.04613 0.91356 0.83518 0.75733 0.73081 0.77941 1.19908 1.20059 1.20271 1.21098 1.02527 0.92307 1.33531 0.87975 1.17484 0.89334 0.91933 0.89457 1.21247 1.03825 0.97131 0.99444 1.20753 0.97598 0.93197 0.97896 1.20253 1.07341 0.96681 1.03355 1.20700 0.95132 0.95291 0.95187 1.19386 1.10088 0.95431 1.02271 1.18375 0.80956 0.81846 0.82888 1.90701 1.54964 1.33826 1.61553 1.46022 1.49540 1.09316 1.36039 1.21552 0.94667 0.93945 0.90940 1.21307 0.98379 0.91814 0.86149 0.89967 1.21890 0.99012 0.97417 0.98588 1.21657 1.01184 0.95767 0.97399 1.21659 0.99941 1.03692 0.92246 1.20198 0.79679 0.78813 0.90708 1.90773 1.66896 1.52512 1.33687 1.45685 1.39506 1.38847 1.12721 0.88900 0.87657 0.88820 0.88831 0.89267 0.77622 0.90484 0.91327 0.89182 0.90298 0.90974 0.90216 0.88220 0.88179 0.76273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.94 12.68 55.56 0.70 -20.24 16 2 C 0.03 0.86 4.97 -17.30 -0.09 0.78 16 3 Si 1.07 22.35 29.99 -169.99 -5.10 17.25 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.47 -12.68 7.52 -37.81 -0.28 -12.96 16 8 H 0.10 2.90 6.13 -52.48 -0.32 2.58 16 9 C 0.12 3.20 5.08 -106.54 -0.54 2.66 16 10 C -0.20 -4.85 8.04 -38.88 -0.31 -5.17 16 11 C -0.08 -1.65 10.01 -39.60 -0.40 -2.05 16 12 C -0.26 -5.32 10.03 -39.37 -0.39 -5.71 16 13 C -0.04 -0.91 9.52 -39.22 -0.37 -1.29 16 14 C -0.27 -6.33 5.92 -104.37 -0.62 -6.95 16 15 C 0.57 12.55 7.72 -12.52 -0.10 12.46 16 16 O -0.53 -13.59 13.64 5.27 0.07 -13.52 16 17 N -0.75 -12.20 5.12 -61.38 -0.31 -12.51 16 18 C 0.11 1.47 5.35 -4.04 -0.02 1.45 16 19 C 0.13 1.19 3.24 -68.38 -0.22 0.97 16 20 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 21 C -0.13 -0.89 5.30 -26.59 -0.14 -1.03 16 22 C -0.12 -0.72 6.03 -26.52 -0.16 -0.88 16 23 C -0.14 -1.08 6.03 -28.10 -0.17 -1.24 16 24 C 0.52 6.32 7.71 -11.87 -0.09 6.23 16 25 O -0.56 -9.35 17.78 5.56 0.10 -9.25 16 26 N -0.71 -7.99 5.11 -54.85 -0.28 -8.27 16 27 H 0.30 8.09 6.90 -40.82 -0.28 7.81 16 28 H 0.11 2.64 7.18 -52.49 -0.38 2.26 16 29 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.09 1.51 6.44 -52.49 -0.34 1.17 16 32 H 0.39 5.49 5.41 -40.82 -0.22 5.27 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 37 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.40 4.95 7.16 -40.82 -0.29 4.66 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -32.31 336.64 -8.93 -41.23 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -5.27 Total: 12.97 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -3.91 Total: -12.74 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.11 Total: -41.01 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.10 Total: 17.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.31 -8.93 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601538708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.723 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds