Wall clock time and date at job start Tue Mar 31 2020 07:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47034 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46874 * 60.00435 * 3 2 1 6 6 H 1.48498 * 109.47024 * 300.00562 * 3 2 1 7 7 C 1.40272 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99705 * 157.81556 * 7 2 1 9 9 C 1.40890 * 120.00645 * 337.81629 * 7 2 1 10 10 C 1.40707 * 120.32593 * 324.09184 * 9 7 2 11 11 C 1.37598 * 119.88404 * 180.02562 * 10 9 7 12 12 C 1.38824 * 120.56661 * 0.02562 * 11 10 9 13 13 C 1.38218 * 120.68104 * 359.97438 * 12 11 10 14 14 C 1.39227 * 120.08843 * 359.71893 * 13 12 11 15 15 C 1.47434 * 120.28199 * 180.30142 * 14 13 12 16 16 O 1.21613 * 119.99833 * 174.18735 * 15 14 13 17 17 N 1.34770 * 120.00380 * 354.18207 * 15 14 13 18 18 C 1.46500 * 120.00612 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47224 * 179.97438 * 18 17 15 20 20 H 1.09003 * 109.29632 * 65.41908 * 19 18 17 21 21 C 1.52923 * 109.29873 * 184.99884 * 19 18 17 22 22 C 1.53343 * 108.67328 * 171.06930 * 21 19 18 23 23 C 1.53072 * 108.42284 * 292.46897 * 22 21 19 24 24 C 1.50179 * 109.89130 * 48.90421 * 23 22 21 25 25 O 1.21277 * 118.24631 * 162.43794 * 24 23 22 26 26 N 1.33352 * 123.50686 * 342.41536 * 24 23 22 27 27 H 0.96999 * 120.00078 * 174.29887 * 1 2 3 28 28 H 1.07998 * 120.05741 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.71019 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.65984 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.95878 * 179.97438 * 13 12 11 32 32 H 0.97006 * 119.99514 * 0.02562 * 17 15 14 33 33 H 1.08997 * 109.46927 * 300.00565 * 18 17 15 34 34 H 1.09003 * 109.46483 * 59.99927 * 18 17 15 35 35 H 1.09004 * 109.60503 * 290.82824 * 21 19 18 36 36 H 1.09000 * 109.60221 * 51.31031 * 21 19 18 37 37 H 1.09002 * 109.67727 * 52.20105 * 22 21 19 38 38 H 1.09002 * 109.67641 * 172.70195 * 22 21 19 39 39 H 1.09004 * 109.39820 * 169.02668 * 23 22 21 40 40 H 1.08993 * 109.40258 * 288.77084 * 23 22 21 41 41 H 0.96997 * 117.94709 * 182.23053 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 -0.0006 5 1 1.8817 2.3964 1.2126 6 1 1.8816 2.3964 -1.2124 7 6 2.0076 -1.2148 -0.0005 8 1 3.0277 -1.2493 -0.3537 9 6 1.3814 -2.3901 0.4596 10 6 0.4782 -2.3386 1.5373 11 6 -0.1279 -3.4920 1.9796 12 6 0.1441 -4.7101 1.3718 13 6 1.0274 -4.7877 0.3115 14 6 1.6514 -3.6370 -0.1627 15 6 2.5892 -3.7138 -1.2977 16 8 3.0498 -2.6949 -1.7759 17 7 2.9362 -4.9131 -1.8052 18 6 3.8686 -4.9895 -2.9326 19 6 4.0924 -6.4550 -3.3110 20 1 3.1597 -6.8768 -3.6855 21 6 5.1592 -6.5376 -4.4036 22 6 5.5339 -8.0097 -4.6135 23 6 6.2503 -8.5105 -3.3569 24 6 5.4609 -8.1364 -2.1353 25 8 5.6986 -8.7181 -1.0980 26 7 4.5129 -7.1986 -2.1301 27 1 -0.4850 -0.8359 -0.0834 28 1 0.2615 -1.3955 2.0169 29 1 -0.8203 -3.4493 2.8072 30 1 -0.3395 -5.6065 1.7312 31 1 1.2307 -5.7415 -0.1524 32 1 2.5686 -5.7258 -1.4239 33 1 3.4523 -4.4531 -3.7853 34 1 4.8195 -4.5385 -2.6488 35 1 4.7646 -6.1247 -5.3320 36 1 6.0413 -5.9759 -4.0966 37 1 4.6315 -8.5979 -4.7804 38 1 6.1957 -8.1007 -5.4748 39 1 6.3506 -9.5948 -3.4052 40 1 7.2406 -8.0587 -3.3005 41 1 4.0758 -6.9988 -1.2876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601538708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:26 Heat of formation + Delta-G solvation = -92.378589 kcal Electronic energy + Delta-G solvation = -24208.998192 eV Core-core repulsion = 20665.495822 eV Total energy + Delta-G solvation = -3543.502370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54929 -40.69829 -38.92482 -37.96901 -35.99439 -35.35483 -33.72931 -32.20899 -31.44122 -30.87839 -27.77373 -26.84733 -24.55192 -23.62164 -23.35585 -22.68012 -21.20313 -20.13205 -19.96502 -18.65613 -17.89653 -17.39046 -16.93467 -16.60203 -16.32221 -16.15775 -15.82922 -15.57116 -15.43931 -15.18046 -14.81906 -14.54264 -14.37410 -14.08374 -13.91507 -13.70485 -13.38388 -12.93663 -12.73873 -12.69216 -12.51710 -12.34113 -12.07159 -11.95536 -11.91138 -11.84147 -11.49824 -10.92136 -10.84906 -10.42678 -10.21192 -10.08278 -9.62386 -9.52522 -9.12586 -6.46428 0.37638 0.88585 1.45680 1.57245 1.60680 1.76429 2.05266 2.22969 2.29956 2.48841 2.71482 3.48328 3.53045 3.61477 3.76706 3.91833 4.12958 4.17963 4.22148 4.25601 4.41695 4.52174 4.60547 4.68107 4.81134 4.85120 4.88953 4.95742 5.05220 5.10704 5.11813 5.33775 5.40733 5.49060 5.63203 5.66526 5.68239 5.86770 5.93904 6.18144 6.29519 6.31431 6.61469 6.81927 6.88032 7.12357 7.54660 8.02652 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.003728 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.607045 B = 7508.780799 C = 8535.529307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.001 3.999 3 Si 1.118 2.882 4 H -0.274 1.274 5 H -0.258 1.258 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.077 0.923 9 C 0.098 3.902 10 C -0.223 4.223 11 C -0.072 4.072 12 C -0.244 4.244 13 C -0.043 4.043 14 C -0.285 4.285 15 C 0.560 3.440 16 O -0.574 6.574 17 N -0.731 5.731 18 C 0.112 3.888 19 C 0.138 3.862 20 H 0.104 0.896 21 C -0.130 4.130 22 C -0.113 4.113 23 C -0.132 4.132 24 C 0.513 3.487 25 O -0.614 6.614 26 N -0.714 5.714 27 H 0.281 0.719 28 H 0.088 0.912 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.402 0.598 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 -13.792 -10.496 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.215 4.215 3 Si 0.936 3.064 4 H -0.199 1.199 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.539 4.539 8 H 0.095 0.905 9 C 0.094 3.906 10 C -0.242 4.242 11 C -0.091 4.091 12 C -0.263 4.263 13 C -0.062 4.062 14 C -0.289 4.289 15 C 0.353 3.647 16 O -0.455 6.455 17 N -0.386 5.386 18 C -0.012 4.012 19 C 0.034 3.966 20 H 0.122 0.878 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.171 4.171 24 C 0.302 3.698 25 O -0.496 6.496 26 N -0.365 5.365 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.239 0.761 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.271 -11.781 -10.516 17.386 hybrid contribution -0.441 -1.611 0.855 1.877 sum 6.830 -13.392 -9.661 17.870 Atomic orbital electron populations 1.70445 1.08631 1.32947 1.31733 1.28409 0.95758 1.07267 0.90046 0.82988 0.74553 0.69976 0.78907 1.19874 1.18272 1.19228 1.20996 1.02023 0.94017 1.36904 0.90538 1.17872 0.89883 0.92899 0.89910 1.21207 1.05330 0.97753 0.99960 1.21155 0.96986 0.92688 0.98250 1.20810 1.05911 0.97530 1.02057 1.21134 0.94017 0.95997 0.95016 1.19842 1.10498 0.95845 1.02764 1.18361 0.80683 0.82933 0.82740 1.90681 1.56388 1.35751 1.62630 1.45746 1.48929 1.07848 1.36117 1.21767 0.93014 0.96873 0.89576 1.21420 1.00458 0.88733 0.86021 0.87791 1.21958 0.97997 0.98525 0.98315 1.21649 1.01827 0.94568 0.96959 1.21723 0.99802 1.04456 0.91130 1.21014 0.79348 0.78044 0.91386 1.90745 1.68441 1.54495 1.35953 1.45814 1.39075 1.38598 1.12995 0.90689 0.89396 0.85807 0.84714 0.84930 0.76101 0.90134 0.92779 0.86972 0.90742 0.90193 0.87588 0.87309 0.87197 0.77346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.27 12.68 21.88 0.28 -45.00 16 2 C 0.00 0.05 4.97 85.37 0.42 0.47 16 3 Si 1.12 46.95 29.99 68.60 2.06 49.00 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.51 -29.42 7.52 23.41 0.18 -29.25 16 8 H 0.08 4.68 6.13 -2.91 -0.02 4.66 16 9 C 0.10 5.34 5.08 -21.11 -0.11 5.23 16 10 C -0.22 -11.27 8.04 22.72 0.18 -11.08 16 11 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 12 C -0.24 -9.25 10.03 22.41 0.22 -9.03 16 13 C -0.04 -1.67 9.52 22.50 0.21 -1.46 16 14 C -0.28 -13.59 5.92 -19.70 -0.12 -13.70 16 15 C 0.56 25.19 7.72 86.67 0.67 25.86 16 16 O -0.57 -30.51 13.64 -4.07 -0.06 -30.57 16 17 N -0.73 -22.86 5.12 -466.36 -2.39 -25.25 16 18 C 0.11 2.74 5.35 86.38 0.46 3.20 16 19 C 0.14 2.17 3.24 45.11 0.15 2.32 16 20 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 21 C -0.13 -1.32 5.30 30.68 0.16 -1.15 16 22 C -0.11 -0.85 6.03 30.73 0.19 -0.67 16 23 C -0.13 -1.73 6.03 29.71 0.18 -1.55 16 24 C 0.51 11.74 7.71 87.71 0.68 12.42 16 25 O -0.61 -20.32 17.78 -3.02 -0.05 -20.38 16 26 N -0.71 -14.66 5.11 -446.65 -2.28 -16.94 16 27 H 0.28 16.17 6.90 -92.71 -0.64 15.54 16 28 H 0.09 4.64 7.18 -2.91 -0.02 4.62 16 29 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.13 3.91 6.44 -2.91 -0.02 3.90 16 32 H 0.40 10.39 5.41 -92.70 -0.50 9.89 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 35 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 37 H 0.08 0.54 8.13 -2.39 -0.02 0.52 16 38 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.39 9.13 7.16 -92.71 -0.66 8.46 16 Total: -1.00 -76.37 336.64 1.29 -75.07 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.04 Total: 35.27 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 3.70 Total: -21.21 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -4.39 Total: -87.19 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.11 Total: -50.95 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.06 Total: 49.00 kcal Total: -76.37 1.29 -75.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601538708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.306 kcal (2) G-P(sol) polarization free energy of solvation -76.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds