Wall clock time and date at job start Tue Mar 31 2020 07:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00090 * 2 1 4 4 H 1.48497 * 109.46935 * 95.17161 * 3 2 1 5 5 H 1.48491 * 109.47376 * 215.17736 * 3 2 1 6 6 H 1.48499 * 109.46993 * 335.17860 * 3 2 1 7 7 C 1.37878 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99770 * 353.62513 * 7 2 1 9 9 C 1.50694 * 120.00067 * 173.63395 * 7 2 1 10 10 H 1.08996 * 109.47569 * 27.06232 * 9 7 2 11 11 C 1.53005 * 109.47077 * 147.06323 * 9 7 2 12 12 C 1.50694 * 109.47187 * 293.96880 * 11 9 7 13 13 O 1.21283 * 120.00101 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99919 * 179.97438 * 12 11 9 15 15 N 1.40102 * 119.99780 * 180.02562 * 14 12 11 16 16 C 1.46761 * 124.34746 * 254.72716 * 15 14 12 17 17 C 1.54669 * 105.38090 * 162.85523 * 16 15 14 18 18 C 1.54630 * 101.68251 * 25.76560 * 17 16 15 19 19 C 1.34417 * 124.34870 * 75.02271 * 15 14 12 20 20 O 1.21279 * 124.94230 * 0.43382 * 19 15 14 21 21 C 1.50707 * 109.47010 * 267.06020 * 9 7 2 22 22 C 1.38230 * 120.00286 * 305.20136 * 21 9 7 23 23 C 1.38233 * 120.00112 * 179.80857 * 22 21 9 24 24 C 1.38235 * 120.00034 * 0.39632 * 23 22 21 25 25 C 1.38240 * 119.99802 * 359.85857 * 24 23 22 26 26 C 1.38235 * 119.99660 * 125.47485 * 21 9 7 27 27 H 0.96995 * 120.00024 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46966 * 53.97259 * 11 9 7 29 29 H 1.09000 * 109.46741 * 173.96809 * 11 9 7 30 30 H 0.96995 * 120.00197 * 0.02562 * 14 12 11 31 31 H 1.09000 * 110.24821 * 281.97857 * 16 15 14 32 32 H 1.08999 * 110.24868 * 43.98444 * 16 15 14 33 33 H 1.08996 * 111.19186 * 267.59243 * 17 16 15 34 34 H 1.09000 * 110.81910 * 143.77424 * 17 16 15 35 35 H 1.09002 * 110.48394 * 216.31135 * 18 17 16 36 36 H 1.09004 * 110.59935 * 93.72173 * 18 17 16 37 37 H 1.08008 * 119.99767 * 359.97438 * 22 21 9 38 38 H 1.08000 * 119.99941 * 180.23191 * 23 22 21 39 39 H 1.07993 * 119.99892 * 179.83645 * 24 23 22 40 40 H 1.07992 * 119.99839 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00030 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6059 1.9833 1.3944 5 1 3.4877 1.4743 -0.8065 6 1 1.3962 2.6818 -0.5877 7 6 2.0045 -1.1940 -0.0005 8 1 1.4695 -2.1265 0.1029 9 6 3.5045 -1.1980 -0.1452 10 1 3.9087 -0.2595 0.2342 11 6 4.0907 -2.3650 0.6519 12 6 3.8548 -2.1375 2.1227 13 8 3.2744 -1.1404 2.4967 14 7 4.2877 -3.0426 3.0226 15 7 4.0679 -2.8313 4.3901 16 6 5.1058 -2.4171 5.3413 17 6 4.3417 -1.8942 6.5803 18 6 3.0061 -2.6660 6.4732 19 6 2.8804 -2.9874 5.0003 20 8 1.8572 -3.3358 4.4502 21 6 3.8685 -1.3501 -1.5998 22 6 3.3732 -2.4152 -2.3285 23 6 3.7039 -2.5525 -3.6636 24 6 4.5364 -1.6292 -4.2680 25 6 5.0359 -0.5669 -3.5379 26 6 4.7021 -0.4275 -2.2037 27 1 -0.4850 0.8400 0.0004 28 1 3.6079 -3.2930 0.3457 29 1 5.1619 -2.4330 0.4620 30 1 4.7515 -3.8403 2.7236 31 1 5.7309 -3.2681 5.6119 32 1 5.7153 -1.6219 4.9121 33 1 4.1769 -0.8186 6.5165 34 1 4.8692 -2.1528 7.4984 35 1 2.1761 -2.0391 6.7990 36 1 3.0447 -3.5826 7.0618 37 1 2.7257 -3.1387 -1.8553 38 1 3.3139 -3.3826 -4.2339 39 1 4.7968 -1.7380 -5.3104 40 1 5.6867 0.1541 -4.0099 41 1 5.0923 0.4024 -1.6334 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793786708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:00 Heat of formation + Delta-G solvation = -37.885843 kcal Electronic energy + Delta-G solvation = -24651.349021 eV Core-core repulsion = 21110.209634 eV Total energy + Delta-G solvation = -3541.139387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66598 -40.43573 -39.62604 -37.59420 -35.96035 -35.30618 -33.78284 -31.62607 -31.37457 -29.97857 -28.56539 -27.76051 -24.54938 -23.34806 -22.88519 -22.56991 -21.01212 -20.88306 -19.07580 -18.86016 -18.27401 -17.54516 -17.20975 -16.58797 -16.22055 -16.08928 -15.66442 -15.46990 -15.21065 -14.95552 -14.80860 -14.64816 -14.19331 -14.03488 -13.93115 -13.66241 -13.58487 -13.33860 -12.94889 -12.73976 -12.44210 -12.13388 -11.95523 -11.94045 -11.85137 -11.52512 -11.46796 -11.17500 -10.92615 -10.64823 -10.47406 -9.85174 -9.61738 -9.31971 -8.26584 -6.24290 0.66732 0.70378 0.86949 1.25912 1.34563 1.37193 1.49765 1.73684 2.36713 3.05258 3.09741 3.23479 3.37322 3.60046 3.95992 4.03888 4.09458 4.23795 4.24818 4.31782 4.40378 4.46975 4.58681 4.60539 4.65283 4.80333 4.81517 4.84859 5.01584 5.04887 5.15429 5.18612 5.35941 5.39158 5.63103 5.74677 5.76901 5.81690 6.00593 6.01169 6.28570 6.34749 6.41889 6.75701 6.94182 7.39262 7.58658 8.91326 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.004681 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.083042 B = 5980.770102 C = 6678.427620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.016 3.984 3 Si 0.929 3.071 4 H -0.289 1.289 5 H -0.221 1.221 6 H -0.296 1.296 7 C -0.470 4.470 8 H 0.024 0.976 9 C 0.060 3.940 10 H 0.036 0.964 11 C -0.102 4.102 12 C 0.512 3.488 13 O -0.547 6.547 14 N -0.520 5.520 15 N -0.430 5.430 16 C 0.099 3.901 17 C -0.115 4.115 18 C -0.135 4.135 19 C 0.493 3.507 20 O -0.585 6.585 21 C -0.062 4.062 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.149 4.149 27 H 0.258 0.742 28 H 0.096 0.904 29 H 0.123 0.877 30 H 0.430 0.570 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.827 -6.859 7.236 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.216 1.216 5 H -0.144 1.144 6 H -0.223 1.223 7 C -0.508 4.508 8 H 0.042 0.958 9 C 0.041 3.959 10 H 0.055 0.945 11 C -0.144 4.144 12 C 0.299 3.701 13 O -0.420 6.420 14 N -0.270 5.270 15 N -0.254 5.254 16 C -0.022 4.022 17 C -0.153 4.153 18 C -0.176 4.176 19 C 0.283 3.717 20 O -0.463 6.463 21 C -0.063 4.063 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.156 4.156 25 C -0.140 4.140 26 C -0.167 4.167 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.141 0.859 30 H 0.274 0.726 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.162 0.838 35 H 0.121 0.879 36 H 0.161 0.839 37 H 0.122 0.878 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.767 -6.228 7.118 21.016 hybrid contribution -0.759 0.537 -0.098 0.935 sum 18.008 -5.691 7.020 20.148 Atomic orbital electron populations 1.70068 1.08359 1.27285 1.54020 1.25748 0.95166 1.02725 0.94331 0.86037 0.80632 0.79569 0.78298 1.21562 1.14401 1.22261 1.20826 0.90811 0.92299 1.46840 0.95765 1.17972 0.94135 0.94860 0.88967 0.94536 1.21601 1.03639 1.01512 0.87613 1.21777 0.76970 0.82225 0.89091 1.90732 1.39867 1.30482 1.80931 1.45035 1.62455 1.25647 0.93849 1.47884 1.11853 1.68841 0.96815 1.22753 0.89647 1.01869 0.87883 1.22726 0.93481 1.00288 0.98787 1.22336 1.01690 1.04919 0.88694 1.22576 0.81841 0.75362 0.91932 1.90749 1.33098 1.49450 1.72990 1.20389 0.94201 0.94523 0.97181 1.20992 0.99269 0.98461 0.95020 1.21378 0.98524 1.00267 0.94211 1.21346 0.98562 0.94960 1.00727 1.21348 1.00486 0.98747 0.93465 1.21254 0.99721 0.99279 0.96436 0.93297 0.88601 0.85866 0.72611 0.86457 0.90203 0.90602 0.83773 0.87932 0.83913 0.87792 0.84509 0.83506 0.83954 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -66.13 13.96 21.45 0.30 -65.83 16 2 C 0.02 1.03 5.47 84.66 0.46 1.50 16 3 Si 0.93 49.79 27.01 68.60 1.85 51.64 16 4 H -0.29 -16.02 7.11 99.48 0.71 -15.31 16 5 H -0.22 -10.33 5.15 99.48 0.51 -9.82 16 6 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 7 C -0.47 -28.30 6.92 25.60 0.18 -28.13 16 8 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 9 C 0.06 2.82 1.23 -12.28 -0.02 2.81 16 10 H 0.04 1.80 4.88 -2.39 -0.01 1.78 16 11 C -0.10 -3.83 4.95 29.85 0.15 -3.68 16 12 C 0.51 21.45 7.64 87.65 0.67 22.12 16 13 O -0.55 -29.71 15.23 -3.04 -0.05 -29.76 16 14 N -0.52 -16.49 6.17 -173.53 -1.07 -17.56 16 15 N -0.43 -12.76 3.30 -459.49 -1.52 -14.27 16 16 C 0.10 1.61 7.61 86.90 0.66 2.27 16 17 C -0.11 -1.45 7.19 31.72 0.23 -1.22 16 18 C -0.14 -2.65 6.86 30.59 0.21 -2.44 16 19 C 0.49 17.33 7.96 87.90 0.70 18.03 16 20 O -0.58 -28.79 17.95 -3.03 -0.05 -28.85 16 21 C -0.06 -2.57 4.77 -19.86 -0.09 -2.67 16 22 C -0.12 -4.63 8.89 22.27 0.20 -4.43 16 23 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 24 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 25 C -0.12 -3.64 10.05 22.27 0.22 -3.42 16 26 C -0.15 -5.42 8.97 22.27 0.20 -5.22 16 27 H 0.26 16.97 8.31 -92.71 -0.77 16.20 16 28 H 0.10 3.47 7.94 -2.39 -0.02 3.45 16 29 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.43 9.62 8.83 -213.32 -1.88 7.74 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 4.26 7.84 -2.91 -0.02 4.24 16 38 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.11 4.00 7.09 -2.91 -0.02 3.98 16 Total: -1.00 -99.43 345.69 2.65 -96.78 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -1.03 Total: 19.68 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.22 Total: -11.84 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -2.29 Total: -97.66 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -0.10 Total: -58.60 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.85 Total: 51.64 kcal Total: -99.43 2.65 -96.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793786708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.899 kcal (2) G-P(sol) polarization free energy of solvation -99.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds