Wall clock time and date at job start Tue Mar 31 2020 08:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47191 * 2 1 4 4 N 1.46495 * 109.47420 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00415 * 264.75006 * 4 3 2 6 6 H 1.07998 * 119.99991 * 146.16053 * 5 4 3 7 7 C 1.38947 * 119.99859 * 326.17034 * 5 4 3 8 8 N 1.31414 * 120.00104 * 337.67210 * 7 5 4 9 9 Si 1.86794 * 120.00229 * 157.67589 * 7 5 4 10 10 H 1.48504 * 109.47330 * 89.99687 * 9 7 5 11 11 H 1.48501 * 109.47499 * 209.99627 * 9 7 5 12 12 H 1.48506 * 109.47188 * 329.99457 * 9 7 5 13 13 C 1.34783 * 119.99758 * 84.75123 * 4 3 2 14 14 O 1.21297 * 119.99686 * 180.02562 * 13 4 3 15 15 C 1.50702 * 119.99982 * 359.97438 * 13 4 3 16 16 N 1.46497 * 109.46736 * 180.02562 * 15 13 4 17 17 C 1.46736 * 125.62325 * 269.99502 * 16 15 13 18 18 C 1.50830 * 106.25285 * 179.83363 * 17 16 15 19 19 C 1.37575 * 133.23794 * 179.58385 * 18 17 16 20 20 C 1.38474 * 119.95388 * 180.30702 * 19 18 17 21 21 C 1.38378 * 120.19204 * 0.27709 * 20 19 18 22 22 C 1.37948 * 120.32004 * 359.97438 * 21 20 19 23 23 C 1.39623 * 119.82263 * 0.02562 * 22 21 20 24 24 C 1.34420 * 125.62704 * 90.02762 * 16 15 13 25 25 O 1.21554 * 124.85830 * 359.97438 * 24 16 15 26 26 H 1.08996 * 109.46887 * 300.00126 * 1 2 3 27 27 H 1.09005 * 109.46693 * 60.00192 * 1 2 3 28 28 H 1.09007 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47231 * 240.00073 * 2 1 3 30 30 H 1.09003 * 109.47199 * 119.99906 * 2 1 3 31 31 H 1.08999 * 109.47040 * 59.99411 * 3 2 1 32 32 H 1.09003 * 109.46972 * 300.00045 * 3 2 1 33 33 H 0.96995 * 120.00643 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47049 * 60.00342 * 15 13 4 35 35 H 1.09000 * 109.46777 * 300.00040 * 15 13 4 36 36 H 1.09001 * 110.09880 * 299.22209 * 17 16 15 37 37 H 1.09001 * 110.09313 * 60.82982 * 17 16 15 38 38 H 1.07999 * 120.02602 * 0.58395 * 19 18 17 39 39 H 1.08000 * 119.90366 * 180.25369 * 20 19 18 40 40 H 1.08004 * 119.84364 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.08383 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5513 1.1832 6 1 5.1328 1.0400 1.3101 7 6 3.6713 2.3194 2.2184 8 7 2.8002 3.2686 1.9596 9 14 4.2123 2.0027 3.9780 10 1 5.4017 2.8361 4.2879 11 1 3.1073 2.3528 4.9063 12 1 4.5579 0.5674 4.1390 13 6 4.1794 1.3356 -1.1615 14 8 5.3923 1.3351 -1.1609 15 6 3.4263 1.2154 -2.4613 16 7 4.3788 1.1129 -3.5697 17 6 4.9344 2.2408 -4.3262 18 6 5.8628 1.6434 -5.3539 19 6 6.6528 2.1878 -6.3399 20 6 7.4107 1.3622 -7.1531 21 6 7.3719 -0.0103 -6.9810 22 6 6.5791 -0.5668 -5.9988 23 6 5.8120 0.2591 -5.1748 24 6 4.8875 -0.0299 -4.0618 25 8 4.6234 -1.1423 -3.6492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 2.4384 3.8051 2.6821 34 1 2.7995 2.0960 -2.6008 35 1 2.8001 0.3236 -2.4372 36 1 4.1334 2.7934 -4.8171 37 1 5.4916 2.9000 -3.6605 38 1 6.6852 3.2586 -6.4766 39 1 8.0338 1.7907 -7.9242 40 1 7.9650 -0.6489 -7.6188 41 1 6.5520 -1.6384 -5.8675 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264328601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:14 Heat of formation + Delta-G solvation = -19.926318 kcal Electronic energy + Delta-G solvation = -24573.448052 eV Core-core repulsion = 21033.087449 eV Total energy + Delta-G solvation = -3540.360604 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96182 -38.69983 -37.75549 -35.84495 -35.14403 -32.86580 -31.74590 -31.18252 -31.11014 -27.87810 -26.54549 -25.78653 -24.45962 -22.82836 -21.67273 -21.00781 -20.09774 -18.81696 -16.99229 -16.83647 -16.53652 -16.38533 -15.74614 -15.27014 -14.76675 -14.52476 -14.34128 -14.08599 -13.92406 -13.73789 -13.22714 -13.11570 -13.06840 -12.92600 -12.55297 -12.29126 -11.91014 -11.69435 -11.65248 -11.44660 -11.20302 -11.08898 -10.98040 -10.62135 -10.36816 -10.25544 -9.94368 -9.62647 -9.23190 -9.02142 -8.96843 -8.79838 -8.06856 -7.51279 -6.36202 -3.96252 0.81003 1.22518 2.90699 3.08434 3.15644 3.25077 3.32214 3.82375 3.87253 4.13405 4.16665 4.54138 4.80960 4.84017 4.87432 4.99245 5.21844 5.31354 5.40287 5.42622 5.53611 5.59690 5.65195 5.71619 5.73901 5.83703 5.86980 6.02787 6.16960 6.19300 6.22247 6.28966 6.38928 6.47454 6.60501 6.73070 6.75223 6.92371 7.25418 7.29649 7.57676 8.20051 8.41159 8.50642 9.16065 9.37650 9.96347 10.67185 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.020432 B = 0.003865 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.053776 B = 7242.903863 C = 7834.635700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.143 4.143 3 C 0.099 3.901 4 N -0.437 5.437 5 C -0.305 4.305 6 H 0.091 0.909 7 C 0.037 3.963 8 N -0.869 5.869 9 Si 0.916 3.084 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.439 3.561 14 O -0.572 6.572 15 C 0.120 3.880 16 N -0.588 5.588 17 C 0.141 3.859 18 C -0.076 4.076 19 C -0.105 4.105 20 C -0.094 4.094 21 C -0.132 4.132 22 C -0.049 4.049 23 C -0.147 4.147 24 C 0.561 3.439 25 O -0.529 6.529 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -0.390 -15.351 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C -0.025 4.025 4 N -0.157 5.157 5 C -0.433 4.433 6 H 0.109 0.891 7 C -0.167 4.167 8 N -0.508 5.508 9 Si 0.743 3.257 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.194 1.194 13 C 0.225 3.775 14 O -0.455 6.455 15 C -0.004 4.004 16 N -0.320 5.320 17 C 0.018 3.982 18 C -0.077 4.077 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.150 4.150 22 C -0.068 4.068 23 C -0.151 4.151 24 C 0.350 3.650 25 O -0.406 6.406 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.101 -0.812 -14.891 14.913 hybrid contribution 0.142 0.056 0.971 0.983 sum 0.244 -0.756 -13.920 13.943 Atomic orbital electron populations 1.21673 0.96216 1.00786 1.01513 1.21999 0.94987 0.99173 1.01995 1.21725 0.81907 0.94657 1.04236 1.43517 1.04635 1.62798 1.04721 1.19445 1.06831 1.28322 0.88652 0.89103 1.25301 0.97250 0.93668 1.00477 1.69906 1.30980 1.16903 1.32966 0.86101 0.78295 0.79233 0.82117 1.20296 1.20742 1.19363 1.20657 0.88573 0.83236 0.85025 1.90537 1.13846 1.54625 1.86494 1.21358 0.90150 1.04126 0.84810 1.47363 1.44992 1.06770 1.32839 1.20488 0.95917 0.89762 0.92021 1.20537 0.96801 0.94665 0.95708 1.20287 0.96841 1.00279 0.94929 1.21264 0.97862 0.93567 0.98527 1.21083 0.99857 0.95329 0.98715 1.20865 0.93224 1.00046 0.92708 1.20506 1.00862 0.94914 0.98783 1.18165 0.80294 0.84312 0.82269 1.90747 1.62302 1.23522 1.64029 0.92698 0.93179 0.93373 0.93074 0.91566 0.86554 0.93562 0.92210 0.88203 0.88066 0.88725 0.88115 0.85181 0.85216 0.85237 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.14 -2.64 6.17 -26.73 -0.16 -2.80 16 3 C 0.10 2.10 4.71 -4.05 -0.02 2.08 16 4 N -0.44 -11.06 2.56 -114.82 -0.29 -11.36 16 5 C -0.30 -8.49 8.98 -14.93 -0.13 -8.62 16 6 H 0.09 2.70 7.70 -52.49 -0.40 2.30 16 7 C 0.04 0.97 4.92 -17.47 -0.09 0.88 16 8 N -0.87 -22.84 11.33 55.50 0.63 -22.21 16 9 Si 0.92 20.59 29.61 -169.99 -5.03 15.56 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 13 C 0.44 10.90 7.66 -10.98 -0.08 10.81 16 14 O -0.57 -16.44 16.25 5.54 0.09 -16.35 16 15 C 0.12 2.31 5.14 -5.19 -0.03 2.28 16 16 N -0.59 -10.88 2.45 -177.51 -0.44 -11.31 16 17 C 0.14 2.03 7.38 -5.00 -0.04 1.99 16 18 C -0.08 -1.04 6.38 -104.27 -0.66 -1.70 16 19 C -0.11 -1.10 10.03 -39.74 -0.40 -1.50 16 20 C -0.09 -0.87 10.05 -39.44 -0.40 -1.27 16 21 C -0.13 -1.34 10.02 -39.64 -0.40 -1.73 16 22 C -0.05 -0.66 10.10 -39.17 -0.40 -1.05 16 23 C -0.15 -2.37 6.26 -105.05 -0.66 -3.03 16 24 C 0.56 11.19 7.97 -12.62 -0.10 11.08 16 25 O -0.53 -12.27 17.71 5.32 0.09 -12.17 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.05 0.94 6.59 -51.93 -0.34 0.59 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.12 2.72 5.34 -51.93 -0.28 2.45 16 32 H 0.05 0.87 6.66 -51.93 -0.35 0.52 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.10 1.60 7.41 -51.93 -0.38 1.21 16 35 H 0.10 1.89 6.40 -51.93 -0.33 1.56 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -34.81 346.43 -8.37 -43.19 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.45 Total: 3.77 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -3.19 Total: 5.68 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.10 Total: -44.89 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: 0.18 Total: -28.53 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.81 -8.37 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264328601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.259 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds