Wall clock time and date at job start Tue Mar 31 2020 08:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47191 * 2 1 4 4 N 1.46495 * 109.47420 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00415 * 264.75006 * 4 3 2 6 6 H 1.07998 * 119.99991 * 146.16053 * 5 4 3 7 7 C 1.38947 * 119.99859 * 326.17034 * 5 4 3 8 8 N 1.31414 * 120.00104 * 337.67210 * 7 5 4 9 9 Si 1.86794 * 120.00229 * 157.67589 * 7 5 4 10 10 H 1.48504 * 109.47330 * 89.99687 * 9 7 5 11 11 H 1.48501 * 109.47499 * 209.99627 * 9 7 5 12 12 H 1.48506 * 109.47188 * 329.99457 * 9 7 5 13 13 C 1.34783 * 119.99758 * 84.75123 * 4 3 2 14 14 O 1.21297 * 119.99686 * 180.02562 * 13 4 3 15 15 C 1.50702 * 119.99982 * 359.97438 * 13 4 3 16 16 N 1.46497 * 109.46736 * 180.02562 * 15 13 4 17 17 C 1.46736 * 125.62325 * 269.99502 * 16 15 13 18 18 C 1.50830 * 106.25285 * 179.83363 * 17 16 15 19 19 C 1.37575 * 133.23794 * 179.58385 * 18 17 16 20 20 C 1.38474 * 119.95388 * 180.30702 * 19 18 17 21 21 C 1.38378 * 120.19204 * 0.27709 * 20 19 18 22 22 C 1.37948 * 120.32004 * 359.97438 * 21 20 19 23 23 C 1.39623 * 119.82263 * 0.02562 * 22 21 20 24 24 C 1.34420 * 125.62704 * 90.02762 * 16 15 13 25 25 O 1.21554 * 124.85830 * 359.97438 * 24 16 15 26 26 H 1.08996 * 109.46887 * 300.00126 * 1 2 3 27 27 H 1.09005 * 109.46693 * 60.00192 * 1 2 3 28 28 H 1.09007 * 109.46910 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47231 * 240.00073 * 2 1 3 30 30 H 1.09003 * 109.47199 * 119.99906 * 2 1 3 31 31 H 1.08999 * 109.47040 * 59.99411 * 3 2 1 32 32 H 1.09003 * 109.46972 * 300.00045 * 3 2 1 33 33 H 0.96995 * 120.00643 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47049 * 60.00342 * 15 13 4 35 35 H 1.09000 * 109.46777 * 300.00040 * 15 13 4 36 36 H 1.09001 * 110.09880 * 299.22209 * 17 16 15 37 37 H 1.09001 * 110.09313 * 60.82982 * 17 16 15 38 38 H 1.07999 * 120.02602 * 0.58395 * 19 18 17 39 39 H 1.08000 * 119.90366 * 180.25369 * 20 19 18 40 40 H 1.08004 * 119.84364 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.08383 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5513 1.1832 6 1 5.1328 1.0400 1.3101 7 6 3.6713 2.3194 2.2184 8 7 2.8002 3.2686 1.9596 9 14 4.2123 2.0027 3.9780 10 1 5.4017 2.8361 4.2879 11 1 3.1073 2.3528 4.9063 12 1 4.5579 0.5674 4.1390 13 6 4.1794 1.3356 -1.1615 14 8 5.3923 1.3351 -1.1609 15 6 3.4263 1.2154 -2.4613 16 7 4.3788 1.1129 -3.5697 17 6 4.9344 2.2408 -4.3262 18 6 5.8628 1.6434 -5.3539 19 6 6.6528 2.1878 -6.3399 20 6 7.4107 1.3622 -7.1531 21 6 7.3719 -0.0103 -6.9810 22 6 6.5791 -0.5668 -5.9988 23 6 5.8120 0.2591 -5.1748 24 6 4.8875 -0.0299 -4.0618 25 8 4.6234 -1.1423 -3.6492 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 2.4384 3.8051 2.6821 34 1 2.7995 2.0960 -2.6008 35 1 2.8001 0.3236 -2.4372 36 1 4.1334 2.7934 -4.8171 37 1 5.4916 2.9000 -3.6605 38 1 6.6852 3.2586 -6.4766 39 1 8.0338 1.7907 -7.9242 40 1 7.9650 -0.6489 -7.6188 41 1 6.5520 -1.6384 -5.8675 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264328601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:13 Heat of formation + Delta-G solvation = -41.883492 kcal Electronic energy + Delta-G solvation = -24574.400187 eV Core-core repulsion = 21033.087449 eV Total energy + Delta-G solvation = -3541.312738 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20468 -40.44660 -39.05030 -37.39901 -36.87926 -34.63953 -33.15831 -32.85537 -32.05490 -29.33120 -27.73820 -27.43341 -26.20510 -24.03395 -22.68223 -22.49773 -21.51821 -20.48728 -18.92805 -18.21166 -18.02173 -17.75881 -17.03871 -16.79373 -16.43653 -15.89009 -15.87494 -15.46104 -15.43381 -15.07886 -14.63337 -14.51169 -14.40441 -14.15921 -14.03494 -13.46967 -13.41999 -13.28604 -13.09841 -12.92213 -12.75420 -12.63957 -12.26174 -12.12984 -12.02403 -12.02079 -11.56935 -11.08707 -10.91950 -10.86687 -10.09409 -9.87591 -9.61970 -9.50686 -8.38994 -6.08024 -0.21542 0.34788 1.32748 1.38276 1.49171 1.59688 1.83827 1.93131 2.27525 2.81267 2.93834 3.06627 3.11499 3.39958 3.89526 3.92330 4.03898 4.07292 4.18420 4.26323 4.32106 4.36302 4.44413 4.48597 4.52948 4.57507 4.72219 4.77991 4.95735 4.99517 5.10773 5.12317 5.26679 5.36697 5.38219 5.43052 5.44759 5.51726 5.57787 5.88720 5.94521 6.15097 6.47529 6.96449 7.13233 7.39757 7.98725 8.62637 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.020432 B = 0.003865 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.053776 B = 7242.903863 C = 7834.635700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C 0.100 3.900 4 N -0.447 5.447 5 C -0.346 4.346 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.878 5.878 9 Si 0.976 3.024 10 H -0.277 1.277 11 H -0.260 1.260 12 H -0.275 1.275 13 C 0.423 3.577 14 O -0.626 6.626 15 C 0.131 3.869 16 N -0.595 5.595 17 C 0.136 3.864 18 C -0.081 4.081 19 C -0.101 4.101 20 C -0.076 4.076 21 C -0.125 4.125 22 C -0.065 4.065 23 C -0.190 4.190 24 C 0.542 3.458 25 O -0.584 6.584 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.277 0.723 34 H 0.138 0.862 35 H 0.104 0.896 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.165 0.835 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 1.302 -17.520 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.174 4.174 3 C -0.023 4.023 4 N -0.165 5.165 5 C -0.474 4.474 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.516 5.516 9 Si 0.799 3.201 10 H -0.202 1.202 11 H -0.185 1.185 12 H -0.200 1.200 13 C 0.211 3.789 14 O -0.513 6.513 15 C 0.007 3.993 16 N -0.324 5.324 17 C 0.015 3.985 18 C -0.082 4.082 19 C -0.119 4.119 20 C -0.094 4.094 21 C -0.142 4.142 22 C -0.084 4.084 23 C -0.193 4.193 24 C 0.334 3.666 25 O -0.466 6.466 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.182 0.818 39 H 0.192 0.808 40 H 0.182 0.818 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.322 0.925 -17.076 17.104 hybrid contribution 0.338 -0.412 1.585 1.672 sum 0.016 0.514 -15.491 15.500 Atomic orbital electron populations 1.21620 0.92728 1.02369 1.02587 1.21908 0.97890 0.96955 1.00692 1.21855 0.79544 0.96457 1.04472 1.43790 1.06265 1.62172 1.04293 1.19291 1.06967 1.30124 0.91009 0.92739 1.25944 0.96990 0.92819 1.03355 1.69939 1.30734 1.16533 1.34351 0.85228 0.78455 0.78604 0.77807 1.20232 1.18455 1.19966 1.21626 0.88403 0.82129 0.86736 1.90482 1.16282 1.56937 1.87560 1.21249 0.89933 1.05836 0.82324 1.47574 1.44611 1.07933 1.32327 1.20750 0.97388 0.88475 0.91904 1.20660 0.97616 0.93324 0.96609 1.20757 0.95365 1.02303 0.93460 1.21847 0.96505 0.92911 0.98127 1.21501 0.98625 0.96584 0.97513 1.21073 0.93911 0.99885 0.93575 1.20409 1.02634 0.96876 0.99427 1.19015 0.80520 0.83922 0.83176 1.90679 1.64380 1.25429 1.66128 0.92623 0.91070 0.91589 0.93323 0.94010 0.88442 0.90861 0.91335 0.84417 0.87801 0.84692 0.89385 0.81754 0.80757 0.81820 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.14 -5.06 6.17 30.59 0.19 -4.87 16 3 C 0.10 4.27 4.71 86.38 0.41 4.67 16 4 N -0.45 -23.55 2.56 -635.55 -1.63 -25.17 16 5 C -0.35 -20.27 8.98 84.04 0.75 -19.51 16 6 H 0.05 3.51 7.70 -2.91 -0.02 3.49 16 7 C 0.01 0.66 4.92 84.93 0.42 1.08 16 8 N -0.88 -46.15 11.33 21.66 0.25 -45.90 16 9 Si 0.98 42.80 29.61 68.60 2.03 44.83 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 C 0.42 22.04 7.66 87.66 0.67 22.71 16 14 O -0.63 -38.38 16.25 -3.08 -0.05 -38.43 16 15 C 0.13 5.15 5.14 85.63 0.44 5.59 16 16 N -0.59 -22.65 2.45 -834.00 -2.05 -24.69 16 17 C 0.14 3.85 7.38 85.63 0.63 4.48 16 18 C -0.08 -2.12 6.38 -19.63 -0.13 -2.24 16 19 C -0.10 -1.74 10.03 22.17 0.22 -1.52 16 20 C -0.08 -1.05 10.05 22.36 0.22 -0.82 16 21 C -0.12 -2.14 10.02 22.23 0.22 -1.91 16 22 C -0.07 -1.73 10.10 22.54 0.23 -1.50 16 23 C -0.19 -6.28 6.26 -20.14 -0.13 -6.40 16 24 C 0.54 22.92 7.97 86.75 0.69 23.61 16 25 O -0.58 -29.28 17.71 -3.89 -0.07 -29.35 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.05 1.82 6.59 -2.39 -0.02 1.80 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 4.58 5.34 -2.39 -0.01 4.57 16 32 H 0.07 2.68 6.66 -2.39 -0.02 2.66 16 33 H 0.28 13.45 8.31 -92.71 -0.77 12.68 16 34 H 0.14 4.24 7.41 -2.39 -0.02 4.22 16 35 H 0.10 3.99 6.40 -2.39 -0.02 3.98 16 36 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 40 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 41 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -83.54 346.43 5.09 -78.45 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.04 Total: 19.93 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 5.56 Total: 20.34 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -3.43 Total: -95.77 kcal Atomic # 8 Polarization: -67.67 SS G_CDS: -0.12 Total: -67.78 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -83.54 5.09 -78.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264328601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.568 kcal (2) G-P(sol) polarization free energy of solvation -83.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds