Wall clock time and date at job start Tue Mar 31 2020 08:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47454 * 2 1 4 4 H 1.09002 * 109.47474 * 305.00667 * 3 2 1 5 5 C 1.52997 * 109.47200 * 185.00268 * 3 2 1 6 6 N 1.46504 * 109.46517 * 65.00622 * 3 2 1 7 7 C 1.47308 * 126.68883 * 239.97894 * 6 3 2 8 8 C 1.51577 * 103.59578 * 179.84038 * 7 6 3 9 9 O 1.21237 * 127.16144 * 180.24428 * 8 7 6 10 10 N 1.34772 * 105.68441 * 0.32167 * 8 7 6 11 11 C 1.39594 * 124.17780 * 179.97438 * 10 8 7 12 12 C 1.39404 * 119.82644 * 353.24581 * 11 10 8 13 13 C 1.36408 * 120.17208 * 179.76121 * 12 11 10 14 14 C 1.40850 * 119.82426 * 0.49339 * 13 12 11 15 15 C 1.41175 * 120.17363 * 179.73983 * 14 13 12 16 16 H 1.08000 * 119.99973 * 208.06805 * 15 14 13 17 17 C 1.39914 * 119.99896 * 28.07424 * 15 14 13 18 18 N 1.30862 * 120.00259 * 13.64954 * 17 15 14 19 19 Si 1.86807 * 120.00255 * 193.65155 * 17 15 14 20 20 H 1.48496 * 109.47019 * 89.99539 * 19 17 15 21 21 H 1.48491 * 109.47138 * 209.99968 * 19 17 15 22 22 H 1.48508 * 109.46670 * 330.00033 * 19 17 15 23 23 C 1.40854 * 119.65475 * 359.76339 * 14 13 12 24 24 C 1.36405 * 119.82369 * 0.02562 * 23 14 13 25 25 C 1.33793 * 111.64041 * 359.65717 * 10 8 7 26 26 O 1.21527 * 123.77001 * 180.22672 * 25 10 8 27 27 H 1.09000 * 109.47021 * 59.99579 * 1 2 3 28 28 H 1.08991 * 109.47088 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46556 * 299.99484 * 1 2 3 30 30 H 1.09009 * 109.46988 * 240.00801 * 2 1 3 31 31 H 1.08994 * 109.47704 * 120.00983 * 2 1 3 32 32 H 1.08997 * 109.47215 * 60.00185 * 5 3 2 33 33 H 1.08999 * 109.47240 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47233 * 300.00547 * 5 3 2 35 35 H 1.09002 * 110.60348 * 298.57001 * 7 6 3 36 36 H 1.09008 * 110.59599 * 61.35770 * 7 6 3 37 37 H 1.07990 * 119.91551 * 0.02562 * 12 11 10 38 38 H 1.08004 * 120.09121 * 180.25362 * 13 12 11 39 39 H 0.97000 * 120.00681 * 179.97438 * 18 17 15 40 40 H 1.08008 * 120.08768 * 179.97438 * 23 14 13 41 41 H 1.08002 * 119.91273 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5649 1.4442 -0.1258 6 7 1.6526 2.0973 1.2519 7 6 0.8101 3.2974 1.3934 8 6 0.7449 3.5122 2.8925 9 8 0.1515 4.3903 3.4813 10 7 1.4851 2.5251 3.4346 11 6 1.6865 2.3586 4.8058 12 6 1.2223 3.3247 5.6972 13 6 1.4110 3.1667 7.0389 14 6 2.0860 2.0289 7.5222 15 6 2.2902 1.8607 8.9089 16 1 3.1395 1.2967 9.2652 17 6 1.3921 2.4245 9.8217 18 7 0.2339 2.8721 9.4087 19 14 1.8464 2.5385 11.6301 20 1 2.5332 3.8296 11.8875 21 1 0.6147 2.4597 12.4558 22 1 2.7526 1.4165 11.9844 23 6 2.5567 1.0599 6.6147 24 6 2.3564 1.2301 5.2762 25 6 1.9975 1.7205 2.4964 26 8 2.6964 0.7569 2.7412 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.8532 0.9570 -1.0572 33 1 3.9283 2.4719 -0.1253 34 1 3.9995 0.9051 0.7160 35 1 1.2737 4.1518 0.9003 36 1 -0.1859 3.1165 0.9889 37 1 0.7082 4.1983 5.3248 38 1 1.0472 3.9140 7.7286 39 1 -0.3890 3.2627 10.0415 40 1 3.0756 0.1849 6.9776 41 1 2.7171 0.4883 4.5790 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286236607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:11 Heat of formation + Delta-G solvation = -14.621761 kcal Electronic energy + Delta-G solvation = -24814.373649 eV Core-core repulsion = 21274.243069 eV Total energy + Delta-G solvation = -3540.130581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.25376 -38.59573 -37.70969 -36.48668 -35.59191 -33.95790 -32.60803 -30.41185 -29.53803 -28.99600 -27.38070 -25.46565 -24.04652 -22.86455 -22.40648 -21.00388 -20.15457 -19.18478 -17.55579 -17.23184 -16.99416 -16.07185 -15.82430 -15.36199 -15.18562 -14.52870 -14.17843 -14.01233 -13.90367 -13.67737 -13.50220 -13.19331 -13.10185 -12.70529 -12.45083 -12.16852 -11.98169 -11.89658 -11.68286 -11.43160 -11.27283 -11.17845 -11.12820 -11.02668 -10.71721 -10.31621 -10.15382 -9.85837 -9.42685 -9.15244 -8.93872 -8.86436 -7.57329 -7.09661 -6.76637 -4.36168 1.88175 2.35039 2.56813 3.05439 3.07468 3.09523 3.10713 3.23753 3.62601 3.91958 4.20742 4.48593 4.63424 4.79109 4.87346 5.00591 5.05770 5.15264 5.36360 5.39099 5.48439 5.64933 5.67710 5.73776 5.86967 6.03838 6.10716 6.12484 6.21859 6.39255 6.43204 6.70332 6.90029 6.99891 7.09116 7.22824 7.57164 7.60896 7.64638 7.91240 8.02078 8.08237 8.25971 8.50826 8.59688 8.84901 8.93304 10.17056 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.003612 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.533497 B = 7750.605871 C = 8214.463079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.184 3.816 4 H 0.093 0.907 5 C -0.171 4.171 6 N -0.628 5.628 7 C 0.064 3.936 8 C 0.507 3.493 9 O -0.469 6.469 10 N -0.487 5.487 11 C -0.026 4.026 12 C -0.106 4.106 13 C -0.152 4.152 14 C 0.110 3.890 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.792 5.792 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.214 4.214 24 C -0.094 4.094 25 C 0.698 3.302 26 O -0.532 6.532 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.282 0.718 40 H 0.099 0.901 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 -0.456 -17.734 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C 0.082 3.918 4 H 0.111 0.889 5 C -0.229 4.229 6 N -0.368 5.368 7 C -0.062 4.062 8 C 0.295 3.705 9 O -0.341 6.341 10 N -0.222 5.222 11 C -0.116 4.116 12 C -0.126 4.126 13 C -0.172 4.172 14 C 0.107 3.893 15 C -0.485 4.485 16 H 0.098 0.902 17 C -0.145 4.145 18 N -0.417 5.417 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.235 4.235 24 C -0.113 4.113 25 C 0.402 3.598 26 O -0.406 6.406 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.093 0.907 40 H 0.117 0.883 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.346 -0.472 -17.251 17.261 hybrid contribution -0.044 0.135 0.829 0.841 sum 0.302 -0.337 -16.422 16.428 Atomic orbital electron populations 1.21729 0.95556 1.01830 1.01544 1.22008 0.96440 0.95955 1.03814 1.20907 0.95353 0.93062 0.82446 0.88872 1.22226 0.94701 1.02705 1.03250 1.47809 1.53699 1.29866 1.05450 1.22474 0.98318 0.90292 0.95137 1.20727 0.78607 0.81554 0.89655 1.90716 1.41699 1.32916 1.68737 1.43325 1.44634 1.26615 1.07676 1.17271 1.15301 1.01806 0.77185 1.20758 1.00448 0.97819 0.93577 1.20948 1.04476 0.98947 0.92795 1.17784 0.88724 0.89570 0.93198 1.19614 1.09067 1.29054 0.90782 0.90200 1.25953 0.93905 0.92882 1.01747 1.69821 1.05466 1.29036 1.37386 0.86245 0.78981 0.79828 0.81280 1.19242 1.20264 1.18575 1.20701 1.10267 1.00191 0.92299 1.20854 0.98097 0.95924 0.96434 1.15858 0.80534 0.82792 0.80664 1.90789 1.40179 1.27822 1.81850 0.92927 0.92594 0.92811 0.90648 0.89845 0.91251 0.92328 0.90585 0.86610 0.86678 0.86203 0.85889 0.90723 0.88295 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.80 37.16 0.36 -1.01 16 2 C -0.14 -1.39 5.38 -26.73 -0.14 -1.53 16 3 C 0.18 1.71 2.97 -67.93 -0.20 1.51 16 4 H 0.09 0.60 8.12 -51.93 -0.42 0.17 16 5 C -0.17 -1.61 9.23 37.16 0.34 -1.26 16 6 N -0.63 -7.82 2.34 -172.39 -0.40 -8.23 16 7 C 0.06 0.70 7.65 -4.32 -0.03 0.67 16 8 C 0.51 8.65 8.18 -10.56 -0.09 8.56 16 9 O -0.47 -9.27 15.03 5.59 0.08 -9.18 16 10 N -0.49 -9.63 2.81 -64.21 -0.18 -9.81 16 11 C -0.03 -0.63 6.57 -83.46 -0.55 -1.18 16 12 C -0.11 -2.67 9.24 -39.81 -0.37 -3.04 16 13 C -0.15 -4.07 8.61 -39.25 -0.34 -4.41 16 14 C 0.11 2.99 5.55 -106.81 -0.59 2.40 16 15 C -0.46 -12.16 9.04 -37.84 -0.34 -12.50 16 16 H 0.08 2.04 7.88 -52.49 -0.41 1.62 16 17 C 0.07 1.84 5.20 -17.34 -0.09 1.75 16 18 N -0.79 -20.67 10.94 55.55 0.61 -20.06 16 19 Si 0.91 18.73 29.58 -169.99 -5.03 13.70 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.21 -5.48 9.74 -39.25 -0.38 -5.87 16 24 C -0.09 -2.29 9.18 -39.81 -0.37 -2.66 16 25 C 0.70 12.28 7.68 -88.02 -0.68 11.60 16 26 O -0.53 -10.58 11.96 5.34 0.06 -10.51 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 30 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.08 1.08 6.81 -51.93 -0.35 0.72 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.95 6.96 -51.93 -0.36 0.59 16 35 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.12 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.12 2.93 5.33 -52.49 -0.28 2.65 16 38 H 0.12 3.38 6.27 -52.48 -0.33 3.05 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.10 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.13 3.10 5.14 -52.49 -0.27 2.83 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -30.96 335.61 -8.61 -39.56 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.35 Total: 6.44 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.46 Total: -6.96 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.02 Total: -38.10 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.15 Total: -19.70 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.96 -8.61 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286236607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.943 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds