Wall clock time and date at job start Tue Mar 31 2020 08:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46859 * 2 1 4 4 H 1.09002 * 109.47225 * 304.99948 * 3 2 1 5 5 C 1.47194 * 109.46782 * 184.99862 * 3 2 1 6 6 N 3.43550 * 154.82382 * 351.56876 * 2 1 3 7 7 N 1.46500 * 109.47052 * 65.00221 * 3 2 1 8 8 C 1.46499 * 120.00314 * 59.99305 * 7 3 2 9 9 C 1.34777 * 120.00061 * 239.99976 * 7 3 2 10 10 O 1.21284 * 119.99624 * 359.97438 * 9 7 3 11 11 C 1.50693 * 120.00564 * 179.97438 * 9 7 3 12 12 C 1.50694 * 109.47722 * 179.97438 * 11 9 7 13 13 C 1.38307 * 119.92877 * 269.72925 * 12 11 9 14 14 C 1.38097 * 120.06475 * 179.72227 * 13 12 11 15 15 C 1.38886 * 119.93422 * 0.56800 * 14 13 12 16 16 O 1.35748 * 120.06912 * 179.68322 * 15 14 13 17 17 C 1.34831 * 116.99642 * 174.48982 * 16 15 14 18 18 H 1.07999 * 120.00119 * 5.04852 * 17 16 15 19 19 C 1.38661 * 119.99735 * 185.05857 * 17 16 15 20 20 N 1.31554 * 119.99850 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99844 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46861 * 89.99968 * 21 19 17 23 23 H 1.48499 * 109.46946 * 209.99632 * 21 19 17 24 24 H 1.48500 * 109.47273 * 330.00213 * 21 19 17 25 25 C 1.38877 * 119.85747 * 359.70603 * 15 14 13 26 26 C 1.38099 * 119.93424 * 359.97438 * 25 15 14 27 27 H 1.08993 * 109.46997 * 299.99514 * 1 2 3 28 28 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46718 * 60.00136 * 1 2 3 30 30 H 1.08996 * 109.46718 * 119.99864 * 2 1 3 31 31 H 1.09003 * 109.46735 * 239.99999 * 2 1 3 32 32 H 1.09006 * 109.46904 * 90.00256 * 8 7 3 33 33 H 1.08997 * 109.47770 * 210.00128 * 8 7 3 34 34 H 1.09003 * 109.47493 * 330.00617 * 8 7 3 35 35 H 1.09000 * 109.47049 * 299.99880 * 11 9 7 36 36 H 1.09001 * 109.47369 * 59.99415 * 11 9 7 37 37 H 1.07997 * 119.96555 * 359.97321 * 13 12 11 38 38 H 1.08006 * 120.03717 * 180.27156 * 14 13 12 39 39 H 0.97005 * 119.99965 * 180.02562 * 20 19 17 40 40 H 1.08005 * 120.03153 * 179.97438 * 25 15 14 41 41 H 1.07995 * 119.96429 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5070 1.4443 -0.1209 6 7 4.6392 1.4457 -0.2143 7 7 1.6525 2.0975 1.2518 8 6 2.1138 1.5589 2.5337 9 6 0.8713 3.1954 1.2242 10 8 0.4897 3.6415 0.1629 11 6 0.4721 3.8689 2.5118 12 6 -0.3940 5.0636 2.2065 13 6 0.1854 6.3045 2.0127 14 6 -0.6051 7.4002 1.7271 15 6 -1.9842 7.2575 1.6461 16 8 -2.7644 8.3340 1.3719 17 6 -4.0815 8.1061 1.1948 18 1 -4.4844 7.1167 1.3532 19 6 -4.9185 9.1420 0.8089 20 7 -4.4277 10.3473 0.6162 21 14 -6.7431 8.8262 0.5628 22 1 -7.4618 9.0534 1.8424 23 1 -7.2705 9.7515 -0.4720 24 1 -6.9476 7.4228 0.1227 25 6 -2.5634 6.0113 1.8469 26 6 -1.7669 4.9181 2.1257 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.0653 2.0194 2.8000 33 1 1.3761 1.7766 3.3060 34 1 2.2436 0.4799 2.4490 35 1 -0.0837 3.1659 3.1324 36 1 1.3660 4.1949 3.0437 37 1 1.2575 6.4158 2.0808 38 1 -0.1518 8.3681 1.5715 39 1 -5.0133 11.0721 0.3466 40 1 -3.6356 5.8973 1.7850 41 1 -2.2167 3.9487 2.2814 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847166344.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:24 Heat of formation + Delta-G solvation = -7.146120 kcal Electronic energy + Delta-G solvation = -23617.051060 eV Core-core repulsion = 20077.244647 eV Total energy + Delta-G solvation = -3539.806413 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.45881 -38.94582 -37.58674 -36.44763 -35.73092 -33.56106 -32.40572 -31.26467 -30.13276 -28.60548 -27.13548 -26.17722 -25.02952 -22.34913 -21.95482 -21.02505 -19.56963 -18.22555 -17.95897 -17.47763 -16.91881 -16.25451 -15.74382 -14.76048 -14.69297 -14.46726 -14.22350 -14.02204 -13.76152 -13.73485 -13.58178 -13.30642 -13.25864 -13.08674 -12.75629 -12.68295 -12.50071 -12.31770 -12.01353 -11.84693 -11.60986 -11.50976 -11.29030 -11.24217 -10.83674 -10.74797 -10.59876 -10.41366 -9.82657 -9.30475 -9.14490 -8.80269 -8.13246 -7.14927 -6.42626 -4.01203 1.95201 2.27132 2.34760 2.39956 2.56580 3.04842 3.14341 3.15828 3.20375 3.50895 3.98819 4.35873 4.46009 4.58031 4.67982 4.83261 4.92413 5.00435 5.09768 5.15737 5.22555 5.26945 5.31916 5.35890 5.39488 5.56991 5.63812 5.64766 5.73200 5.86220 5.95913 6.09125 6.23761 6.43651 6.71374 6.92027 7.02324 7.09489 7.16562 7.26274 7.38140 7.47133 7.85660 8.02576 8.07599 9.03084 9.73684 10.75511 Molecular weight = 302.14amu Principal moments of inertia in cm(-1) A = 0.024480 B = 0.002855 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.516775 B = 9804.059528 C =10246.249647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.234 3.766 4 H 0.143 0.857 5 C 0.198 3.802 6 N -0.420 5.420 7 N -0.618 5.618 8 C 0.072 3.928 9 C 0.516 3.484 10 O -0.509 6.509 11 C -0.075 4.075 12 C -0.174 4.174 13 C -0.059 4.059 14 C -0.191 4.191 15 C 0.158 3.842 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.233 4.233 26 C -0.055 4.055 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.152 -20.727 4.123 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.127 3.873 4 H 0.160 0.840 5 C -0.121 4.121 6 N -0.097 5.097 7 N -0.355 5.355 8 C -0.071 4.071 9 C 0.305 3.695 10 O -0.381 6.381 11 C -0.115 4.115 12 C -0.175 4.175 13 C -0.077 4.077 14 C -0.211 4.211 15 C 0.104 3.896 16 O -0.081 6.081 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.252 4.252 26 C -0.073 4.073 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.576 -19.960 3.307 22.830 hybrid contribution -1.191 -0.228 -0.054 1.213 sum 9.385 -20.188 3.254 22.499 Atomic orbital electron populations 1.21711 0.93583 1.02160 1.03191 1.21852 0.97891 0.93117 1.03650 1.18500 0.81029 0.96556 0.91207 0.84009 1.29666 0.95411 0.93276 0.93796 1.81205 1.12822 1.08189 1.07452 1.47979 1.52280 1.29560 1.05705 1.21886 1.00492 0.99864 0.84818 1.21248 0.76952 0.78602 0.92674 1.90758 1.52721 1.62441 1.32216 1.20437 1.00548 0.96496 0.94012 1.18623 0.93201 0.93022 1.12680 1.20400 0.97880 0.91832 0.97614 1.20159 0.91063 0.99222 1.10629 1.19385 0.90945 0.87327 0.91974 1.83978 1.19728 1.28338 1.76079 1.21331 0.80045 0.97561 1.47784 0.89050 1.25291 1.00324 0.94578 0.96349 1.70041 1.36099 1.00490 1.43180 0.85717 0.80644 0.78659 0.78442 1.19905 1.20273 1.19165 1.21102 1.00489 0.92919 1.10684 1.20490 0.92598 0.97117 0.97097 0.92097 0.92013 0.91828 0.90675 0.89919 0.92550 0.89804 0.90742 0.88669 0.88806 0.87450 0.86575 0.92043 0.85583 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.80 37.16 0.36 -0.57 16 2 C -0.13 -0.70 5.31 -26.73 -0.14 -0.84 16 3 C 0.23 1.93 2.49 -70.72 -0.18 1.75 16 4 H 0.14 1.35 6.90 -51.93 -0.36 0.99 16 5 C 0.20 1.99 14.43 -20.76 -0.30 1.69 16 6 N -0.42 -5.24 18.54 42.16 0.78 -4.46 16 7 N -0.62 -5.34 2.19 -177.17 -0.39 -5.72 16 8 C 0.07 0.39 9.58 59.85 0.57 0.96 16 9 C 0.52 6.29 7.67 -10.99 -0.08 6.21 16 10 O -0.51 -8.52 15.36 5.55 0.09 -8.44 16 11 C -0.08 -0.85 4.38 -29.04 -0.13 -0.97 16 12 C -0.17 -2.87 4.38 -104.58 -0.46 -3.33 16 13 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 14 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 15 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 16 O -0.18 -5.14 9.76 0.05 0.00 -5.14 16 17 C -0.39 -11.01 9.49 30.89 0.29 -10.71 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 21 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.23 -5.07 9.17 -39.40 -0.36 -5.43 16 26 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 27 H 0.06 0.44 7.75 -51.93 -0.40 0.03 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.33 6.47 -51.93 -0.34 -0.01 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.33 6.44 -51.93 -0.33 -0.01 16 34 H 0.07 0.28 6.34 -51.93 -0.33 -0.05 16 35 H 0.10 0.81 7.35 -51.93 -0.38 0.43 16 36 H 0.09 0.86 8.05 -51.93 -0.42 0.45 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.13 2.75 5.64 -52.48 -0.30 2.45 16 41 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -34.70 353.80 -5.61 -40.32 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.22 Total: 1.31 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.93 Total: -14.01 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 1.15 Total: -34.95 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.70 -5.61 -40.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847166344.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.169 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds