Wall clock time and date at job start Tue Mar 31 2020 07:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.36360 * 125.84135 * 269.36821 * 3 2 1 5 5 C 1.41428 * 107.01369 * 179.97438 * 4 3 2 6 6 C 1.47369 * 126.46854 * 180.02562 * 5 4 3 7 7 O 1.21611 * 120.00274 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00030 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00084 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47257 * 34.99353 * 9 8 6 11 11 C 1.53007 * 109.47284 * 275.00053 * 9 8 6 12 12 C 1.52993 * 109.47545 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47393 * 59.99710 * 12 11 9 14 14 C 1.53007 * 109.47012 * 300.00617 * 13 12 11 15 15 H 1.09006 * 109.46824 * 299.99598 * 14 13 12 16 16 N 1.46498 * 109.46952 * 179.97438 * 14 13 12 17 17 C 1.36941 * 119.99816 * 84.99823 * 16 14 13 18 18 H 1.08001 * 120.00381 * 359.97438 * 17 16 14 19 19 C 1.38810 * 119.99780 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00229 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99905 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47020 * 90.00391 * 21 19 17 23 23 H 1.48504 * 109.46968 * 210.00234 * 21 19 17 24 24 H 1.48495 * 109.47039 * 330.00084 * 21 19 17 25 25 C 1.52993 * 109.47173 * 59.99515 * 14 13 12 26 26 C 1.38131 * 107.06421 * 0.02562 * 5 4 3 27 27 N 1.34434 * 108.38374 * 0.02562 * 26 5 4 28 28 H 0.97000 * 125.38201 * 180.02562 * 27 26 5 29 29 H 1.07997 * 126.48997 * 0.02562 * 4 3 2 30 30 H 0.96996 * 120.00155 * 359.97438 * 8 6 5 31 31 H 1.09006 * 109.46824 * 299.99956 * 11 9 8 32 32 H 1.09001 * 109.47166 * 59.99810 * 11 9 8 33 33 H 1.09006 * 109.46960 * 299.99795 * 12 11 9 34 34 H 1.08998 * 109.47525 * 180.02562 * 12 11 9 35 35 H 1.08994 * 109.47360 * 180.02562 * 13 12 11 36 36 H 1.09006 * 109.46998 * 60.00108 * 13 12 11 37 37 H 0.96993 * 120.00102 * 264.99508 * 16 14 13 38 38 H 0.97008 * 120.00273 * 179.97438 * 20 19 17 39 39 H 1.09008 * 109.46979 * 179.97438 * 25 14 13 40 40 H 1.08993 * 109.47270 * 60.00443 * 25 14 13 41 41 H 1.07997 * 125.80392 * 180.25918 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3664 0.0132 1.1053 5 6 4.7050 0.0081 0.6489 6 6 5.9166 0.0172 1.4879 7 8 5.8169 0.0308 2.6999 8 7 7.1351 0.0114 0.9121 9 6 8.3395 0.0209 1.7461 10 1 8.1591 -0.5586 2.6514 11 6 8.6867 1.4623 2.1241 12 6 9.9448 1.4724 2.9946 13 6 11.1084 0.8549 2.2164 14 6 10.7613 -0.5865 1.8383 15 1 10.5813 -1.1663 2.7437 16 7 11.8752 -1.1775 1.0927 17 6 12.9244 -1.7453 1.7650 18 1 12.9309 -1.7571 2.8449 19 6 13.9796 -2.3058 1.0585 20 7 13.9720 -2.2911 -0.2576 21 14 15.4112 -3.0798 1.9756 22 1 15.1292 -4.5189 2.2096 23 1 16.6491 -2.9432 1.1668 24 1 15.5934 -2.3926 3.2793 25 6 9.5031 -0.5965 0.9679 26 6 4.6625 -0.0069 -0.7316 27 7 3.3744 -0.0104 -1.1161 28 1 3.0624 -0.0206 -2.0345 29 1 3.0387 0.0240 2.1343 30 1 7.2147 0.0009 -0.0546 31 1 8.8670 2.0420 1.2188 32 1 7.8576 1.9024 2.6782 33 1 9.7649 0.8926 3.9000 34 1 10.1919 2.4992 3.2643 35 1 12.0046 0.8617 2.8367 36 1 11.2884 1.4347 1.3110 37 1 11.8695 -1.1667 0.1228 38 1 14.7096 -2.6825 -0.7513 39 1 9.2561 -1.6234 0.6982 40 1 9.6830 -0.0168 0.0626 41 1 5.5186 -0.0180 -1.3900 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981020708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:06 Heat of formation + Delta-G solvation = 11.642796 kcal Electronic energy + Delta-G solvation = -23318.380779 eV Core-core repulsion = 19811.681866 eV Total energy + Delta-G solvation = -3506.698913 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.45861 -40.63176 -39.00056 -37.59764 -36.13550 -34.73608 -32.91622 -32.47122 -31.24043 -30.12124 -29.18731 -25.67294 -24.61087 -23.53108 -23.07266 -22.05538 -21.09471 -20.99092 -20.25186 -19.03389 -17.47788 -17.32285 -16.74960 -16.30736 -16.20306 -15.80449 -15.46131 -15.32109 -15.20104 -14.97351 -14.89076 -14.59441 -14.21351 -14.09296 -13.99916 -13.67718 -13.49133 -13.33735 -13.19896 -12.84806 -12.79800 -12.19853 -12.07767 -11.96209 -11.90501 -11.56352 -11.42859 -11.29327 -10.83971 -10.78948 -10.21889 -9.88265 -9.36078 -8.94112 -7.90194 -5.16819 0.37766 0.83589 1.23833 1.50303 1.50749 1.58979 2.12390 2.29905 2.30576 2.60311 2.64802 3.07467 3.43385 3.73692 3.87779 3.97866 4.13332 4.16406 4.25025 4.36229 4.41228 4.51299 4.63145 4.67602 4.71927 4.79768 4.86617 4.95878 5.12064 5.24352 5.27715 5.31742 5.42377 5.45075 5.56008 5.58917 5.60442 5.63972 5.75526 6.26198 6.33378 6.42357 6.79958 7.39821 7.46634 8.16732 8.40329 9.33014 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.027941 B = 0.002478 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.858465 B =11295.108975 C =11826.343549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.303 3.697 3 C 0.038 3.962 4 C -0.059 4.059 5 C -0.256 4.256 6 C 0.587 3.413 7 O -0.592 6.592 8 N -0.707 5.707 9 C 0.160 3.840 10 H 0.065 0.935 11 C -0.116 4.116 12 C -0.108 4.108 13 C -0.126 4.126 14 C 0.175 3.825 15 H 0.033 0.967 16 N -0.735 5.735 17 C -0.234 4.234 18 H 0.070 0.930 19 C -0.075 4.075 20 N -0.967 5.967 21 Si 0.966 3.034 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.273 1.273 25 C -0.113 4.113 26 C 0.129 3.871 27 N -0.499 5.499 28 H 0.446 0.554 29 H 0.149 0.851 30 H 0.415 0.585 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.832 8.173 -5.096 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.011 4.011 3 C -0.074 4.074 4 C -0.087 4.087 5 C -0.265 4.265 6 C 0.377 3.623 7 O -0.473 6.473 8 N -0.358 5.358 9 C 0.055 3.945 10 H 0.083 0.917 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.166 4.166 14 C 0.066 3.934 15 H 0.051 0.949 16 N -0.374 5.374 17 C -0.366 4.366 18 H 0.088 0.912 19 C -0.267 4.267 20 N -0.618 5.618 21 Si 0.795 3.205 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.198 1.198 25 C -0.152 4.152 26 C -0.015 4.015 27 N -0.094 5.094 28 H 0.288 0.712 29 H 0.167 0.833 30 H 0.252 0.748 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -21.664 8.108 -4.267 23.522 hybrid contribution 1.380 -0.628 -0.461 1.585 sum -20.283 7.480 -4.728 22.130 Atomic orbital electron populations 1.81363 1.12567 1.12120 1.06764 1.24383 0.90905 0.92102 0.93734 1.14876 0.82484 1.21932 0.88097 1.21134 0.91059 0.98454 0.98066 1.19449 0.92534 1.20807 0.93716 1.17719 0.83110 0.74699 0.86819 1.90771 1.87478 1.52767 1.16324 1.45713 1.04290 1.74887 1.10918 1.20690 0.83383 0.96627 0.93807 0.91705 1.21808 0.97134 0.95998 1.00472 1.21419 0.94149 1.00985 0.98112 1.22095 0.97442 0.97520 0.99583 1.20332 0.86858 0.92376 0.93819 0.94875 1.42561 1.20504 1.68891 1.05466 1.19568 0.97741 1.27970 0.91327 0.91159 1.25450 1.01523 1.03452 0.96316 1.69787 1.33636 1.52429 1.05956 0.85251 0.79176 0.78311 0.77722 1.21637 1.22282 1.19790 1.21857 0.93109 1.01136 0.99074 1.23122 0.87321 0.96631 0.94462 1.41570 1.05133 1.53821 1.08914 0.71173 0.83342 0.74786 0.90376 0.92148 0.92691 0.90848 0.94414 0.92565 0.79299 0.94137 0.91830 0.90124 0.74983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.35 18.54 19.00 0.35 -9.00 16 2 C 0.30 4.68 15.88 88.33 1.40 6.08 16 3 C 0.04 0.42 6.90 39.03 0.27 0.69 16 4 C -0.06 -0.90 10.59 22.62 0.24 -0.66 16 5 C -0.26 -3.65 6.13 -20.11 -0.12 -3.78 16 6 C 0.59 12.75 7.78 86.65 0.67 13.42 16 7 O -0.59 -18.77 16.58 -4.06 -0.07 -18.84 16 8 N -0.71 -12.54 5.07 -445.85 -2.26 -14.79 16 9 C 0.16 3.87 2.46 44.99 0.11 3.98 16 10 H 0.06 1.92 7.58 -2.39 -0.02 1.90 16 11 C -0.12 -2.66 5.49 30.59 0.17 -2.49 16 12 C -0.11 -2.81 5.92 30.59 0.18 -2.63 16 13 C -0.13 -4.17 5.50 30.60 0.17 -4.00 16 14 C 0.17 6.44 2.77 44.99 0.12 6.57 16 15 H 0.03 1.32 8.08 -2.38 -0.02 1.30 16 16 N -0.73 -35.12 5.12 -322.93 -1.65 -36.78 16 17 C -0.23 -12.68 9.93 84.03 0.83 -11.85 16 18 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 19 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 20 N -0.97 -57.45 13.06 21.65 0.28 -57.17 16 21 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 25 C -0.11 -3.11 4.86 30.59 0.15 -2.97 16 26 C 0.13 0.55 11.43 84.27 0.96 1.51 16 27 N -0.50 -1.80 6.02 -186.47 -1.12 -2.93 16 28 H 0.45 -1.40 8.96 -92.71 -0.83 -2.23 16 29 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.41 4.06 7.51 -92.71 -0.70 3.36 16 31 H 0.08 1.56 8.14 -2.38 -0.02 1.55 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.37 18.92 7.80 -92.71 -0.72 18.19 16 38 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 39 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.23 -1.14 7.44 -2.91 -0.02 -1.16 16 Total: -1.00 -77.12 353.09 2.03 -75.10 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -1.16 Total: 16.65 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 5.63 Total: 0.11 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -4.40 Total: -120.66 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.07 Total: -18.84 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -77.12 2.03 -75.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981020708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.740 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds