Wall clock time and date at job start Tue Mar 31 2020 08:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81397 * 103.00242 * 2 1 4 4 H 1.09002 * 109.47214 * 54.99613 * 3 2 1 5 5 C 1.53003 * 109.47348 * 295.00107 * 3 2 1 6 6 O 1.42898 * 109.47078 * 294.99890 * 5 3 2 7 7 C 1.53001 * 109.47381 * 174.99903 * 3 2 1 8 8 H 1.08998 * 109.46944 * 60.00151 * 7 3 2 9 9 C 1.52995 * 109.46935 * 300.00169 * 7 3 2 10 10 N 1.46500 * 109.47096 * 180.02562 * 7 3 2 11 11 C 1.34782 * 119.99756 * 205.00338 * 10 7 3 12 12 O 1.21585 * 119.99749 * 359.97438 * 11 10 7 13 13 N 1.34774 * 119.99884 * 180.02562 * 11 10 7 14 14 C 1.46496 * 119.99995 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47336 * 178.27779 * 14 13 11 16 16 C 1.50699 * 115.55054 * 65.14024 * 15 14 13 17 17 H 1.08005 * 119.99897 * 265.41235 * 16 15 14 18 18 C 1.37879 * 120.00015 * 85.40462 * 16 15 14 19 19 N 1.31504 * 120.00157 * 353.55545 * 18 16 15 20 20 Si 1.86799 * 119.99873 * 173.55554 * 18 16 15 21 21 H 1.48498 * 109.47466 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47235 * 119.99911 * 20 18 16 23 23 H 1.48494 * 109.47445 * 239.99955 * 20 18 16 24 24 C 1.52999 * 117.49959 * 279.46967 * 15 14 13 25 25 C 1.52993 * 117.49920 * 210.80926 * 15 14 13 26 26 H 1.09011 * 109.46684 * 59.99881 * 1 2 3 27 27 H 1.08995 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47134 * 300.00045 * 1 2 3 29 29 H 1.08995 * 109.47280 * 174.99888 * 5 3 2 30 30 H 1.09000 * 109.47124 * 55.00017 * 5 3 2 31 31 H 0.96695 * 114.00298 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.47156 * 179.97438 * 9 7 3 33 33 H 1.08998 * 109.47290 * 299.99770 * 9 7 3 34 34 H 1.08998 * 109.47191 * 60.00058 * 9 7 3 35 35 H 0.97002 * 120.00136 * 24.99955 * 10 7 3 36 36 H 0.97002 * 120.00008 * 359.97438 * 13 11 10 37 37 H 1.09003 * 109.46935 * 298.27631 * 14 13 11 38 38 H 1.08998 * 109.47194 * 58.27354 * 14 13 11 39 39 H 0.97001 * 120.00676 * 185.05464 * 19 18 16 40 40 H 1.09007 * 117.49813 * 0.02562 * 24 15 14 41 41 H 1.09002 * 117.49843 * 145.01448 * 24 15 14 42 42 H 1.09005 * 117.49883 * 214.97648 * 25 15 14 43 43 H 1.09000 * 117.50532 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7429 2.4016 -1.3073 6 8 2.4730 1.8451 -2.4024 7 6 3.7371 1.9411 0.1257 8 1 4.2296 1.4545 -0.7161 9 6 4.2163 1.3071 1.4331 10 7 4.0666 3.3686 0.1264 11 6 5.2868 3.7787 -0.2728 12 8 6.1143 2.9638 -0.6329 13 7 5.5902 5.0919 -0.2718 14 6 6.9167 5.5376 -0.7051 15 6 6.9850 7.0650 -0.6492 16 6 6.8750 7.6706 0.7264 17 1 5.9154 8.0009 1.0958 18 6 7.9995 7.8029 1.5133 19 7 9.1429 7.2875 1.1182 20 14 7.8985 8.7143 3.1408 21 1 6.5096 9.1945 3.3539 22 1 8.2799 7.7982 4.2456 23 1 8.8255 9.8740 3.1171 24 6 6.3706 7.8428 -1.8147 25 6 7.8917 7.7691 -1.6605 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.9077 3.4784 -1.2707 30 1 0.6798 2.2011 -1.4401 31 1 2.2212 2.2021 -3.2650 32 1 5.2956 1.4304 1.5225 33 1 3.7237 1.7937 2.2749 34 1 3.9711 0.2450 1.4330 35 1 3.4065 4.0186 0.4140 36 1 4.9301 5.7419 0.0159 37 1 7.6751 5.1156 -0.0456 38 1 7.0967 5.2029 -1.7267 39 1 9.9159 7.3161 1.7035 40 1 5.9173 7.2663 -2.6211 41 1 5.8871 8.7927 -1.5866 42 1 8.4084 8.6706 -1.3311 43 1 8.4400 7.1442 -2.3656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430855152.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:33 Heat of formation + Delta-G solvation = -82.925157 kcal Electronic energy + Delta-G solvation = -23097.418000 eV Core-core repulsion = 19689.769513 eV Total energy + Delta-G solvation = -3407.648487 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 302.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.08972 -38.88601 -38.21215 -36.43507 -34.94127 -33.95885 -32.51293 -30.61964 -29.23406 -27.99168 -26.96101 -24.54071 -22.99888 -22.40755 -21.64632 -21.20747 -19.43669 -18.57368 -18.09002 -17.18772 -17.08166 -16.64166 -16.35090 -15.91614 -15.87302 -15.68057 -15.31998 -14.95201 -14.46835 -14.32476 -14.17933 -13.99893 -13.66767 -13.54694 -13.45683 -13.17036 -12.92207 -12.87996 -12.81673 -12.33199 -12.31431 -12.08609 -12.02494 -11.49137 -11.25191 -10.97622 -10.83546 -10.66338 -10.45397 -10.26667 -10.02631 -9.58814 -8.56392 -8.07984 -6.21164 0.57979 1.42054 1.45573 1.54696 1.65847 1.93013 2.29934 2.43687 3.20359 3.25276 3.37837 3.53268 3.65663 3.79596 4.19524 4.27221 4.31482 4.39667 4.40950 4.52716 4.53632 4.58673 4.61100 4.67948 4.76136 4.78308 4.95683 4.96485 5.01657 5.10526 5.25834 5.29319 5.56716 5.61212 5.63649 5.74044 5.80911 6.16897 6.38688 6.86262 6.91032 7.27813 7.48316 7.73614 8.99750 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.021529 B = 0.003341 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.270054 B = 8378.195871 C = 8929.284738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.271 6.271 3 C -0.058 4.058 4 H 0.128 0.872 5 C 0.081 3.919 6 O -0.579 6.579 7 C 0.192 3.808 8 H 0.066 0.934 9 C -0.160 4.160 10 N -0.723 5.723 11 C 0.700 3.300 12 O -0.645 6.645 13 N -0.714 5.714 14 C 0.201 3.799 15 C 0.007 3.993 16 C -0.502 4.502 17 H 0.066 0.934 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.259 1.259 22 H -0.289 1.289 23 H -0.286 1.286 24 C -0.173 4.173 25 C -0.161 4.161 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.393 0.607 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.408 0.592 36 H 0.407 0.593 37 H 0.023 0.977 38 H 0.029 0.971 39 H 0.258 0.742 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.856 -8.748 -2.314 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.045 6.045 3 C -0.187 4.187 4 H 0.145 0.855 5 C 0.002 3.998 6 O -0.386 6.386 7 C 0.086 3.914 8 H 0.084 0.916 9 C -0.219 4.219 10 N -0.380 5.380 11 C 0.400 3.600 12 O -0.527 6.527 13 N -0.367 5.367 14 C 0.076 3.924 15 C 0.006 3.994 16 C -0.539 4.539 17 H 0.084 0.916 18 C -0.178 4.178 19 N -0.546 5.546 20 Si 0.777 3.223 21 H -0.183 1.183 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.211 4.211 25 C -0.199 4.199 26 H 0.104 0.896 27 H 0.129 0.871 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.242 0.758 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.245 0.755 36 H 0.242 0.758 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.082 0.918 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.953 -10.648 -2.132 22.716 hybrid contribution -0.731 2.244 0.687 2.459 sum -20.684 -8.404 -1.445 22.373 Atomic orbital electron populations 1.23523 0.91500 1.07516 1.05928 1.87237 1.10041 1.09414 1.97838 1.23536 0.97961 0.95859 1.01317 0.85452 1.22277 0.95022 0.96744 0.85784 1.86576 1.65371 1.68399 1.18287 1.20184 0.92438 0.80219 0.98553 0.91603 1.22231 1.00482 1.01858 0.97315 1.44849 1.13396 1.08283 1.71457 1.16123 0.82832 0.82739 0.78329 1.90853 1.50353 1.54203 1.57280 1.44863 1.16688 1.04989 1.70149 1.20363 0.82124 0.94541 0.95369 1.19042 1.01104 0.88608 0.90616 1.20691 0.93899 1.40020 0.99336 0.91611 1.25722 0.95139 0.95868 1.01027 1.70113 1.01781 1.45455 1.37274 0.85631 0.78530 0.78284 0.79901 1.18291 1.21598 1.21211 1.22998 0.94852 1.02225 1.00976 1.22434 0.92456 1.02207 1.02837 0.89634 0.87113 0.89029 0.91800 0.91302 0.75791 0.94894 0.90687 0.90216 0.75510 0.75798 0.95892 0.95222 0.93310 0.89365 0.89380 0.91769 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.45 113.37 1.18 0.01 16 2 S -0.27 -5.18 20.10 -56.49 -1.14 -6.31 16 3 C -0.06 -1.03 2.28 30.60 0.07 -0.96 16 4 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 5 C 0.08 1.24 6.35 71.98 0.46 1.70 16 6 O -0.58 -11.93 12.53 -148.98 -1.87 -13.80 16 7 C 0.19 5.10 1.96 44.99 0.09 5.19 16 8 H 0.07 2.33 6.99 -2.39 -0.02 2.31 16 9 C -0.16 -4.27 9.24 71.98 0.67 -3.60 16 10 N -0.72 -19.78 4.47 -457.82 -2.04 -21.82 16 11 C 0.70 27.18 8.53 179.05 1.53 28.71 16 12 O -0.64 -31.59 16.01 -3.98 -0.06 -31.65 16 13 N -0.71 -27.62 5.48 -478.55 -2.62 -30.24 16 14 C 0.20 9.43 5.50 86.38 0.48 9.90 16 15 C 0.01 0.33 1.38 -52.93 -0.07 0.26 16 16 C -0.50 -25.32 8.63 25.60 0.22 -25.10 16 17 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 18 C 0.02 1.22 5.39 84.66 0.46 1.68 16 19 N -0.91 -51.79 12.91 21.45 0.28 -51.52 16 20 Si 0.95 42.04 29.55 68.60 2.03 44.06 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 24 C -0.17 -6.76 9.96 30.62 0.30 -6.46 16 25 C -0.16 -7.34 9.42 30.62 0.29 -7.05 16 26 H 0.08 0.71 7.02 -2.38 -0.02 0.69 16 27 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.88 7.61 -2.39 -0.02 0.86 16 30 H 0.07 0.71 6.72 -2.39 -0.02 0.69 16 31 H 0.39 4.85 9.12 -74.06 -0.68 4.18 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.99 6.91 -2.39 -0.02 1.97 16 35 H 0.41 8.09 8.42 -92.71 -0.78 7.31 16 36 H 0.41 13.58 8.38 -92.71 -0.78 12.80 16 37 H 0.02 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.03 1.39 8.09 -2.39 -0.02 1.38 16 39 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 40 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 41 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.06 3.14 8.14 -2.38 -0.02 3.12 16 43 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -71.98 368.27 -0.97 -72.95 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -1.20 Total: 34.06 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 5.66 Total: 4.28 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -4.39 Total: -103.58 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.93 Total: -45.46 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.14 Total: -6.31 kcal Total: -71.98 -0.97 -72.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430855152.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.980 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds