Wall clock time and date at job start Tue Mar 31 2020 08:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46955 * 2 1 4 4 O 1.42905 * 109.46996 * 240.00116 * 2 1 3 5 5 C 1.42899 * 113.99778 * 90.00183 * 4 2 1 6 6 C 1.52999 * 109.46889 * 179.97438 * 5 4 2 7 7 H 1.09001 * 110.27313 * 54.29789 * 6 5 4 8 8 C 1.54946 * 110.30943 * 176.38777 * 6 5 4 9 9 C 1.55412 * 100.89444 * 155.29056 * 8 6 5 10 10 C 1.54388 * 102.30959 * 325.99044 * 9 8 6 11 11 O 1.43238 * 107.58484 * 21.28792 * 10 9 8 12 12 C 1.50704 * 109.47224 * 120.00260 * 2 1 3 13 13 O 1.20821 * 120.00020 * 120.00132 * 12 2 1 14 14 O 1.34229 * 119.99495 * 300.00224 * 12 2 1 15 15 C 1.45202 * 116.99487 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47034 * 179.97438 * 15 14 12 17 17 O 1.42892 * 109.46888 * 65.00044 * 16 15 14 18 18 C 1.42906 * 113.99991 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47212 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99932 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00085 * 180.02562 * 19 18 17 22 22 N 1.31521 * 120.00028 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00213 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47290 * 60.00004 * 23 21 19 25 25 H 1.48506 * 109.47495 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47317 * 299.99915 * 23 21 19 27 27 H 1.08992 * 109.47123 * 299.99347 * 1 2 3 28 28 H 1.09000 * 109.47214 * 60.00216 * 1 2 3 29 29 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 5 4 2 31 31 H 1.08997 * 109.47442 * 59.99964 * 5 4 2 32 32 H 1.09005 * 111.12828 * 273.27974 * 8 6 5 33 33 H 1.09004 * 111.12352 * 37.44286 * 8 6 5 34 34 H 1.09001 * 110.88448 * 207.75568 * 9 8 6 35 35 H 1.08993 * 110.93599 * 84.25235 * 9 8 6 36 36 H 1.08995 * 109.82841 * 261.77497 * 10 9 8 37 37 H 1.09000 * 109.90643 * 140.84195 * 10 9 8 38 38 H 1.08999 * 109.47592 * 300.00110 * 15 14 12 39 39 H 1.09004 * 109.46981 * 59.99992 * 15 14 12 40 40 H 1.09001 * 109.46721 * 185.00011 * 16 15 14 41 41 H 1.09000 * 109.47075 * 305.00274 * 16 15 14 42 42 H 1.08998 * 109.46822 * 299.99862 * 18 17 16 43 43 H 1.08993 * 109.46769 * 59.99674 * 18 17 16 44 44 H 0.96993 * 119.99933 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7090 -0.6405 -3.4788 7 1 2.0363 -1.4753 -3.6753 8 6 2.8397 0.2528 -4.7381 9 6 3.9142 -0.5298 -5.5432 10 6 4.8090 -1.1056 -4.4246 11 8 4.0373 -1.1213 -3.2181 12 6 2.0324 -0.7105 1.2305 13 8 2.7270 -1.6928 1.1195 14 8 1.7080 -0.2519 2.4496 15 6 2.2267 -0.9865 3.5896 16 6 1.7557 -0.3192 4.8834 17 8 0.3340 -0.4225 4.9823 18 6 -0.2115 0.1732 6.1612 19 6 -1.7092 0.0060 6.1617 20 1 -2.1959 -0.5038 5.3434 21 6 -2.4582 0.5047 7.2062 22 7 -1.8656 1.1260 8.2025 23 14 -4.3146 0.2981 7.2065 24 1 -4.6518 -1.1479 7.1817 25 1 -4.8815 0.9170 8.4317 26 1 -4.8866 0.9603 6.0068 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.2538 0.6547 -2.5588 31 1 2.9319 0.9513 -2.0450 32 1 1.8973 0.3031 -5.2836 33 1 3.1942 1.2500 -4.4773 34 1 4.4822 0.1412 -6.1876 35 1 3.4581 -1.3302 -6.1257 36 1 5.6882 -0.4749 -4.2931 37 1 5.1164 -2.1197 -4.6802 38 1 1.8626 -2.0133 3.5565 39 1 3.3163 -0.9862 3.5568 40 1 2.2164 -0.8164 5.7371 41 1 2.0440 0.7319 4.8759 42 1 0.2083 -0.3133 7.0416 43 1 0.0361 1.2345 6.1798 44 1 -2.3924 1.4765 8.9376 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815197821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:23 Heat of formation + Delta-G solvation = -229.906806 kcal Electronic energy + Delta-G solvation = -24386.421819 eV Core-core repulsion = 20497.354107 eV Total energy + Delta-G solvation = -3889.067712 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.165 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44496 -39.82375 -38.08747 -36.89603 -35.88192 -32.80496 -32.65410 -32.27375 -30.55859 -29.81495 -26.94415 -26.00409 -24.65342 -22.48708 -22.19165 -21.98493 -21.67466 -20.69619 -17.79825 -17.33798 -17.12647 -16.72970 -16.40893 -16.26394 -15.98940 -15.50653 -15.25981 -14.71900 -14.69122 -14.26153 -14.07190 -13.68580 -13.55739 -13.17731 -12.75901 -12.62635 -12.37047 -12.34324 -12.17990 -11.94925 -11.80625 -11.56354 -11.43527 -11.39430 -11.22565 -10.92397 -10.83636 -10.73673 -10.35263 -10.29685 -10.06494 -9.82820 -9.78963 -9.13983 -8.86791 -8.20876 -6.11749 -4.13495 2.28661 2.42529 3.32119 3.34706 3.38659 3.39638 3.58927 4.01194 4.32522 4.39125 4.47366 4.58884 4.70849 4.71600 4.78442 4.80621 4.88518 4.91182 5.05240 5.10902 5.22414 5.24635 5.26640 5.33350 5.42120 5.49292 5.50064 5.55526 5.60480 5.69978 5.88576 5.94161 6.08107 6.11439 6.62407 6.67607 6.83523 7.05948 7.40144 7.77929 7.93383 8.12804 8.52907 8.98820 9.51135 10.99716 Molecular weight = 302.17amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.002227 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.036836 B =12570.714111 C =13286.179694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 H 0.098 0.902 4 O -0.352 6.352 5 C 0.062 3.938 6 C 0.084 3.916 7 H 0.081 0.919 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.367 6.367 12 C 0.459 3.541 13 O -0.493 6.493 14 O -0.339 6.339 15 C 0.075 3.925 16 C 0.062 3.938 17 O -0.391 6.391 18 C 0.194 3.806 19 C -0.515 4.515 20 H 0.066 0.934 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.909 3.091 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.006 0.994 43 H 0.007 0.993 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.008 0.799 -26.115 28.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.041 3.959 3 H 0.116 0.884 4 O -0.271 6.271 5 C -0.015 4.015 6 C 0.026 3.974 7 H 0.099 0.901 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.030 4.030 11 O -0.287 6.287 12 C 0.300 3.700 13 O -0.379 6.379 14 O -0.255 6.255 15 C 0.002 3.998 16 C -0.015 4.015 17 O -0.310 6.310 18 C 0.120 3.880 19 C -0.553 4.553 20 H 0.084 0.916 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.736 3.264 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.181 0.226 -25.867 28.181 hybrid contribution -0.724 0.305 0.196 0.809 sum 10.458 0.531 -25.671 27.725 Atomic orbital electron populations 1.22245 0.92114 1.04314 1.04143 1.21386 0.95763 0.95742 0.83041 0.88412 1.88064 1.86640 1.33802 1.18590 1.22799 0.99765 0.92882 0.86054 1.22974 0.85821 0.96014 0.92568 0.90079 1.23272 1.00315 0.99607 0.95528 1.23132 0.97381 1.00356 0.98402 1.23152 0.94665 1.00930 0.84247 1.88585 1.22652 1.86432 1.31003 1.23284 0.78027 0.83464 0.85223 1.90671 1.34775 1.25241 1.87243 1.86559 1.69542 1.55221 1.14225 1.23237 0.97900 0.96403 0.82304 1.22322 0.86275 0.99531 0.93409 1.87917 1.16385 1.80349 1.46397 1.20233 0.94102 0.92213 0.81436 1.21006 0.90635 1.37000 1.06667 0.91553 1.24953 0.99484 0.95025 0.95079 1.69952 1.36119 1.37868 1.09850 0.86377 0.84060 0.78546 0.77377 1.20014 1.21171 1.19994 0.89138 0.91129 0.90996 0.91376 0.92199 0.89353 0.89953 0.89832 0.90325 0.91326 0.91333 0.90408 0.90387 0.91886 0.93179 0.97612 0.97492 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.46 37.16 0.35 -1.56 16 2 C 0.10 1.25 3.24 -27.88 -0.09 1.16 16 3 H 0.10 0.96 7.79 -51.93 -0.40 0.56 16 4 O -0.35 -4.72 9.52 -57.87 -0.55 -5.27 16 5 C 0.06 0.57 5.45 37.16 0.20 0.77 16 6 C 0.08 0.75 3.72 -25.70 -0.10 0.65 16 7 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 8 C -0.15 -0.82 6.58 -24.42 -0.16 -0.98 16 9 C -0.16 -0.80 7.02 -24.72 -0.17 -0.98 16 10 C 0.05 0.36 7.80 37.88 0.30 0.65 16 11 O -0.37 -4.31 11.04 -35.96 -0.40 -4.71 16 12 C 0.46 7.51 7.33 36.01 0.26 7.77 16 13 O -0.49 -9.48 16.25 -25.47 -0.41 -9.89 16 14 O -0.34 -5.83 10.09 -42.02 -0.42 -6.26 16 15 C 0.08 1.24 5.84 37.16 0.22 1.46 16 16 C 0.06 1.15 6.33 37.16 0.24 1.39 16 17 O -0.39 -9.49 10.30 -38.80 -0.40 -9.89 16 18 C 0.19 5.32 5.69 36.01 0.20 5.52 16 19 C -0.51 -15.17 9.43 -34.44 -0.32 -15.49 16 20 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 23 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 28 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 29 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.07 0.44 7.87 -51.93 -0.41 0.04 16 31 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 39 H 0.08 1.10 8.13 -51.93 -0.42 0.67 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -35.73 374.43 -7.52 -43.25 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -7.52 Total: -5.51 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 0.83 Total: 1.89 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -2.19 Total: -36.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.73 -7.52 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815197821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.654 kcal (2) G-P(sol) polarization free energy of solvation -35.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds