Wall clock time and date at job start Tue Mar 31 2020 08:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.50064 * 2 1 4 4 C 1.53193 * 109.49552 * 120.06071 * 2 1 3 5 5 N 1.46932 * 108.77537 * 174.58995 * 4 2 1 6 6 C 1.34773 * 120.63180 * 126.36829 * 5 4 2 7 7 O 1.21680 * 120.00212 * 353.22701 * 6 5 4 8 8 C 1.46793 * 119.99685 * 173.22502 * 6 5 4 9 9 C 1.36408 * 125.84681 * 155.63346 * 8 6 5 10 10 C 1.41280 * 107.03204 * 179.85115 * 9 8 6 11 11 C 1.43198 * 126.45374 * 180.15865 * 10 9 8 12 12 N 9.31625 * 158.84746 * 84.45556 * 2 1 3 13 13 C 1.38181 * 107.08981 * 0.41361 * 10 9 8 14 14 N 1.34418 * 108.38647 * 359.74540 * 13 10 9 15 15 H 0.97000 * 125.40633 * 180.02562 * 14 13 10 16 16 C 1.46929 * 118.73634 * 306.38828 * 5 4 2 17 17 C 1.53201 * 108.77300 * 53.60834 * 16 5 4 18 18 C 1.53029 * 109.49945 * 239.90003 * 2 1 3 19 19 H 1.09001 * 109.46341 * 298.70399 * 18 2 1 20 20 N 1.46504 * 109.46369 * 58.65991 * 18 2 1 21 21 C 1.36932 * 120.00227 * 205.06786 * 20 18 2 22 22 H 1.07996 * 120.00066 * 0.02562 * 21 20 18 23 23 C 1.38821 * 119.99702 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99471 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99984 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46978 * 90.00336 * 25 23 21 27 27 H 1.48502 * 109.47115 * 210.00160 * 25 23 21 28 28 H 1.48497 * 109.47287 * 330.00395 * 25 23 21 29 29 H 1.09005 * 109.47300 * 299.94171 * 1 2 3 30 30 H 1.08999 * 109.47056 * 59.93959 * 1 2 3 31 31 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08989 * 109.59084 * 54.80232 * 4 2 1 33 33 H 1.09004 * 109.58924 * 294.36887 * 4 2 1 34 34 H 1.07999 * 126.48342 * 0.02562 * 9 8 6 35 35 H 1.08004 * 125.80401 * 179.74844 * 13 10 9 36 36 H 1.08993 * 109.58912 * 293.82394 * 16 5 4 37 37 H 1.08997 * 109.58833 * 173.39429 * 16 5 4 38 38 H 1.09004 * 109.49274 * 65.31730 * 17 16 5 39 39 H 1.08992 * 109.49560 * 185.41056 * 17 16 5 40 40 H 0.97005 * 119.99436 * 25.07145 * 20 18 2 41 41 H 0.97005 * 119.99495 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 1.2499 5 7 3.5046 -0.8287 1.1700 6 6 4.2810 -0.3848 2.1781 7 8 3.7826 0.2190 3.1096 8 6 5.7282 -0.6297 2.1525 9 6 6.6752 0.1108 2.7970 10 6 7.9275 -0.4746 2.5052 11 6 9.2050 -0.0288 2.9741 12 7 10.2185 0.3248 3.3461 13 6 7.6879 -1.5547 1.6774 14 7 6.3629 -1.6432 1.4686 15 1 5.9235 -2.3143 0.9233 16 6 4.1053 -1.4267 -0.0302 17 6 3.5708 -0.6954 -1.2657 18 6 2.0408 -0.7234 -1.2480 19 1 1.6967 -1.7576 -1.2347 20 7 1.5265 -0.0538 -2.4453 21 6 1.3951 -0.7508 -3.6166 22 1 1.6703 -1.7944 -3.6577 23 6 0.9083 -0.1161 -4.7511 24 7 0.7816 -0.7862 -5.8768 25 14 0.4317 1.6887 -4.6797 26 1 1.6103 2.5257 -5.0200 27 1 -0.6594 1.9514 -5.6522 28 1 -0.0344 2.0238 -3.3102 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6053 -1.7211 1.2987 33 1 1.7637 -0.1571 2.1390 34 1 6.5006 0.9785 3.4159 35 1 8.4376 -2.2154 1.2678 36 1 3.8376 -2.4818 -0.0858 37 1 5.1895 -1.3246 0.0143 38 1 3.9159 0.3385 -1.2541 39 1 3.9334 -1.1904 -2.1665 40 1 1.2790 0.8834 -2.4082 41 1 0.4418 -0.3426 -6.6697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035971663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:16 Heat of formation + Delta-G solvation = 66.461370 kcal Electronic energy + Delta-G solvation = -24269.603912 eV Core-core repulsion = 20765.282110 eV Total energy + Delta-G solvation = -3504.321801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 302.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11195 -39.85662 -37.84778 -36.61434 -34.99121 -33.15816 -31.88741 -31.67012 -30.27577 -29.80987 -26.75579 -25.46483 -23.39142 -23.06873 -22.09054 -21.59225 -20.65582 -19.91931 -18.38707 -17.59054 -17.01151 -16.33091 -15.94140 -15.67606 -15.06236 -14.63107 -14.47973 -14.16778 -14.00731 -13.81142 -13.60241 -13.46330 -13.36315 -13.12374 -12.99367 -12.59411 -12.51719 -12.22432 -12.03563 -11.89678 -11.53034 -11.16900 -11.01382 -10.83026 -10.64476 -10.32315 -10.21163 -9.90400 -9.67960 -9.48761 -9.03109 -8.89741 -8.63796 -7.38132 -5.87231 -3.23248 1.08823 1.46872 2.39968 2.56997 2.73439 3.05837 3.30253 3.33646 3.39518 3.41281 3.86319 4.28689 4.50182 4.51612 4.63778 4.80025 4.92307 5.00081 5.02827 5.14049 5.28237 5.30768 5.48747 5.52821 5.55767 5.69443 5.82851 5.87838 5.95544 6.02549 6.10474 6.15956 6.20544 6.31798 6.36288 6.56100 6.63545 6.73791 6.80418 7.19654 7.40962 7.87100 7.91637 8.31749 9.09563 9.82527 10.01941 11.30828 Molecular weight = 302.15amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.003416 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.404661 B = 8194.906626 C = 8851.229801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.605 5.605 6 C 0.587 3.413 7 O -0.529 6.529 8 C -0.039 4.039 9 C -0.062 4.062 10 C -0.135 4.135 11 C 0.292 3.708 12 N -0.438 5.438 13 C 0.090 3.910 14 N -0.524 5.524 15 H 0.431 0.569 16 C 0.089 3.911 17 C -0.151 4.151 18 C 0.189 3.811 19 H 0.057 0.943 20 N -0.744 5.744 21 C -0.245 4.245 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.932 5.932 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.189 0.811 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.362 0.638 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 -4.038 15.128 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.338 5.338 6 C 0.375 3.625 7 O -0.405 6.405 8 C -0.150 4.150 9 C -0.089 4.089 10 C -0.145 4.145 11 C -0.023 4.023 12 N -0.114 5.114 13 C -0.054 4.054 14 N -0.123 5.123 15 H 0.276 0.724 16 C -0.035 4.035 17 C -0.192 4.192 18 C 0.079 3.921 19 H 0.075 0.925 20 N -0.386 5.386 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.579 5.579 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.176 0.824 35 H 0.205 0.795 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.195 0.805 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.693 -3.453 15.907 18.945 hybrid contribution -0.825 0.836 -0.761 1.399 sum 8.869 -2.617 15.146 17.746 Atomic orbital electron populations 1.21674 0.93977 1.02181 1.01740 1.21797 0.96730 1.00195 0.94736 0.91117 1.21754 0.77586 1.01157 0.99510 1.48094 1.07531 1.60521 1.17638 1.17071 0.83876 0.79120 0.82393 1.90846 1.73451 1.41033 1.35195 1.20050 0.93029 0.96286 1.05623 1.21020 0.88776 0.99807 0.99319 1.15387 0.87456 1.02073 1.09587 1.24650 0.91730 0.93127 0.92790 1.81276 1.11106 1.08912 1.10155 1.22341 0.85353 0.98761 0.98924 1.42594 1.06716 1.25079 1.37943 0.72439 1.22279 0.97718 0.97958 0.85554 1.22652 1.00213 1.00636 0.95703 1.20155 0.90266 0.96109 0.85556 0.92474 1.42764 1.78014 1.10224 1.07593 1.19019 1.36806 0.95728 0.85955 0.89232 1.24666 1.01167 0.97469 0.95618 1.69694 1.51871 1.35716 1.00667 0.86591 0.78278 0.86727 0.77123 1.21125 1.21747 1.20255 0.93448 0.91329 0.92542 0.91046 0.88896 0.82369 0.79450 0.90791 0.90248 0.91940 0.89853 0.80540 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.02 37.16 0.34 -1.57 16 2 C -0.11 -1.59 2.46 -90.51 -0.22 -1.81 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.12 1.44 5.73 -3.71 -0.02 1.42 16 5 N -0.61 -6.74 2.97 -174.26 -0.52 -7.26 16 6 C 0.59 7.12 7.62 -12.80 -0.10 7.02 16 7 O -0.53 -8.13 16.38 5.21 0.09 -8.05 16 8 C -0.04 -0.37 6.31 -82.41 -0.52 -0.89 16 9 C -0.06 -0.59 10.62 -39.09 -0.42 -1.00 16 10 C -0.13 -1.10 5.97 -106.84 -0.64 -1.74 16 11 C 0.29 2.98 15.83 -22.47 -0.36 2.63 16 12 N -0.44 -5.53 18.54 41.84 0.78 -4.76 16 13 C 0.09 0.48 11.90 -16.44 -0.20 0.29 16 14 N -0.52 -3.14 4.66 -9.27 -0.04 -3.18 16 15 H 0.43 1.67 6.37 -40.82 -0.26 1.41 16 16 C 0.09 0.84 5.29 -3.70 -0.02 0.82 16 17 C -0.15 -2.07 5.66 -26.61 -0.15 -2.22 16 18 C 0.19 3.05 2.19 -67.89 -0.15 2.90 16 19 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.74 -15.68 4.21 -53.39 -0.22 -15.91 16 21 C -0.25 -6.31 10.41 -15.06 -0.16 -6.47 16 22 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -27.91 13.97 55.49 0.78 -27.13 16 25 Si 0.88 21.11 27.74 -169.99 -4.71 16.40 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.12 7.37 -51.93 -0.38 0.73 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.75 8.14 -51.94 -0.42 0.33 16 33 H 0.09 1.16 7.00 -51.93 -0.36 0.79 16 34 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.19 0.32 8.06 -52.48 -0.42 -0.10 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.59 4.22 -51.93 -0.22 0.37 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.36 7.74 5.37 -40.82 -0.22 7.52 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -33.20 341.59 -6.68 -39.88 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.26 Total: 5.38 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.70 Total: -0.53 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.76 Total: -58.23 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.20 -6.68 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035971663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.341 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds